Fungal Diversity

, Volume 94, Issue 1, pp 41–129 | Cite as

One stop shop II: taxonomic update with molecular phylogeny for important phytopathogenic genera: 26–50 (2019)

  • Ruvishika S. Jayawardena
  • Kevin D. Hyde
  • Rajesh Jeewon
  • Masoomeh Ghobad-Nejhad
  • Dhanushka N. Wanasinghe
  • NingGuo Liu
  • Alan J. L. Phillips
  • José Ribamar C. Oliveira-Filho
  • Gladstone A. da Silva
  • Tatiana B. Gibertoni
  • P. Abeywikrama
  • L. M. Carris
  • K. W. T. Chethana
  • A. J. Dissanayake
  • S. Hongsanan
  • S. C. Jayasiri
  • A. R. McTaggart
  • R. H. Perera
  • K. Phutthacharoen
  • K. G. Savchenko
  • R. G. Shivas
  • Naritsada Thongklang
  • Wei Dong
  • DePing Wei
  • Nalin N. Wijayawardena
  • Ji-Chuan KangEmail author


This paper is the second in a series focused on providing a stable platform for the taxonomy of phytopathogenic fungi. It focuses on 25 phytopathogenic genera: Alternaria, Bipolaris, Boeremia, Botryosphaeria, Calonectria, Coniella, Corticiaceae, Curvularia, Elsinoe, Entyloma, Erythricium, Fomitiporia, Fulviformes, Laetisaria, Limonomyces, Neofabraea, Neofusicoccum, Phaeoacremonium, Phellinotus, Phyllosticta, Plenodomus, Pseudopyricularia, Tilletia, Venturia and Waitea, using recent molecular data, up to date names and the latest taxonomic insights. For each genus a taxonomic background, diversity aspects, species identification and classification based on molecular phylogeny and recommended genetic markers are provided. In this study, varieties of the genus Boeremia have been elevated to species level. Botryosphaeria, Bipolaris, Curvularia, Neofusicoccum and Phyllosticta that were included in the One Stop Shop 1 paper are provided with updated entries, as many new species have been introduced to these genera.


Boeremia DNA barcodes Endophytes Plant pathology Systematics Taxonomy 



This work was funded by the grants of the National Natural Science Foundation of China (NSFC Grant Nos. 31670027, 31460011 and 30870009). Ruvishika S. Jayawardena would like to thank the National Research Council of Thailand grants Thailands’ Fungal Diversity, Solving Problems and Creating Biotechnological Products (Grant No. 61201321016) and Taxonomy, Diversity, Phylogeny and Evolution of fungi in Capnodiales (Grant No. 61215320024). Kevin D. Hyde would like to thank “the future of specialist fungi in a changing climate: baseline data for generalist and specialist fungi associated with ants, Rhododendron species and Dracena species” (Grant No. DBG6080013) and “Impact of climate change on fungal diversity and biogeography in the Greater Mekong Subregion” (RDG6130001). Rajesh Jeewon would like to thank Mae Fah Luang University and University of Mauritius for research support. Alan J.L. Phillips acknowledges the support from Biosystems and Integrative Sciences Institute (BioISI, FCT/UID/Multi/04046/2013). José RC Oliveira-Filho, Gladstone A. da Silva and Tatiana B. Gibertoni would like to thank Associação Nordesta for field support, Capes-SIU (008/13) and Fundação de Amparo à Ciência e Technologia de Pernambuco (FACEPE, APQ-0375-2.03/15) for financial support and the Conselho Nacional de Desenvolvimento Científico e Technológico (CNPq) (307601/2015-3 and 312186/2016-9) for scholarships. Alistair R. McTaggart acknowledges the University of Queensland Development Fellowships (UQFEL1718905) and support from the Department of the Environment and Energy under the Australian Biological Resources Study (Grant No. RG18-43). Kuntida Phutthacharoen would like to thank the Royal Golden Jubilee PhD program under Thailand Research Fund for a personal grant (RGJ scholarship no. PHD/0002/2560). Wei Dong would like to acknowledge the National Natural Science Foundation of China (Project ID: NSF31500017 to Huang Zhang). Ruvishika S. Jayawardena would like to thank Dr. S. Pennycook, Dr. P. Kirk and Dr. O. Raspe for their valuable suggestions to improve this manuscript. D.N. Wanasinghe would like to thank CAS President’s International Fellowship Initiative (PIFI) for funding his postdoctoral research (number 2019PC0008), the National Science Foundation of China and the Chinese Academy of Sciences for financial support under the following grants: 41761144055, 41771063 and Y4ZK111B01.


  1. Abeln ECA, de Pagter MA, Verkley GJM (2000) Phylogeny of Pezicula, Dermea and Neofabraea inferred from partial sequences of the nuclear ribosomal RNA gene cluster. Mycologia 92:685–693Google Scholar
  2. Agrios GN (1997) Control of plant diseases. Plant Pathol 5:295–357Google Scholar
  3. Ahmadpour A, Heidarian Z, Donyadoost-Chelan M, Javan-Nikkhah M, Tsukiboshi T (2012) A new species of Bipolaris from Iran. Mycotaxon 120:301–307Google Scholar
  4. Ajello L, Georg LK, Steigbigel RT, Wang CJ (1974) A case of phaeohyphomycosis caused by a new species of Phialophora. Mycologia 66:490–498Google Scholar
  5. Alvarez LV, Groenewald JZ, Crous PW (2016) Revising the Schizoparmaceae: Coniella and its synonyms Pilidiella and Schizoparme. Stud Mycol 85:1–34Google Scholar
  6. Alves A, Correia A, Luque J, Phillips A (2004) Botryosphaeria corticola sp. nov. on Quercus species with notes and description of Botryosphaeria stevensii and its anamorph, Diplodia mutila. Mycologia 96:598–613Google Scholar
  7. Amalfi M, Decock C (2014) Fomitiporia expansa, an undescribed species from French Guiana. Cryptogam Mycol 35:73–85Google Scholar
  8. Amalfi M, Yombiyeni P, Decock C (2010) Fomitiporia in sub-Saharan Africa: morphology and multigene phylogenetic analysis support three new species from the Guineo-Congolian rainforest. Mycologia 102:1303–1317Google Scholar
  9. Amalfi M, Raymundo T, Valenzuela R, Decock C (2012) Fomitiporia cupressicola sp. nov., a parasite on Cupressus arizonica, and additional unnamed clades in the southern USA and northern Mexico, determined by multilocus phylogenetic analyses. Mycologia 104:880–893Google Scholar
  10. Amaradasa BS, Horvath BJ, Lakshman DK, Warnke SE (2013) DNA fingerprinting and anastomosis grouping reveal similar genetic diversity in Rhizoctonia species infecting turfgrasses in the transition zone of USA. Mycologia 105:1190–1201Google Scholar
  11. Arabi MIE, Jawhar M (2013) A simple method for assessing severity of common root rot on Barley. Plant Pathol J 29:451–453Google Scholar
  12. Ariyawansa HA, Hawksworth DL, Hyde KD, Jones EG, Maharachchikumbura SS, Manamgoda DS, Thambugala KM, Udayanga D, Camporesi E, Daranagama A, Jayawardena R, Li JK, McKenzie EHC, Phookamsak R, Senanayake IC, Shivas RG, Tian Q, Xu JC (2014) Epitypification and neotypification: guidelines with appropriate and inappropriate examples. Fungal Divers 69:57–91Google Scholar
  13. Ariyawansa HA, Hyde KD, Jayasiri SC, Buyck B, Chethana KT, Dai DQ, Dai YC, Daranagama DA, Jayawardena RS, Lücking R, Ghobad-Nejhad M, Niskanen T, Thambugala KM, Voigt K, Zhao R, Li G, Doilom M, Boonmee S, Yang ZL, Cai Q, Cui Y-Y, Bahkali AH, Chen J, Cui BK, Chen JJ, Dayarathne MC, Dissanayake AJ, Ekanayaka AH, Hashimoto A, Hongsanan S, Jones EBG, Larsson E, Li WJ, Li Q-R, Liu JK, Luo ZL, Maharachchikumbura SSN, Mapook A, McKenzie EHC, Norphanphoun C, Konta S, Pang KL, Perera RH, Phookamsak R, Phukhamsakda C, Pinruan U, Randrianjohany E, Singtripop C, Tanaka K, Tian C, Tibpromma S, Abdel-Wahab MA, Wanasinghe DN, Wijayawardene NN, Zhang J-F, Zhang H, Abdel-Aziz FA, Wedin M, Westberg M, Ammirati JF, Bulgakov TS, Lima DX, Callaghan TM, Callac P, Chang C-H, Coca LF, Dal-Forno M, Dollhofer V, Fliegerova K, Greiner K, Griffith GW, Ho H-M, Hofstetter V, Jeewon R, Kang JC, Wen T-C, Kirk PM, Kytovuori I, Lawrey JD, Xing J, Li H, Liu ZY, Liu XZ, Liimatainen K, Lumbsch HT, Matsumura M, Moncada B, Nuankaew S, Parnmen S, de Azevedo Santiago ALCM, Sommai S, Song Y, de Souza CAF, de Souza-Motta CM, Su HY, Suetrong S, Wang Y, Wei S-F, Wen TC, Yuan HS, Zhou LW, Reblova M, Fournier J, Camporesi E, Luangsa-ard JJ, Tasanathai K, Khonsanit A, Thanakitpipattana D, Somrithipol S, Diederich P, Millanes AM, Common RS, Stadler M, Yan JY, Li X, Lee HW, Nguyen TTT, Lee HB, Battistin E, Marsico O, Vizzini A, Vila J, Ercole E, Eberhardt U, Simonini G, Wen H-A, Chen X-H, Miettinen O, Spirin V, Hernawati (2015a) Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 75:27–274Google Scholar
  14. Ariyawansa HA, Thambugala KM, Manamgoda DS, Jayawardena R, Camporesi E, Boonmee S, Wanasinghe DN, Phookamsak R, Hongsanan S, Singtripop C (2015b) Towards a natural classification and backbone tree for Pleosporaceae. Fungal Divers 71:85–139Google Scholar
