Tumor Biology

, Volume 35, Issue 5, pp 4599–4617 | Cite as

Genomic characterization of three urinary bladder cancer cell lines: understanding genomic types of urinary bladder cancer

  • Rosário Pinto-Leite
  • Isabel Carreira
  • Joana Melo
  • Susana Isabel Ferreira
  • Ilda Ribeiro
  • Jaqueline Ferreira
  • Marco Filipe
  • Carina Bernardo
  • Regina Arantes-Rodrigues
  • Paula Oliveira
  • Lúcio Santos
Research Article

Abstract

Several genomic regions are frequently altered and associated with the type, stage and progression of urinary bladder cancer (UBC). We present the characterization of 5637, T24 and HT1376 UBC cell lines by karyotyping, fluorescence in situ hybridization (FISH), array comparative genomic hybridization (aCGH) and multiplex ligation-dependent probe amplification (MLPA) analysis. Some cytogenetic anomalies present in UBC were found in the three cell lines, such as chromosome 20 aneuploidy and the loss of 9p21. Some gene loci losses (e.g. CDKN2A) and gains (e.g. HRAS, BCL2L1 and PTPN1) were coincident across all cell lines. Although some significant heterogeneity and complexity were detected between them, their genomic profiles exhibited a similar pattern to UBC. We suggest that 5637 and HT1376 represent the E2F3/RB1 pathway due to amplification of 6p22.3, concomitant with loss of one copy of RB1 and mutation of the remaining copy. The HT1376 presented a 10q deletion involving PTEN region and no alteration of PIK3CA region which, in combination with the inactivation of TP53, bears more invasive and metastatic properties than 5637. The T24 belongs to the alternative pathway of FGFR3/CCND1 by presenting mutated HRAS and over-represented CCND1. These cell lines cover the more frequent subtypes of UBC and are reliable models that can be used, as a group, in preclinical studies.

Keywords

Urinary bladder cancer Urinary bladder cancer cell lines Genomic Chromosome aCGH MLPA 

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Copyright information

© International Society of Oncology and BioMarkers (ISOBM) 2014

Authors and Affiliations

  • Rosário Pinto-Leite
    • 1
  • Isabel Carreira
    • 2
    • 3
  • Joana Melo
    • 2
    • 3
  • Susana Isabel Ferreira
    • 2
  • Ilda Ribeiro
    • 2
    • 3
  • Jaqueline Ferreira
    • 1
  • Marco Filipe
    • 1
  • Carina Bernardo
    • 4
  • Regina Arantes-Rodrigues
    • 5
  • Paula Oliveira
    • 5
  • Lúcio Santos
    • 4
    • 6
    • 7
  1. 1.Cytogenetic Laboratory, Department of Human GeneticsHospital Center of Trás-os-Montes and Alto DouroVila RealPortugal
  2. 2.Cytogenetics and Genomics Laboratory, Faculty of MedicineUniversity of CoimbraCoimbraPortugal
  3. 3.Center of Investigation on Environment Genetics and Oncobiology (CIMAGO), Faculty of MedicineUniversity of CoimbraCoimbraPortugal
  4. 4.Experimental Pathology and Therapeutics Group, Research CenterPortuguese Oncology InstitutePortoPortugal
  5. 5.Centre for the Research and Technology of Agro-Environmental and Biological Sciences (CITAB)University of Trás-os-Montes and Alto DouroVila RealPortugal
  6. 6.Department of Surgical OncologyPortuguese Institute of OncologyPortoPortugal
  7. 7.Health FacultyFernando Pessoa UniversityPortoPortugal

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