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Genes & Genomics

, Volume 39, Issue 9, pp 987–995 | Cite as

Two mitogenomes in Gruiformes (Amaurornis akool/A. phoenicurus) and the phylogenetic placement of Rallidae

  • Jie Gong
  • Ruoping Zhao
  • Qingrong Huang
  • Xiaomin Sun
  • Ling HuangEmail author
  • Meidong JingEmail author
Research Article

Abstract

Rallidae, with 34 genera including 142 species, is the largest family in the Gruiformes, the phylogenetic placement of this family was still in debate. The complete mitochondrial genomes (mitogenomes), with many advantageous characters, have become popular markers in phylogenetic analyses. We sequenced the mitogenomes of brown crake (Amaurornis akool) and white-breasted waterhen (Amaurornis phoenicurus), analyzed the genomic characters of mitogenomes in Rallidae, and explored the phylogenetic relationships between Rallidae and other four families in Gruiformes based on mitogenome sequences of 32 species with Bayesian method. The mitogenome of A. akool/A. phoenicurus was 16,950/17,213 bp in length, and contained 37 genes typical to avian mitogenomes and one control region, respectively. The genomic characters of mitogenomes in Rallidae were similar. The phylogenetic results indicated that, among five families, Rallidae had closest relationship with Heliornithidae, which formed a sister taxa to Gruidae, while Rhynochetidae located in the basal lineage. Within Rallidae, Rallina was ancestral clade. Gallirallus & Rallus and Aramides were closely related, Gallicrex & Amaurornis and Fulica & Gallinula had close relationships, and these two taxa formed a sister clade to Porphyrio & Coturnicops. Our phylogenetic analyses provided solid evidence for the phylogenetic placement of Rallidae and the evolutionary relationships among different genus within this family. In addition, the mitogenome data presented here provide useful information for further molecular systematic investigations on Gruiformes as well as conservation biology research of these species.

Keywords

Amaurornis akool A. phoenicurus Rallidae Mitochondrial genome Phylogenetic placement 

Notes

Acknowledgements

This work was supported by the Natural Scientific Foundation of China (No. 31371252) and the open project from the State Key Laboratory of Genetic Resource and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences (GREKF15-04).

Compliance with ethical standards

Conflict of interest

Jie Gong, Ruoping Zhao, Qingrong Huang, Xiaomin Sun, Ling Huang and Meidong Jing declares that they have no conflict of interest.

Research involving animal and human rights

This article does not contain any studies with human subjects by any of the authors. The animal experiment throughout the study was conducted according to the Chinese Ministry of Science and Technology Guiding Directives for Humane Treatment of Laboratory Animals.

Supplementary material

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Copyright information

© The Genetics Society of Korea and Springer-Science and Media 2017

Authors and Affiliations

  1. 1.School of Life SciencesLudong UniversityYantaiPeople’s Republic of China
  2. 2.State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of ZoologyChinese Academy of SciencesKunmingPeople’s Republic of China

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