  15. Aveskamp MM, Woudenberg JHC, de Gruyter J, Turco E, Groenewald JZ, Crous PW (2009) Development of taxon-specific sequence characterized amplified regions (SCAR) markers based on actin sequences and DNA amplification fingerprinting (DAF): a case study in the Phoma exigua species complex. Mol Plant Pathol 10:403–414Google Scholar
  16. Aveskamp MM, de Gruyter J, Woudenberg JHC, Verkley GM, Crous PW (2010) Highlights of the Didymellaceae: a polyphasic approach to characterize Phoma and related pleosporalean genera. Stud Mycol 65:1–60Google Scholar
  17. Baayen R, Bonants P, Verkley G, Carroll GC, Van Der Aa HA, de Weerdt M, van Brouwershaven IR, Schutte GC, Maccheroni W Jr, de Blanco CG, Azevedo JL (2002) Nonpathogenic isolates of the citrus black spot fungus, Guignardia citricarpa, identified as a cosmopolitan endophyte of woody plants, G. mangiferae (Phyllosticta capitalensis). Phytopathology 92:464–477Google Scholar
  18. Baddley JW, Mostert L, Summerbell RC, Moser SA (2006) Phaeoacremonium parasiticum infections confirmed by beta-tubulin sequence analysis of case isolates. J Clin Microbiol 44:2207–2211Google Scholar
  19. Barnes LW, Linderman RG (2001) Diseases caused by Cylindrocladium. In: Jones RK, Benson DM (eds) Diseases of woody ornamentals and trees in nurseries. APS Press, Minnesota, pp 43–45Google Scholar
  20. Barr ME (1968) The Venturiaceae in North America. Can J Bot 46:799–864Google Scholar
  21. Barr ME (1972) Preliminary studies on the Dothideales in temperate North America. Contrib Univ Mich Herb 9:523–638Google Scholar
  22. Barr ME (1979) A classification of Loculoascomycetes. Mycologia 71:935–957Google Scholar
  23. Bauer R, Begerow D, Oberwinkler F (2001) The Georgefischeriales: a phylogenetic hypothesis. Mycol Res 105:416–424Google Scholar
  24. Bauer R, Lutz M, Oberwinkler F (2005) Gjaerumia, a new genus in the Georgefischeriales (Ustilaginomycetes). Mycol Res 109:1250–1258Google Scholar
  25. Begerow D, Bauer R, Oberwinkler F (1997) Phylogenetic studies on the nuclear large subunit ribosomal DNA of smut fungi and related taxa. Can J Bot 75:2045–2056Google Scholar
  26. Begerow D, Lutz M, Oberwinkler F (2002) Implications of molecular characters for the phylogeny of the genus Entyloma. Mycol Res 106:1392–1399Google Scholar
  27. Berner D, Cavin C, Woudenberg JHC, Tunali B, Büyük O, Kansu B (2015) Assessment of Boeremia exigua var. rhapontica, as a biological control agent of Russian knapweed (Rhaponticum repens). Biol Control 81:65–75Google Scholar
  28. Binder M, Hibbett DS, Larsson KH, Larsson E, Langer E, Langer G (2005) The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (homobasidiomycetes). Syst Biodivers 3:113–157Google Scholar
  29. Bitancourt AA, Jenkins AE (1936) Perfect stage of the sweet orange fruit scab fungus. Mycologia 28:489–492Google Scholar
  30. Bitancourt AA, Jenkins AE (1949) Estudos sôbre as Miriangiales. I. Dez novas espécies de Elsinoaceas descobertas no Brasil. Arquivos do Instituto Biológico de São Paulo 19:93–109Google Scholar
  31. Boehm EWA, Mugambi GK, Miller AN (2009) A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae Dothideomycetes) with keys to world species. Stud Mycol 64:49–83Google Scholar
  32. Boerema GH, Van Kesteren HA (1964) The nomenclature of two fungi parasitizing Brassica. Persoonia 3:17–28Google Scholar
  33. Boerema GH, de Gruyter J, Van Kesteren HA (1994) Contributions towards a monograph of Phoma (Coelomycetes)—III. 1. Section Plenodomus: taxa often with a Leptosphaeria teleomorph. Persoonia 15:431–487Google Scholar
  34. Boerema GH, de Gruyter J, Noordeloos ME, Hamers MEC (2004) Phoma identification manual. CABI Publishing, CambridgeGoogle Scholar
  35. Burdsall Jr HH (1979) Laetisaria (Aphyllophorales, Corticiaceae), a new genus for the teleomorph of Isaria fuciformis. Trans Br Mycol Soc 72:419–422Google Scholar
  36. Burpee LL, Mims CW, Tredway LP, Bae J, Jung G (2003) Pathogenicity of a novel biotype of Limonomyces roseipellis in tall fescue. Plant Dis 87:1031–1036Google Scholar
  37. Bussaban B, Lumyong S, Lumyong P, Seelanan T, Park DC, McKenzie EHC, Hyde KD (2005) Molecular and morhphological characterization of Pyricularia and allied genera. Mycologia 97:1002–1011Google Scholar
  38. Campos-Santana M, Amalfi M, Robledo G, da Silveira RMB, Decock C (2014) Fomitiporia neotropica, a new species from South America evidenced by multilocus phylogenetic analyses. Mycol Progress 13:601–615Google Scholar
  39. Campos-Santana M, Amalfi M, Castillo G, Decock C (2016) Multilocus, DNA-based phylogenetic analyses reveal three new species lineages in the Phellinus gabonensis-P. caribaeo-quercicola species complex, including P. amazonicus sp. nov. Mycologia 108:939–953Google Scholar
  40. Cannon PF, Damm U, Johnston PR, Weir BS (2012) Colletotrichum-current status and future directions. Stud Mycol 73:181–213Google Scholar
  41. Carefoot GL, Sprott ER (1967) Famine on the wind: plant diseases and human history. Rand McNally and Company, ChicagoGoogle Scholar
  42. Carisse O, Tremblay DM, Jobin T, Walker AS (2010) Disease decision support systems: Their impact on disease management and durability of fungicide effectiveness. In: Carisse O (ed) Fungicides. In TechGoogle Scholar
  43. Castlebury LA, Carris LM (1999) Tilletia walkeri, a new species on Lolium multiflorum and L. perenne. Mycologia 91:121–131Google Scholar
  44. Castlebury LA, Rossman AY, Jaklitsch WJ, Vasilyeva LN (2002) A preliminary overview of the Diaporthales based on large subunit nuclear ribosomal DNA sequences. Mycologia 94:1017–1031Google Scholar
  45. Castlebury LA, Carris LM, Vánky K (2005) Phylogenetic analysis of Tilletia and allied genera in order Tilletiales (Ustilaginomycetes, Exobasidiomycetidae) based on large subunit nuclear rDNA sequences. Mycologia 97:888–900Google Scholar
  46. Cesati V, de Notaris G (1863) Schema di classificazione degli sferiacei italici aschigeri piu’ o meno appartenenti al genere Sphaeria nell’ antico significato attribuitoglide Persson. Commentario della Societá Crittogamologica Italiana 14:177–240Google Scholar
  47. Chandra A, Huff DR (2008) Salmacisia, a new genus of Tilletiales: reclassification of Tilletia buchloëana causing induced hermaphroditism in buffalograss. Mycologia 100:81–93Google Scholar
  48. Chang T, Lee YS (2016) Occurrence of brown blight caused by Waitea circinata var. zeae on cool season turfgrass in Korea. Mycrobiology 44:330–334Google Scholar
  49. Cheewangkoon R, Groenewald JZ, Summerell BA, Hyde KD, To-Anun C, Crous PW (2009) Myrtacaeae, a cache of fungal biodiversity. Persoonia 23:55–85Google Scholar
  50. Chen H, Cui BK (2017) Multi-locus phylogeny and morphology reveal five new species of Fomitiporia (Hymenochaetaceae) from China. Mycol Prog 16:687–701Google Scholar
  51. Chen S, Lombard L, Roux J, Xie Y, Wingfield MJ, Zhou XD (2011) Novel species of Calonectria associated with Eucalyptus leaf blight in Southeast China. Persoonia 26:1–12sGoogle Scholar
  52. Chen Y, Shao D-D, Zhang A-F, Yang X, Zhou MG, Xu YL (2014) First report of a fruit rot and twig blight on pomegranate (Punica granatum) caused by Pilidiella granati in Anhui province of China. Plant Dis 98:695Google Scholar
  53. Chen Q, Jiang GR, Zhang GZ, Cai L, Crous PW (2015) Resolving the Phoma enigma. Stud Mycol 82:137–217Google Scholar
  54. Chen H, Zhou J, Cui BK (2016a) Two new species of Fomitiporia (Hymenochaetales, Basidiomycota) from Tibet, southwest China. Mycologia 108:1010–1017Google Scholar
  55. Chen C, Verkley GJ, Sun G, Groenewald JZ, Crous PW (2016b) Redefining common endophytes and plant pathogens in Neofabraea, Pezicula and related genera. Fungal Biol 120:1291–1322Google Scholar
  56. Chen Q, Hou LW, Duan WJ, Crous PW, Cai L (2017) Didymellaceae revisited. Stud Mycol 87:105–159Google Scholar
  57. Chethana KWT, Zhou Y, Zhang W, Liu M, Xing QK, Hyde KD, Yan JY, Li XH (2017) Coniella vitis sp. nov. is the common pathogen of white rot in Chinese vineyards. Plant Dis 101:2123–2136Google Scholar
  58. Chou HH, Wu WS (2002) Phylogenetic analysis of internal transcribed spacer regions of the genus Alternaria, and the significance of filament-beaked conidia. Mycol Res 106:164–169Google Scholar
  59. Chung KR, Liao HL (2008) Determination of a transcriptional regulator-like gene involved in biosynthesis of elsinochrome phytotoxin by the citrus scab fungus, Elsinoe fawcettii. Microbiology 154:3556Google Scholar
  60. Cloete M, Fourie PH, Damm U, Crous PW, Mostert L (2011) Fungi associated with die-back symptoms of apple and pear trees, a possible inoculum source of grapevine trunk disease pathogens. Phytopathol Mediterr 50:176–190Google Scholar
  61. Cloete M, Fischer M, Mostert L, Halleen F (2014) A novel Fomitiporia species associated with esca on grapevine in South Africa. Mycol Progres 13:303–311Google Scholar
  62. Cloete M, Fischer M, Mostert L, Halleen F (2015) Hymenochaetales associated with esca-related wood rots on grapevine with a special emphasis on the status of esca in South African vineyards. Phytopathol Mediterr 54:299–312Google Scholar
  63. Coelho G, da Silveira RMB, Guerrero RT, Rajchenberg M (2009) On poroid Hymenochaetales growing on bamboos in Southern Brazil and NE Argentina. Fungal Divers 36:1–8Google Scholar
  64. Cordell CE, Skilling DD (1975) Forest nursery diseases in the USA. 7. Cylindrocladium root rot. USDA Forest service handbook No. 470:23–26Google Scholar
  65. Cortesi P, Fischer M, Milgroom MG (2000) Identification and spread of Fomitiporia punctate associated with wood decay of grapevine showing symptoms of Esca. Phytopathology 90:967–972Google Scholar
  66. Crous PW (2002) Taxonomy and pathology of Cylindrocladium (Calonectria) and allied genera. American Phytopathological Society Press, St Paul, MNGoogle Scholar
  67. Crous PW, Wingfield MJ (1994) A monograph of Cylindrocladium, including anamorphs of Calonectria. Mycotaxon 51:341–435Google Scholar
  68. Crous PW, Phillips AJL, Wingfield MJ (1991) The genera Cylindrocladium and Cylindrocladiella in South Africa, with special reference to forest nurseries. South Afri For J 157:69–85Google Scholar
  69. Crous PW, Gams W, Wingfield MJ, Wyk PSV (1996) Phaeoacremonium gen. nov. associated with wilt and decline disease of woody hosts and human infections. Mycologia 88:786–796Google Scholar
  70. Crous PW, Wingfield MJ, Mohammed C, Yuan ZQ (1998) New foliar pathogens of Eucalyptus from Australia and Indonesia. Mycol Res 102:527–532Google Scholar
  71. Crous PW, Kang JC, Schoch CL, Mchua GRA (1999) Phylogenetic relationships of Cylindrocladium pseudogracile and Cylindrocladium rumohrae with morphologically similar taxa, based on morphology and DNA sequences of internal transcribed spacers and ß-tubulin. Can J Bot 77:1813–1820Google Scholar
  72. Crous PW, Slippers B, Wingfield MJ, Rheeder J, Marasas WFO, Philips AJL, Alves A, Burgess T, Barber P, Groenewald JZ (2006) Phylogenetic lineages in the Botryosphaeriaceae. Stud Mycol 55:235–253Google Scholar
  73. Crous PW, Schubert K, Braun U, de Hoog GS, Hocking AD, Shin HD, Groenewald JZ (2007) Opportunistic, human pathogenic species in the Herpotrichiellaceae are phylogenetically similar to saprobic or phytopathogenic species in the Venturiaceae. Stud Mycol 58:185–217Google Scholar
  74. Crous PW, Wingfield MJ, Burgess TI, Hardy GE, Crane C, Barrett S, Canolira JF, Le RJ, Thangavel R, Guarro J, Stchigel AM, Martín MP, Alfredo DS, Barber PA, Barreto RW, Baseia IG, Cano-Canals J, Cheewangkoon R, Ferreira RJ, Gené J, Lechat C, Moreno G, Roets F, Shivas RG, Sousa JO, Tan YP, Wiederhold NP, Abell SE, Accioly T, Albizu JL, Alves JL, Antoniolli ZI, Aplin N, Araújo J, Arzanlou M, Bezerra JDP, Bouchara JP, Carlavilla JR, Castillo A, Castroagudín VL, Ceresini PC, Claridge GF, Coelho G, Coimbra VRM, Costa LA, da Cunha KC, da Silva SS, Daniel R, de Beer ZW, Dueñas M, Edwards J, Enwistle P, Fiuza PO, Fournier J, García D, Gibertoni TB, Giraud S, Guevara-Suarez M, Gusmão LFP, Haituk S, Heykoop M, Hirooka Y, Hofmann TA, Houbraken J, Hughes DP, Kautamanová I, Koppel O, Koukol O, Larsson E, Latha KPD, Lee DH, Lisboa DO, Lisboa WS, López-Villalba Á, Maciel JLN, Manimohan P, Manjón JL, Marincowitz S, Marney TS, Meijer M, Miller AN, Olariaga I, Paiva LM, Piepenbring M, Poveda-Molero JC, Raj KNA, Raja HA, Rougeron A, Salcedo I, Samadi R, Santos TAB, Scarlett K, Seifert KA, Shuttleworth LA, Silva GA, Silva M, Siqueira JPZ, Souza-Motta CM, Stephenson SL, Sutton DA, Tamakeaw N, Telleria MT, Valenzuela-Lopez N, Viljoen A, Visagie CM, Vizzini A, Wartchow F, Wingfield BD, Yurchenko E, Zamora JC, Groenewald JZ (2016) Fungal Planet description sheets: 469–557. Persoonia 37:218–403Google Scholar
  75. Crous PW, Wingfield MJ, Burgess TI, Hardy GE, Gené J, Guarro J, Baseia IG, García D, Gusmão LFP, Souza-Motta CM, Thangavel R, Adamčík S, Barili A, Barnes CW, Bezerra JDP, Bordallo JJ, Cano-Lira JF, de Oliveira RJV,Ercole E, Hubka V, Iturrieta-González I, Kubátová A, Martín MP, Moreau P-A, Morte A, Ordoñez ME, Rodríguez A, Stchigel AM, Vizzini A, Adbollahzadeh J, Abreu VP, Adamčíková K, Albuquerque GMR, Alexandrova AV, Alvarez DE, Armstrong-Cho C, Banniza S, Barbosa RN, Bellanger JM, Bezerra JL, Cabral TS, Carboň M, Caicedo E, Cantillo T, Carnegie AJ, Carmo LT, Castañeda-Ruiz RF, Clement CR, Čmoková A., Conceição LB, Cruz RHSF, Damm U, da Silva BDB, da Silva GA, da Silva RMF, de Santiago ALCM, de Oliveira LF, de Souza CAF, Déniel F, Dima B, Dong G, Edwards J, Félix CR, Fournier J, Gibertoni TB, Hosaka K, Iturriaga T, Jadan M, Jany J-L, Jurjević Ž, Kolařík M, Kušan I, Landekk MF, Leite Cordeiro TR, Lima DX, Loizides M, Luo S, Machado AR, Madrid H, Magalhães OMC, Marinho P, Matočec N, Mešić A, Miller AN, Morozova OV, Neves RP, Nonaka K, Nováková A, Oberlies NH, Oliveira-Filho JRC, Oliveira TGL, Pap V, Pereira OL, Perrone G, Peterson SW, Pham THG, Raja HA, Raudabaugh DB, iŘehulka J, RodrÃgues-Andrade E, Saba M, SchauflerovÃi A, Shivas RG, Simonini G, Siqueira JPZ, Sousa JO, Stajsic V, Svetasheva T, Tan YP, Tkalčec Z, Ullah S, Valente P, Valenzuela-Lopez N, Abrinbana M, Viana Maques DA, Wong PTW, Xavier de Lima V, Groenewald JZ (2018) Fungal planet description sheets: 716–784. Persoonia 40:239–392Google Scholar
  76. Cui BK, Decock C (2013) Phellinus castanopsidis sp. nov. (Hymenochaetaceae) from southern China, with preliminary phylogeny based on rDNA sequences. Mycol Prog 12:341–351Google Scholar
  77. Cunnington J (2004) Three Neofabraea species on pome fruit in Australia. Australas Plant Pathol 33:453–454Google Scholar
  78. Da Cunha KC, Sutton DA, Fothergill AW, Gené J, Cano J, Madrid H, de Hoog S, Crous PW (2013) In vitro antifungal susceptibility and molecular identity of 99 clinical isolates of the opportunistic fungal genus Curvularia. Diagn Microbiol Infect Dis 76:168–174Google Scholar
  79. Dai YC (1999) Phellinus sensu lato (Aphyllophorales, Hymenochaetaceae) in East Asia. Acta Bot Fenn 166:1–115Google Scholar
  80. Dai YC (2010) Hymenochaetaceae (Basidiomycota) in China. Fungal Divers 45:131–343Google Scholar
  81. Dai YC, Cui BK (2011) Fomitiporia ellipsoidea has the largest fruiting body among the fungi. Fungal Biol 115:813–814Google Scholar
  82. Dai YC, Cui BK, Decock C (2008) A new species of Fomitiporia (Hymenochaetaceae, Basidiomycota) from China based on morphological and molecular characters. Mycol Res 112:375–380Google Scholar
  83. Dai YC, Zhou LW, Cui BK, Chen YQ, Decock C (2010) Current advances in Phellinus sensu lato: medicinal species, functions, metabolites and mechanisms. Appl Microbiol Biotechnol 87:1587–1593Google Scholar
  84. Damm U, Mostert L, Crous PW, Fourie PH (2008) Novel Phaeoacremonium species associated with necrotic wood of Prunus trees. Persoonia 20:87–102Google Scholar
  85. de Bary A (1874) Protomyces microsporus und seine Verwandten. Bot Ztg 32:97–108Google Scholar
  86. de Gruyter J, Boerema GH, van der Aa HA (2002) Contributions towards a monograph of Phoma (Ceolomycetes) VI-2. Section Phyllostictoides: outline of its taxa. Persoonia 18:1–53Google Scholar
  87. de Gruyter J, Woudenberg JHC, Aveskamp MM, Verkley GJM, Groenewald JZ, Crous PW (2013) Redisposition of Phoma-like anamorphs in Pleosporales. Stud Mycol 75:1–36Google Scholar
  88. de Jong SN, Lévesque CA, Verkley GJM, Abeln ECA, Rahe JE, Braun PG (2001) Phylogenetic relationships among Neofabraea species causing tree cankers and bull’s-eye rot of apple based on DNA sequencing of ITS nuclear rDNA, mitochondrial rDNA, and the b-tubulin gene. Mycol Res 105:658–669Google Scholar
  89. de la Cerda K, Hsiang T, Joshi V (2010) First report of Waitea circinata from Turfgrass in British Columbia, Canada. Plant Dis 94:277Google Scholar
  90. de Luna LZ, Watson AK, Paulitz TC (2002) Reaction of Rice (Oryza sativa) cultivars to penetration and infection by Curvularia tuberculate and C. oryzae. Plant Dis 86:470–476Google Scholar
  91. Decock C, Bitew A, Castillo G (2005) Fomitiporia tenuis and Fomitiporia aethiopica Basidiomycetes, Hymenochaetales), two undescribed species from the Ethiopian highlands: taxonomy and phylogeny. Mycologia 97:121–129Google Scholar
  92. Decock C, Herrera Figueroa S, Robledo G, Castillo G (2007) Fomitiporia punctata (Basidiomycota, Hymenochaetales) and its presumed taxonomic synonyms in America: taxonomy and phylogeny of some species from tropical/subtropical areas. Mycologia 99:733–752Google Scholar
  93. Denman S, Crous PW, Groenewald JZ, Slippers B, Wingfield BD, Wingfield MJ (2003) Circumscription of Botryosphaeria species associated with Proteaceae based on morphology and DNA sequence data. Mycologia 95:294–307Google Scholar
  94. DePriest PT, Sikaroodi M, Lawrey JD, Diederich P (2005) Marchandiomyces lignicola sp. nov. shows recent and repeated transition between a lignicolous and a lichenicolous habit. Mycol Res 109:57–70Google Scholar
  95. Diederich P, Lawrey JD, Sikaroodi M, Gillevet PM (2011) A new lichenicolous teleomorph is related to plant pathogens in Laetisaria and Limonomyces (Basidiomycota, Corticiales). Mycologia 103:525–533Google Scholar
  96. Diskin S, Feygenberg O, Maurer D, Droby S, Prusky D, Alkan N (2017) Microbiome alternations are correlated with occurrence of postharvest stem-end rot in mango fruit. Phytobiomes 1:117–127Google Scholar
  97. Dissanayake AJ, Phillips AJL, Li XH, Hyde KD (2016) Botryosphaeriaceae: Current status of genera and species. Mycosphere 7:1001–1073Google Scholar
  98. Dissanayake AJ, Camporesi E, Hyde KD, Zhang W, Yan JY, Li XH (2017) Molecular phylogenetic analysis reveals seven new Diaporthe species from Italy. Mycosphere 8:853–877Google Scholar
  99. Dissanayake AJ, Purahong W, Wubet T, Hyde KD, Zhang W, Xu H, Zhang G-J, Fu C-Y, Liu M, Xing Q, Li XH, Yan JY (2018) Direct comparison of culture-dependent and culture-independent molecular approaches reveal the diversity of fungal endophytic communities in stems of grapevine (Vitis vinifera). Fungal Divers 90:85–107Google Scholar
  100. Dodge BO (1946) A curious fungus on Opuntia. Bull Torrey Bot Club 73:219–223Google Scholar
  101. Drechsler-Santos ER, Santos PJP, Gibertoni TB, Cavalcanti MAQ (2010) Ecological aspects of Hymenochaetaceae in an area of Caatinga (semiarid) in Northeast Brazil. Fungal Divers 42:71–78Google Scholar
  102. Drechsler-Santos ER, Robledo G, Lima-Junior NC, Malosso E, Reck MA, Gibertoni TB, Cavalcanti MAQ, Rajchenberg M (2016) Phellinotus, a new neotropical genus in the Hymenochaetaceae (Basidiomycota, Hymenochaetales). Phytotaxa 261:218–239Google Scholar
  103. Dugan FM, Roberts FG, Grove GG (1993) Comparative studies of Cryptosporiopsis curvispora and C. perennans. II. Cytology and vegetative compatibility. Mycologia 85:565–573Google Scholar
  104. El Khizzi N, Bakheshwain S, Parvez S (2010) Bipolaris: a plant pathogen causing human infections: an emerging problem in Saudi Arabia. Res J Microbiol 5:212–217Google Scholar
  105. Elena K, Fischer M, Dimou D, Dimou DM (2006) Fomitiporia mediterranea infecting citrus trees in Greece. Phytopathol Mediterr 45:35–39Google Scholar
  106. El-Goorani MA, Sommer NF (1981) Effects of modified atmospheres on postharvest pathogens of fruits and vegetables. Hort Rev 3:412–461Google Scholar
  107. Ellis MB (1971) Dematiaceous Hyphomycetes Commonwealth Mycological Institute, Kew, Surrey, EnglandGoogle Scholar
  108. Ellis MB (1976) More Dematiaceous Hyphomycetes Commonwealth Mycological Institute, Kew, Surrey, EnglandGoogle Scholar
  109. Eriksson J, Hjortstam K (1970) Erythricium, a new genus of Corticiaceae (basidiomycetes). Sven Bot Tidskr 64:165–169Google Scholar
  110. Essakhi S, Mugnai L, Crous P, Groenewald J, Surico G (2008) Molecular and phenotypic characterisation of novel Phaeoacremonium species isolated from esca diseased grapevines. Persoonia 21:119–134Google Scholar
  111. Everett KR, Reese-George J, Pushparajah IP, Manning MA, Fullerton RA (2011) Molecular identification of Sphaceloma perseae (Avacado scab) and its absence in New Zealand. J Phytopathol 159:106–113Google Scholar
  112. Fan XL, Barreto RW, Groenewald JZ, Bezerra JDP, Pereira OL, Cheewangkoon R, Mostert L, Tian CM, Crous PW (2017) Phylogeny and taxonomy of the scab and spot anthracnose fungus Elsinoe (Myriangiales, Dothideomycetes). Stud Mycol 87:1–41Google Scholar
  113. Farr DF, Rossman AY (2019) Fungal Databases, US National Fungal Collections, ARS USDA.
  114. Ferreira FA, Alfenas AC, Coelho L (1997) Portas-de-entrada para Coniella fragariae em folhas de eucalipto. Revista Árvore 21:307–311Google Scholar
  115. Fiasson JL, Niemela T (1984) The Hymenochaetales: a revision of the European poroid taxa. Karstenia 24:14–28Google Scholar
  116. Fischer M (1996) On the species complexes within Phellinus: Fomitiporia revisited. Mycol Res 100:1459–1467Google Scholar
  117. Fischer M (2002) A new wood-decaying basidiomycete species associated with esca of grapevine: Fomitiporia mediterranea (Hymenochaetales). Mycol Prog 1:315–324Google Scholar
  118. Fischer M, Binder M (2004) Species recognition, geographic distribution and host-pathogen relationships: a case study in a group of lignicolous basidiomycetes, Phellinus s.l. Mycologia 96:799–811Google Scholar
  119. Fischer M, Kassemeyer HH (2003) Fungi associated with esca disease of grapevine in Germany. Vitis 42:109–116Google Scholar
  120. Fischer M, Edwards J, Cunnington JH, Pascoe IG (2005) Basidiomycetous pathogens on grapevine: a new species from Australia-Fomitiporia australiensis. Mycotaxon 92:85–96Google Scholar
  121. Fisher PJ, Petrini O (1992) Fungal saprobes and pathogens as endophytes of rice (Oryza sativa L.). New Phytol 120:137–143Google Scholar
  122. Fox RTV (2014) Fungal pathogens of ornamentals: basidiomycota and oomycota. In: George RAT, Fox RTV (eds) Diseases of temperate horticultural plants. CAB International, Wallingford, UK, pp 391–418Google Scholar
  123. Fries EM (1849) Summa vegetabilium Scandinaviae, pp 1–572Google Scholar
  124. Fukuta S, Nagai H, Suzuki R, Matsumoto Y, Kato S, Saka N, Horikawa H, Kato S, Miyake N (2016) Detection of Fomitiporia torreyae and Fulviformes umbrinellus by multiplex loop-mediated isothermal amplification (mLAMP) for diagnosis of Japanese pear dwarf. Ann Appl Biol 170:170–178Google Scholar
  125. Gams W, Crous PW (2000) Phaeomoniella chlamydospora gen. et comb. nov., a causal organism of Petri grapevine decline and esca. Phytopathol Mediterr 39:112–118Google Scholar
  126. Garibaldi A, Gilardi G, Matic S, Gullino ML (2018) First report of leaf smut caused by Entyloma gailardianum on Gailardia aristata in Italy. Plant Dis 102:678Google Scholar
  127. Gariepy TD, Rahe JE, Levesque CA, Spotts RA, Sugar D, Henriquez JL (2005) Neofabraea species associated with bull’s eye rot and cankers of apple and pear in the Pacific Northwest. Can J Plant Pathol 27:118–124Google Scholar
  128. Gehesquiére B, Crouch JA, Marra RE, Van Poucke K, Rys F, Maes M, Gobin B, Höfte M, Heungens K (2016) Characterization and taxonomic reassessment of the box blight pathogen Calonectria pseudonaviculata, introducing Calonectria henricotiae sp. nov. Plant Pathol 65:37–52Google Scholar
  129. Ghobad-Nejhad M (2012) Corticiales allies of lichenized basidiomycetes—phylogeny and character evolution. In: 7th international lichenological symposium IAL7, Bangkok, Thailand, 9–13 Jan 2012Google Scholar
  130. Ghobad-Nejhad M, Dai YC (2007) The genus Phellinus s.l. (Basidiomycota) in Iran. Mycotaxon 101:201–222Google Scholar
  131. Ghobad-Nejhad M, Hallenberg N (2011) Erythricium atropatanum sp. nov. (Corticiales) from Iran, based on morphological and molecular data. Mycol Prog 10:61–66Google Scholar
  132. Ghobad-Nejhad M, Nilsson RH, Hallenberg N (2010) Phylogeny and taxonomy of the genus Vuilleminia (Basidiomycota) based on molecular and morphological evidence, with new insights into Corticiales. Taxon 59:1519–1534Google Scholar
  133. Gilbertson RL, Ryvarden L (1987) North American Polypores. 2:1–885Google Scholar
  134. Glawe DA, Barlow T, Koike ST (2010) First report of leaf smut of Gaillardia x grandiflora caused by Entyloma gaillardianum in North America. Plant Health Prog.
  135. Glienke C, Pereira O, Stringari D, Fabris J, Kava-Cordeiro V, Galli-Terasawa L, Cunnington J, Shivas RG, Groenewald JZ, Crous PW (2011) Endophytic and pathogenic Phyllosticta species, with reference to those associated with Citrus Black Spot. Persoonia 26:47–56Google Scholar
  136. Gramaje D, Armengol J, Mohammadi H, Banihashemi Z, Mostert L (2009) Novel Phaeoacremonium species associated with Petri disease and esca of grapevine in Iran and Spain. Mycologia 101:920–929Google Scholar
  137. Gramaje D, León M, Pérez-Sierra A, Burgess T, Armengol J (2014) New Phaeoacremonium species isolated from sandalwood trees in Western Australia. IMA Fungus 5:67–77Google Scholar
  138. Gramaje D, Mostert L, Groenewald JZ, Crous PW (2015) Phaeoacremonium: from esca disease to phaeohyphomycosis. Fungal Biol 119:759–783Google Scholar
  139. Guatimosim E, Pinto HJ, Pereira OL (2015) Pathogenic mycobiota of the weeds Bidens pilosa and Bidens subalternans. Trop Plant Pathol 40:298–317Google Scholar
  140. Hahuly MV, Sumardiyono C, Wibowo A, Subandiyah S, Harper S (2018) Identification of purple blotch pathogen of shallot by PCR using specific primer for Alternaria genus. Arch Phytopathol Plant Protect 51:103–121Google Scholar
  141. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In: Nucleic acids symposium series 1999 Jan 1, vol. 41(41), pp. 95–98. Information Retrieval Ltd., London, c1979-c2000Google Scholar
  142. Hattori T, Sakayaroj J, Jones EBG, Suetrong S, Preedanon S, Klaysuban A (2014) Three species of Fulvifomes (Basidiomycota, Hymenochaetales) associated with rots on mangrove tree Xylocarpus granatum in Thailand. Mycoscience 55:344–354Google Scholar
  143. Hawksworth DL (2011) A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names. IMA Fungus 2:155–162Google Scholar
  144. Henriquez JL (2005) Neofabraea species associated with bull’s eye rot and cankers of apple and pear in the Pacific Northwest. Can J Plant Pathol 27:118–124Google Scholar
  145. Henriquez JL, Sugar D, Spotts RA (2004) Etiology of bull’s eye rot of pear caused by Neofabraea spp. in Oregon, Washington and California. Plant Dis 88:1134–1138Google Scholar
  146. Henriquez JL, Sugar D, Spotts RA (2006) Induction of cankers on pear tree branches by Neofabraea alba and N. perennans, and fungicide effects on conidial production on cankers. Plant Dis 90:481–486Google Scholar
  147. Herter WGF (1910) Autobasidiomycetes. Kryptogamen-Flora der Mark Brandenburg 6:1–192Google Scholar
  148. Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Lumbsch HT, Lutzoni F, Matheny PB, Mclaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Staples JA, Vilgalys R, Aime MC, Aproot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai YC, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde KD, Ironside JE, Kõljalg U, Kurtzman CP, Larsson K-H, Lichtwardt R, Longcore J, Miądlikowska J, Miller A, Moncalvo J-M, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schüßler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao Y-J, Zhang N (2007) A higher level phylogenetic classification of the Fungi. Mycol Res 111:509–547Google Scholar
  149. Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182–192Google Scholar
  150. Holmquist O (1990) Heartrot of standing trees in Venezuela: the case of Guayana mora. Revista Forestal Venezolana 24:79–88Google Scholar
  151. Hong SG, Pryor BM (2004) Development of selective media for the isolation and enumeration of Alternaria species from soil and plant debris. Can J Microbiol 50:461–468Google Scholar
  152. Huff DR, Hsiang T, Chandra A, Zhang Y (2017) Draft genome sequence of Salmacisia buchloëana (Basidiomycota), which induces hermaphroditism in dioecious Buffalograss. Genome Announc 5:e00142-17Google Scholar
  153. Hyde KD, McKenzie EH, KoKo TW (2011) Towards incorporating anamorphic fungi in a natural classification–checklist and notes for 2010. Mycosphere 2:1–88Google Scholar
  154. Hyde KD, Jones EBG, Liu JK, Ariyawansha H, Eric B, Boonmee S, Braun U, Chomnunti P, Crous PW, Dai D, Diederich P, Dissanayake A, Doilom M, Doveri F, Hongsanan S, Jayawardena R, Lawrey JD, Li YM, Liu YX, Lücking R, Monkai J, Nelson MP, Phookamsak R, Muggia L, Pang KL, Senanayake I, Shearer CA, Wijayawardene N, Wu HX, Thambugala KM, Suetrong S, Tanaka K, Wikee S, Zhang Y, Aguirre-Hudson B, Alias SA, Aptroot A, Bahkali AH, Bezerra JL, Bhat JD, Binder M, Camporesi E, Chukeatirote E, Hoog SD, Gueidan C, Hawksworth DL, Hirayama K, Kang JC, Knudsen K, Li WJ, Liu ZY, Mapook A, Raja HA, Tian Q, Scheuer C, Schumm F, Taylor J, Yacharoen S, Tibpromma S, Wang Y, Yan JY, Zhang M (2013) Families of Dothideomycetes. Fungal Divers 63:1–313Google Scholar
  155. Hyde KD, Nilsson RH, Alias SA, Ariyawansa HA, Blair JE, Cai L, de Cock AWAM, Dissanayake AJ, Glockling SL, Goonasekara ID, Gorczak M, Hahn M, Jayawardena RS, van Kan JAL, Laurence MH, Lévesque CA, Li X, Liu J-K, Maharachchikumbura SSN, Manamgoda DS, Martin FN, McKenzie EHC, McTaggart AR, Mortimer PE, Nair & Julia Pawłowska PVR, Rintoul TL, Shivas RG, Spies CFJ, Summerell BA, Taylor PWJ, Terhem RB, Udayanga D, Vaghefi N, Walther G, Wilk M, Wrzosek M, Xu J-C, Yan JY, Zhou N (2014) One stop shop: backbones trees for important phytopathogenic genera: I (2014) Fungal Divers 67:21–125Google Scholar
  156. Hyde KD, Norphanphoun C, Abreu VP, Bazzicalupo A, Chethana KT, Clericuzio M, Dayarathne MC, Dissanayake AJ, Ekanayaka AH, He MQ, Hongsanan S, Huang SK, Jayasiri RS, Jayawardena RS, Karunarathna A, Konta S, Kušan I, Lee H, Li J, Lin CG, Liu NG, Lu YZ, Luo ZL, Manawasinghe IS, Mapook A, Perera RH, Phookamsak R, Phukhamsakda C, Siedlecki I, Soares AM, Tennakoon DS, Tian Q, Tibpromma S, Wanasinghe DN, Xiao YP, Yang J, Zeng XY, Abdel-Aziz FA, Li WJ, Senanayake IC, Shang QJ, Daranagama DA, de Silva NI, Thambugala KM, Abdel-Wahab MA, Bahkali AH, Berbee ML, Boonmee S, Bhat DJ, Bulgakov TS, Buyck B, Camporesi E, Castañeda-Ruiz RF, Chomnunti P, Doilom M, Dovana F, Gibertoni TB, Jadan M, Jeewon R, Jones EBG, Kang JC, Karunarathna SC, Lim YW, Liu JK, Liu ZY, Plautz HL Jr, Lumyong S, Maharachchikumbura SSN, Matočec N, McKenzie EHC, Mešić A, Miller D, Pawlowska J, Pereira OL, Promputtha I, Romero AI, Ryvarden L, Su HY, Suetrong S, Tkalčec Z, Vizzini A, Wen TC, Wisitrassameewong K, Wrzosek M, Xu JC, Zhao Q, Zhao RL, Mortimern PE (2017) Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species. Fungal Divers 87:1–235Google Scholar
  157. Hyde KD, Norphanphoun C, Chen J, Dissanayake AJ, Doilom M, Hongsanan S, Jayawardena RS, Jeewon R, Perera RH, Thongbai B, Wanasinghe DN, Wisitrassameewong K, Tibpromma S, Stadler M (2018a) Thailand’s amazing diversity: up to 96% of fungi in northern Thailand may be novel. Fungal Divers 93:215–239Google Scholar
  158. Hyde KD, Al-Hatmi AMS, Andersen B, Boekhout T, Buzina W, Dawson TL Jr, Eastwood DC, Jones EBG, de Hoog S, Kang YQ, Longcore JE, McKenzie EHC, Meis JF, Pinson-Gadais L, Rathnayaka AR, Richard-Forget F, Stadler M, Theelen B, Thongbai B, Tsui CKM (2018b) The world’s ten most feared fungi. Fungal Divers 93:161–194Google Scholar
  159. Illana A, Rodriguez-Romero J, Sesma A (2013) Major plant pathogens of the Magnaporthaceae family. In: Horwitz B, Mukherjee P, Mukherjee M, Kubicek C (eds) Genomics of soil- and plant-associated fungi Soil biology, vol 36. Springer, BerlinGoogle Scholar
  160. Inderbitzin P, Shoemaker RA, O’Neill NR, Turgeon BG, Berbee ML (2006) Systematics and mating systems of two fungal pathogens of opium poppy: the heterothallic Crivellia papaveracea with a Brachycladium penicillatum asexual state and a homothallic species with a Brachycladium papaveris asexual state. Can J Bot 84:1304–1326Google Scholar
  161. Jackson HS (1913) Apple Tree Anthracnose; A Preliminary Report. Oregon Agricultural College Experiment Station Biennial Crop Pest and Horticultural Report, 1911–1912:178–197Google Scholar
  162. James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT (2006) Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature 443:article818Google Scholar
  163. Jayasiri SC, Hyde KD, Jones EB, Jeewon R, Ariyawansa HA, Bhat JD, Camporesi E, Kang JC (2017) Taxonomy and multigene phylogenetic evaluation of novel species in Boeremia and Epicoccum with new records of Ascochyta and Didymella (Didymellaceae). Mycosphere 8:1080–1101Google Scholar
  164. Jayawardena RS, Ariyawansa HA, Singtripop C, Li YM, Yan J, Li X, Nilthong S, Hyde KD (2014) A re-assessment of Elsinoaceae (Myriangiales, Dothideomycetes). Phytotaxa 176:120–138Google Scholar
  165. Jayawardena RS, Zhang W, Liu M, Maharachchikumbura SS, Zhou Y, Huang J, Nilthong S, Wang Z, Li X, Yan J, Hyde KD (2015) Identification and characterization of Pestalotiopsis-like fungi related to grapevine diseases in China. Fungal Biol 119:348–361Google Scholar
  166. Jayawardena RS, Hyde KD, Jeewon R, Li XH, Liu M, Yan JY (2016a) Mycosphere essay 6: why is it important to correctly name Colletotrichum species. Mycosphere 7:1076–1092Google Scholar
  167. Jayawardena RS, Hyde KD, Damm U, Cai L, Liu M, Li XH, Zhang W, Zhao WS, Yan JY (2016b) Notes on currently accepted species of Colletotrichum. Mycosphere 7:1192–1260Google Scholar
  168. Jayawardena RS, Purahong W, Zhang W, Wubet T, Li X, Liu M, Zhao W, Hyde KD, Liu J, Yan J (2018) Biodiversity of fungi on Vitis vinifera L. revealed by traditional and high-resolution culture-independent approaches. Fungal Divers 90:1–84Google Scholar
  169. Jeewon R, Hyde KD (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7:1669–1677Google Scholar
  170. Jenkins AE (1932a) Elsinoe on apple and pear. J Agric Res 44:689–700Google Scholar
  171. Jenkins AE (1932b) Rose anthracnose caused by Sphaceloma. J Agric Res 45:321–337Google Scholar
  172. Ji XH, Wu F, Dai YC, Vlasák J (2017) Two new species of Fulvifomes (Hymenochaetales, Basidiomycota) from America. Mycokeys 22:1–13Google Scholar
  173. Johnston PR, Manning MA, Meier X, Park D, Fullerton RA (2004) Cryptosporiopsis actinidiae sp. nov. Mycotaxon 89:131–136Google Scholar
  174. Johnston PR, Pennycook SR, Manning MA (2005) Taxonomy of fruit rotting fungal pathogens: what’s really out there? N Z Plant Protec 58:42–46Google Scholar
  175. Johnston PR, Seifert KA, Stone JK, Rossman AY, Marvanova L (2014) Recommendations on generic names competing for use in Leotiomycetes (Ascomycota). IMA Fungus 5:91–120Google Scholar
  176. Jones SJ, Hay FS, Harrington TC, Pethybridge SJ (2011) First report of Boeremia blight caused by Boeremia exigua var. exigua on pyrethrum in Australia. Plant Dis 95:1478Google Scholar
  177. Kammerer SJ, Burpee LL, Harmon PF (2011) Identification of a new Waitea circinata variety causing basal leaf blight of seashore paspalum. Plant Dis 95:515–522Google Scholar
  178. Kasanen R, Hantula J, Kurkela T (2002) Neofabraea populi in hybrid aspen stands in southern Finland. Scand J For Res 17:391–397Google Scholar
  179. Katoh K, Toh H (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9:286–298Google Scholar
  180. Kirk PM, Cannon PF, David JC, Stalpers JA (2001) Ainsworth and Bisby’s dictionary of the fungi, 9th edn. CAB International, WallingfordGoogle Scholar
  181. Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Dictionary of the fungi, 10th edn. CABI, Wallingford, UKGoogle Scholar
  182. Kirk PM, Stalpers JA, Braun U, Crous PW, Hansen K, Hawksworth DL, Hyde KD, Lücking R, Lumbsch TH, Rossman AY, Seifert KA (2013) A without-prejudice list of generic names of fungi for protection under the International Code of Nomenclature for algae, fungi, and plants. IMA Fungus 4:381–443Google Scholar
  183. Kishino H, Hasegawa M (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J Mol Evol 29:170–179Google Scholar
  184. Klaubauf S, Tharreau D, Fournier E, Groenewald JZ, Crous PW, de Vries RP, Lebrun MH (2014) Resolving the polyphyletic nature of Pyricularia (Pyriculariaceae). Stud Mycol 79:85–120Google Scholar
  185. Kreis RA, Dillard HR, Smart CD (2016) Population Diversity and Sensitivity to Azoxystrobin of Alternaria brassicicola in New York State. Plant Dis 100:2422–2426Google Scholar
  186. Kruse J, Piątek M, Lutz M, Thines M (2018) Broad host range species in specialised pathogen groups should be treated with suspicion—a case study on Entyloma infecting Ranunculus. Persoonia 41:175–201Google Scholar
  187. Lanoiselet VM, Cother EJ, Ash GJ (2007) Aggregate sheath spot and sheath spot of rice. Crop Prot 26:799–808Google Scholar
  188. Larsen MJ, Cobb-poulle LA (1990) Phellinus (Hymenochaetaceae). A survey of the world taxa. Fungiflora. Oslo, NorwayGoogle Scholar
  189. Larsen MJ, Lombard FF, Hodges CS Jr (1985) Hawaiian forest fungi V. A new species of Phellinus (Hymenochaetaceae) causing decay of Casuarina and Acacia. Mycologia 1:345–352Google Scholar
  190. Larsson KH, Parmasto E, Fischer M, Langer E, Nakasone KK, Redhead SA (2006) Hymenochaetales: a molecular phylogeny for the hymenochaetoid clade. Mycologia 98:926–936Google Scholar
  191. Lawrence DP, Park MS, Pryor BM (2012) Nimbya and Embellisia revisited, with nov. comb for Alternaria celosiae and A. perpunctulata. Mycol Prog 11:799–815Google Scholar
  192. Lawrence DP, Gannibal PB, Peever TL, Pryor BM (2013) The sections of Alternaria: formalizing species-group concepts. Mycologia 105:530–546Google Scholar
  193. Lawrey JD, Diederich P, Sikaroodi M, Gillevet P (2008) Remarkable nutritional diversity of basidiomycetes in the Corticiales, including a new foliicolous species of Marchandiomyces (asexual Basidiomycota, Corticiaceae) from Australia. Am J Bot 95:816–823Google Scholar
  194. Lechat C, Crous PW, Groenewald JZ (2010) The enigma of Calonectria species occurring on leaves of Ilex aquifolium in Europe. IMA Fungus 1:101–108Google Scholar
  195. Li YM, Shivas RG, Cai L (2014) Three new species of Tilletia on Eriachne from north-western Australia. Mycoscience 55:361–366Google Scholar
  196. Li GJ, Hyde KD, Zhao RL, Hongsanan S, Abdel-Aziz FA, Abdel-Wahab AM, Alvarado P, Alves-Silva G, Ammirati JF, Ariyawansa HA, Baghela A, Bahkali AH, Beug M, Bhat DJ, Bojantchev D, Boonpratuang T, Bulgakov TS, Camporesi E, Boro MC, Ceska O, Chakraborty D, Chen JJ, Chethana KWT, Chomnunti P, Consiglio G, Cui BK, Dai DQ, Dai YC, Daranagama DA, Das K, Dayarathne MC, Crop ED, De Oliveira RJV, de Souza CAF, de Souza JI, Dentinger BTM, Dissanayake AJ, Doilom M, Drechsler-Santos ER, Ghobad-Nejhad M, Gilmore SP, Góes-Neto A (2016) Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 78:1–237Google Scholar
  197. Li J, Wingfield MJ, Liu Q, Barnes I, Roux J, Lombard L, Crous PW, Chen S (2017) Calonectria species isolated from Eucalyptus plantations and nurseries in South China. IMA Fungus 8:259–294Google Scholar
  198. Li GQ, Liu FF, Li JQ, Liu QL, Chen SF (2018) Botryosphaeriaceae from Eucalyptus plantations and adjacent plants in China. Persoonia 40:63–95Google Scholar
  199. Lin SH, Huang CH, Deng ZY, Yan MX, Huang WH, Wei JJ, Qin ZQ (2012) First report of leaf spot disease on sugarcane caused by Bipolaris spicifera in China. Australas Plant Dis Notes 7:5–13Google Scholar
  200. Liu JK, Phookamsak R, Doilom M, Wikee S, Li YM, Ariyawansha H, Boonmee S, Chomnunti P, Dai DQ, Bhat JD, Romero A (2012) Towards a natural classification of Botryosphariales. Fungal Divers 57:149–210Google Scholar
  201. Liu JK, Hyde KD, Jones EBG, Ariyawansa HA, Bhat DJ, Boonmee S, Maharachchikumbura SSN, McKenzie EHC, Phookamsak R, Phukhamsakda C, Shenoy BD, Abdel-Wahab MA, Buyck B, Chen J, Chethana KWT, Singtripop C, Dai DQ, Dai YC, Daranagama DA, Dissanayake AJ, Doilom M, Dsouza MJ, Fan XL, Goonasekara ID, Hirayama K, Hongsanan S, Jayasiri SC, Jayawardena RS, Karunarathna SC, Li WJ, Mapook A, Norphanphoun C, Pang KL, Perera RH, Peršoh D, Pinruan U, Senanayake IC, Somrithipol S, Suetrong S, Tanaka K, Thambugala KM, Tian Q, Tibpromma S, Udayanga D, Wijayawardene NN, Wanasinghe D, Wisitrassameewong K, Zeng XY, Abdel-Aziz FA, Adamčík S, Bahkali AH, Boonyuen N, Bulgakov T, Callac P, Chomnunti P, Greiner K, Hashimoto A, Hofstetter V, Kang JC, Lewis D, Li XH, Liu XZ, Liu ZY, Matsumura M, Mortimer PE, Rambold G, Randrianjohany E, Sato G, Sri-Indrasutdhi V, Tian CM, Verbeken A, von Brackel W, Wang Y, Wen TC, Xu JC, Yan JY, Zhao RL, Camporesi E (2015) Fungal diversity notes 1–110: taxonomic and phylogenetic contributions to fungal species. Fungal Divers 72:1–197Google Scholar
  202. Liu F, Wang Y, Zhanga K, Wanga Y, Zhoua R, Zenga Y, Hana Y, Ng TB (2017) A novel polysaccharide with antioxidant, HIV protease inhibiting and HIV integrase inhibiting activities from Fomitiporia punctata (P. karst.) Murrill (Basidiomycota, hymenochaetales). Int J Biol Macromol 97:339–347Google Scholar
  203. Liu TZ, Chen Q, Han ML, Wu F (2018) Fomitiporia rhamnoides sp. nov. (Hymenochaetales, Basidiomycota), a new polypore growing on Hippophae from China. MycoKeys 36:35Google Scholar
  204. Lombard L, Crous PW, Wingfield BD, Wingfield MJ (2010a) Species concepts in Calonectria (Cylindrocladium). Stud Mycol 66:1–14Google Scholar
  205. Lombard L, Crous PW, Wingfield BD, Wingfield MJ (2010b) Phylogeny and systematics of the genus Calonectria. Stud Mycol 66:31–69Google Scholar
  206. Lombard L, Crous PW, Wingfield BD, Wingfield MJ (2010c) Multigene phylogeny and mating tests reveal three cryptic species related to Calonectria pauciramosa. Stud Mycol 66:15–30Google Scholar
  207. Lombard L, Zhou XD, Crous PW, Wingfield BD, Wingfield MJ (2010d) Calonectria species associated with cutting rot of Eucalyptus. Persoonia 24:article1Google Scholar
  208. Lombard L, Wingfield MJ, Alfenas AC, Crous PW (2016) The forgotten Calonectria collection: Pouring old wine into new bags. Stud Mycol 85:159–198Google Scholar
  209. Lopes CA, Silva JB (1993) Management measures to control foot rot of sweet potato caused by Plenodomus destruens. Int J Pest Manag 39:72–74Google Scholar
  210. Lopes UP, Alfenas RF, Zambolim L, Crous PW, Costa H, Pereira OLA (2018) new species of Calonectria causing rot on ripe strawberry fruit in Brazil. Australas Plant Pathol 47:1–11Google Scholar
  211. Lumbsch HT, Huhndorf MS (2007) Outline of Ascomycota-2007. Myconet 13:1–58Google Scholar
  212. Lumbsch HT, Huhndorf SM (2010) Myconet 14 (2). Outline of Ascomycota-2010. Fieldiana Life Earth Sci 1:42–64Google Scholar
  213. Luo J, Zhang N (2013) Magnaporthiopsis, a new genus in Magnaporthaceae (Ascomycota). Mycologia 105:1019–1029Google Scholar
  214. Lutz M, Piątek M (2016) Phylogenetic placement, DNA barcoding, morphology and evidence for the spreading of Entyloma cosmi, a species attacking Cosmos bipinnatus in temperate climate gardens. Eur J Plant Pathol 145:857–869Google Scholar
  215. Maas JL (ed) (1998) Compendium of strawberry diseases, 2nd edn. APS Press, St. PaulGoogle Scholar
  216. Maccaroni M, Corazza L, Buonaurio R, Cappelli C (2002) Occurrence of pink patch of perennial ryegrass caused by Limonomyces roseipellis in Italy. Plant Dis 86:74Google Scholar
  217. Machouart M, Samerpitak K, De Hoog GS, Gueidan C (2014) A multigene phylogeny reveals that Ochroconis belongs to the family Sympoventuriaceae (Venturiales, Dothideomycetes). Fungal Divers 65:77–88Google Scholar
  218. Maharachchikumbura SS, Guo LD, Chukeatirote E, Bahkali AH, Hyde KD (2011) Pestalotiopsis—morphology, phylogeny, biochemistry and diversity. Fungal Divers 50:1–167Google Scholar
  219. Maharachchikumbura SSN, Hyde KD, Jones EBG, McKenzie EHC, Huang SK, Abdel-Wahab MA, Daranagama DA, Dayarathne M, D’souza MJ, Goonasekara ID (2015) Towards a natural classification and backbone tree for Sordariomycetes. Fungal Divers 72:199–301Google Scholar
  220. Maharachchikumbura SS, Hyde KD, Jones EG, McKenzie EH, Bhat JD, Dayarathne MC, Huang SK, Norphanphoun C, Senanayake IC, Perera RH, Shang QJ (2016) Families of Sordariomycetes. Fungal Divers 79:1–317Google Scholar
  221. Manamgoda DS, Cai L, Bahkali AH, Chukeatirote E, Hyde KD (2011) Cochliobolus: an overview and current status of species. Fungal Divers 51:3–42Google Scholar
  222. Manamgoda DS, Udayanga D, Cai L, Chukeatirote E, Hyde KD (2013) Endophytic Colletotrichum from tropical grasses with a new species C. endophytica. Fungal Divers 61:107–115Google Scholar
  223. Manamgoda DS, Rossman AY, Castlebury LA, Crous PW, Madrid H, Chukeatirote E, Hyde KD (2014) The genus Bipolaris. Stud Mycol 79:221–288Google Scholar
  224. Marin-Felix Y, Groenewald JZ, Cai L, Chen Q, Marincowitz S, Barnes I, Bensch K, Braun U, Camporesi E, Damm U, de Beer ZW, Dissanayake A, Edwards J, Giraldo A, Hernández-Restrepo M, Hyde KD, Jayawardena RS, Lombard L, Luangsa-ard J, McTaggart AR, Rossman AY, Sandoval-Denis M, Shen M, Shivas RG, Tan YP, van der Linder EJ, Wingfield MJ, Wood AR, Zhang JQ, Zhang Y, Crous PW (2017) Genera of phytopathogenic fungi: GOPHY 1. Stud Mycol 86:99–216Google Scholar
  225. Matheny PB, Wang Z, Binder M, Curtis JM, Lim YW, Nilsson RH, Hughes KW, Hofstetter V, Ammirati JF, Schoch CL, Langer E (2007) Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Mol Phylogen Evol 43:430–451Google Scholar
  226. McNeill J, Barrie FR, Buck WR et al (eds) (2012) International Code of Nomenclature for algae, fungi, and plants (Melbourne Code) adopted by the Eighteenth International Botanical Congress Melbourne, Australia, July 2011. [Regnum Vegetabile no. 154.] A.R.G. Gantner Verlag, RuggellGoogle Scholar
  227. McTaggart AR, Shivas RG (2009) Tilletia challinorae McTaggart & RG Shivas, sp. nov. Persoonia 23:36Google Scholar
  228. Migheli Q, Cacciola SO, Balmas V, Pane A, Ezra D, di San Magnano, Lio G (2009) Mal secco disease caused by Phoma tracheiphila: a potential threat to lemon production worldwide. Plant Dis 93:852–867Google Scholar
  229. Mirabolfathy M, Groenewald JZ, Crous PW (2012) First report of Pilidiella granati causing dieback and fruit rot of pomegranate (Punica granatum) in Iran. Plant Dis 96:461Google Scholar
  230. Miranda BEC, Barreto RW, Crous PW, Groenewald JZ (2012) Pilidiella tibouchinase sp. nov. associated with foliage blight of Tibouchina granulose (quaresmeira) in Brazil. IMA Fungus 3:1–7Google Scholar
  231. Mitakakis TZ, Clift A, McGee PA (2001) The effect of local cropping activities and weather on the airborne concentration of allergenic Alternaria spores in rural Australia. Grana 40:230–239Google Scholar
  232. Mohammadi H, Gramaje D, Banihashemi Z, Armengol J (2013) Characterization of Diplodia seriata and Neofusicoccum parvum associated with grapevine decline in Iran. J Agric Sci Technol 15:603–616Google Scholar
  233. Mordue JEM, Gibson IAS (1976) CMI descriptions of pathogenic fungi and bacteria. Description no. 511. Kew Surrey, United Kingdom: Commonwealth Mycological InstituteGoogle Scholar
  234. Morera G, Robledo G, Ferreira-lopes V, Urcelay C (2017) South American Fomitiporia (Hymenochaetaceae, Basidiomycota) ‘jump on’ exotic living trees revealed by multi-gene phylogenetic analysis. Phytotaxa 321:277–286Google Scholar
  235. Mostert L, Crous PW, Ewald Groenewald JZ, Gams W, Summerbell RC (2003) Togninia (Calosphaeriales) is confirmed as teleomorph of Phaeoacremonium by means of morphology, sexual compatibility and DNA phylogeny. Mycologia 95:646–659Google Scholar
  236. Mostert L, Groenewald JZ, Summerbell RC, Robert V, Sutton DA, Padhye AA, Crous PW (2005) Species of Phaeoacremonium associated with infections in humans and environmental reservoirs in infected woody plants. J Clin Microbiol 43:1752–1767Google Scholar
  237. Mostert L, Groenewald JZ, Summerbell RC, Gams W, Crous PW (2006) Taxonomy and Pathology of Togninia (Diaporthales) and its Phaeoacremonium Anamorphs. Stud Mycol 54:1–113Google Scholar
  238. Murray GM, Brenan JP (1998) The risk to Australia from Tilletia indica, the cause of Karnal bunt of wheat. Australas Plant Pathol 27:212–225Google Scholar
  239. Murrill WA (1907) (Agaricales) Polyporaceae. N Am Flora 9:1–131Google Scholar
  240. Murrill WA (1914) Northern polypores. New York, USAGoogle Scholar
  241. Nachmias A, Barash I, Solel Z, Strobel GA (1979) Purification and characterization of a phytotoxin produced by Phoma tracheiphila, the causal agent of mal secco disease of citrus. Physiol Plant Pathol 10:147–157Google Scholar
  242. Nag Raj TR (1993) Coelomycetous anamorphs with appendage-bearing conidia. Mycologue Publications, Waterloo, CanadaGoogle Scholar
  243. Nannfeldt JA (1932) Studien uber die morphologie und systematik der nicht-lichenisierten inoperculaten discomyceten. Nova Acta Regiae Societatis Scientiarum Upsaliensis, ser. 4, 8:1±368Google Scholar
  244. Neergaard P (1945) Danish species of Alternaria and Stemphylium Google Scholar
  245. Ni XX, Li BT, Cai M, Liu XL (2012) First report of brown ring patch caused by Waitea circinata var. circinata on Agrostis stolonifera and Poa pratensis in China. Plant Dis 96:1821Google Scholar
  246. Nilsson RH, Hyde KD, Pawłowska J, Ryberg M, Tedersoo L, Bjørnsgard Aas AB, Alias SA, Alves A, Anderson CL, Antonelli A, Arnold AE, Bahnmann B, Bahram M, Bengtsson-Palme J, Berlin A, Branco S, Chomnunti P, Dissanayake A, Drenkhan R, Friberg H, Frøslev TG, Halwachs B, Hartmann M, Henricot B, Jayawardena R, Jumpponen A, Kauserud H, Koskela S, Kulik T, Liimatainen K, Lindahl BD, Lindner D, Liu J-K, Maharachchikumbura S, Manamgoda D, Martinsson S, Neves MA, Niskanen T, Nylinder S, Pereira OL, Pinho DB, Porter TM, Queloz V, Riit T, Sánchez-García M, de Sousa F, Stefańczyk E, Tadych M, Takamatsu S, Tian Q, Udayanga D, Unterseher M, Wang Z, Wikee S, Yan J, Larsson E, Larsson K-H, Kõljalg U, Abarenkov K (2014) Fungal Divers 67:11–19Google Scholar
  247. Nishimura S, Sugihara M, Kohmoto K, Otani H (1978) Two different phases in pathogenicity of the Alternaria pathogen causing black spot disease of Japanese pear. J Fac Agric Tottori Univ 13:1–10Google Scholar
  248. Núñez M, Ryvarden L (2000) East Asian polypores 1. Syn Fung 13:1–168Google Scholar
  249. Nylander JA, Ronquist F, Huelsenbeck JP, Nieves-Aldrey J (2004) Bayesian phylogenetic analysis of combined data. Syst Biol 53:47–67Google Scholar
  250. Okada G, Takematsu A, Gandjar I, Nakase T (1998) Morphology and molecular phylogeny of Tretopileus sphaerophorus, a synnematous hyphomycete with basidiomycetous affinities. Mycoscience 39:21–30Google Scholar
  251. Öpik M, Vanatoa A, Vanatoa E, Moora M, Davison J, Kalwij JM, Reier Ü, Zobel M (2010) The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota). New Phytol 188:223–241Google Scholar
  252. Pascoe IG, Priest MJ, Shivas RG, Cunnington JH (2005) Ustilospores of Tilletia ehrhartae, a smut of Ehrharta calycina, are common contaminants of Australian wheat grain, and a potential source of confusion with Tilletia indica, the cause of Karnal bunt of wheat. Plant Pathol 54:161–168Google Scholar
  253. Peever TL, Ibanez A, Akimitsu K, Timmer LW (2002) Worldwide phylogeography of the citrus brown spot pathogen, Alternaria alternata. Phytopathology 92:794–802Google Scholar
  254. Persoon CH (1818) Traite sur les champignons comestibles, contenant l’undication des especes nuisible precede d’une introduction a l’historie des Champignons–ParisGoogle Scholar
  255. Phillips AJL, Alves A, Correia A, Luque J (2005a) Two new species of Botryosphaeria with brown, 1-septate ascospores and Dothiorella anamorphs. Mycologia 97:513–529Google Scholar
  256. Phillips AJL, Rumbos IC, Alves A, Correia A (2005b) Morphology and phylogeny of Botryosphaeria dothidea causing fruit rot of olives. Mycopathologia 159:433–439Google Scholar
  257. Phillips AJL, Alves A, Abdollahzadeh J, Slippers B, Wingfield MJ, Groenewald JZ, Crous PW (2013) The Botryosphaeriaceae: genera and species known from culture. Stud Mycol 76:51–167Google Scholar
  258. Polizzotto R, Andersen B, Martini M, Grisan S, Assante G, Musetti R (2012) A polyphasic approach for the characterization of endophytic Alternaria strains isolated from grapevines. J Microbiol Methods 88:162–171Google Scholar
  259. Pordel A, Khodaparast SA, McKenzie EHC, Javan-Nikkhah M (2017) Two new species of Pseudopyricularia from Iran. Mycol Prog 16:729–736Google Scholar
  260. Pouzar Z (1985) Proposals for the conservation of five family names of fungi. Taxon 34:709–712Google Scholar
  261. Preuss CGT (1851) Übersicht untersuchter pilze besonders aus der Umgegend von Hoyerswerda. Linnaea 24:99–153Google Scholar
  262. Pryor BM, Gilbertson RL (2000) Molecular phylogenetic relationships amongst Alternaria species and related fungi based upon analysis of nuclear ITS and mt SSU rDNA sequences. Mycol Res 104:1312–1321Google Scholar
  263. Pu J, Xie Y, Zhang X, Qi Y, Zhang C, Liu X (2008) Preinfection behavior of Phyllosticta musarum on banana leaves. Australas Plant Pathol 37:60–64Google Scholar
  264. Raciborski M (1900) Elsinoe Rac. nov. gen. Magnusiellae affinis. Parasitische Algen und Pilze Java’s, Part I. 1900:14–15Google Scholar
  265. Rajchenberg M, Robledo G (2013) Pathogenic polypores in Argentina. For Pathol 43:171–184Google Scholar
  266. Reddy MVB, Angers P, Castaigne F, Arul J (2000) Chitosan effects on blackmold rot and pathogenic factors produced by Alternaria alternata in postharvest tomatoes. J Am Soc Hortic Sci 125:742–747Google Scholar
  267. Robledo G, Urcelay C (2009) Hongos de la madera de árboles nativos del centro de Argentina, 1ª ed, Universidad Nacional de Córdoba. CórdobaGoogle Scholar
  268. Roll-Hansen F, Roll-Hansen H (1969) Neofabraea populi on Populus tremula x Populus tremuloides in Norway. Comparison with the conidial state of Neofabraea malicorticis. Meddelelser fra Det Norske Skogforsøksvesen 27:215–226Google Scholar
  269. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574Google Scholar
  270. Rooney-Latham S, Gallegos LL, Vossen PM, Gubler WD (2013) First report of Neofabraea alba causing fruit spot on olive in North America. Plant Dis 97:1384Google Scholar
  271. Rooney-Latham S, Lutz M, Blomquist CL, Romberg MK, Scheck HJ, Piątek M (2017) Entyloma helianthi: identification and characterization of the casual agent of sunflower white leaf smut. Mycologia 109:520–528Google Scholar
  272. Rosa LH, Vaz ABM, Caligiorne RB, Campolina S, Rosa CA (2009) Endophytic fungi associated with the Antarctic grass Deschampsia antarctica Desv. (Poaceae). Polar Biol 32:161–167Google Scholar
  273. Rossman AY (2009) The impact of invasive fungi on agricultural ecosystems in the United States. Biol Invasions 11:97–107Google Scholar
  274. Rossman AY, Castlebury LA, Adams GC, Putnam ML (2002) Phlyctema vagabunda isolated from coin canker of ash trees in Michigan. Plant Dis 86:442Google Scholar
  275. Rossman AY, Farr DF, Castlebury LA (2007) A review of the phylogeny and biology of the Diaporthales. Mycoscience 48:135–144Google Scholar
  276. Rossman AY, Seifert KA, Samuels GJ, Minnis AM, Schroers HJ, Lombard L, Crous PW, Põldmaa K, Cannon PF, Summerbell RC, Geiser DM, Zhuang WY, Hirooka Y, Herrera C, Salgado-Salazar C, Chaverri P (2013) Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales) proposed for acceptance and rejection. IMA Fungus 4:41–51Google Scholar
  277. Runa F, Park M, Pryor B (2009) Ulocladium systematics revisited: phylogeny and taxonomic status. Mycol Prog 8:35–47Google Scholar
  278. Rungjindamai N, Sakayaroj J, Planingam N, Somrithipol S, Jones EBG (2008) Putative basidiomycete teleomorphs and phylogenetic placement of the coelomycete genera: Chaetospermum, Giulia and Mycotribulus based on nu-rDNA sequences. Mycol Res 112:802–810Google Scholar
  279. Ryvarden L, Gilbertson RL (1992) The Polyporaceae of Europe. Oslo: Fungiflora. 1994:1–2Google Scholar
  280. Saccardo PA (1877) Fungi italici autographice delineati. Hyphomycetes 23:124Google Scholar
  281. Saccardo PA (1882) Fungi boreali-americani. Michelia 2:564–582Google Scholar
  282. Sakayaroj J, Preedanon S, Suetrong S, Klasysuban A, Jones EG, Hattori T (2012) Molecular characterization of basidiomycetes associated with the decayed mangrove tree Xylocarpus granatum in Thailand. Fungal Divers 56:145–156Google Scholar
  283. Salvador-Montoya CA, Robledo GL, Cardoso D, Borba-Silva MA, Fernandes M, Drechsler-Santos ER (2015) Phellinus piptadeniae (Hymenochaetales: Hymenochaetaceae): taxonomy and host range of a species with disjunct distribution in South American seasonally dry forests. Plant Syst Evol 301:1887–1896Google Scholar
  284. Salvador-Montoya CA, Popoff OF, Reck M, Drechsler-Santos ER (2018) Taxonomic delimitation of Fulvifomes robiniae (Hymenochaetales, Basidiomycota) and related species in America: F. squamosa sp. nov. Plant Syst Evol 304:445–459Google Scholar
  285. Sami S, Mohommadi H, Heydarnejad J (2014) Phaeoacremonium species associated with necrotic wood of pome fruit trees in Iran. J Plant Pathol 96:487–495Google Scholar
  286. Samuels GJ, Barr ME, Lowen R (1993) Revision of Schizoparme (Diaporthales, Melanconidaceae). Mycotaxon 46:459–483Google Scholar
  287. Savchenko KG, Heluta VP, Hirylovich IS, Wasser SP, Nevo E (2012) Notes on some Eurasian species of Anthracoidea and Entyloma. Mycotaxon 121:53–62Google Scholar
  288. Savchenko KG, Carris LM, Castlebury LA, Heluta VP, Wasser SP, Nevo E (2014) Revision of Entyloma (Entylomatales, Exobasidiomycetes) on Eryngium. Mycologia 106:797–810Google Scholar
  289. Savchenko KG, Carris LM, Castlebury LA, Heluta VP, Wasser SP, Nevo E (2015) Entyloma scandicis, a new smut fungus on Scandix verna from Mediterranean forests of Israel. Mycotaxon 130:1061–1071Google Scholar
  290. Savile DBO (1947) A study of the species of Entyloma on North American composites. Can J Res 25c:105–120Google Scholar
  291. Scheffer RP (1997) The nature of disease in plants. Cambridge University Press, CambridgeGoogle Scholar
  292. Schoch CL, Crous PW, Wingfield MJ, Wingfield BD (2000) Phylogeny of Calonectria and selected hypocrealean genera with cylindrical microconidia. Stud Mycol 45:45–62Google Scholar
  293. Schoch CL, Crous PW, Wingfield BD, Wingfield MJ (2001) Phylogeny of Calonectria based on comparisons of ß-tubulin DNA sequences. Mycol Res 105:1045–1052Google Scholar
  294. Schoch CL, Shoemaker RA, Seifert KA, Hambleton S, Spatafora JW, Crous PW (2006) A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 1041–1052Google Scholar
  295. Schoch CL, Crous PW, Groenewald JZ, Boehm EWA, Burgess TI, De Gruyter J, De Hoog GS, Dixon LJ, Grube M, Gueidan C, Harada Y (2009) A class-wide phylogenetic assessment of Dothideomycetes. Stud Mycol 64:1–15Google Scholar
  296. Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W, Bolchacova E, Voigt K, Crous PW, Miller AN (2012) Nuclear ribosomal internal transcriber spacer (ITS) region as a universal DNA barcode marker for fungi. Proc Natl Acad Sci 109:6241–6246Google Scholar
  297. Schulz B, Wanke U, Draeger S, Aust HJ (1993) Endophytes from herbaceous plants and shrubs: effectiveness of surface sterilization methods. Mycol Res 97:1447–1450Google Scholar
  298. Seaver FJ (1951) The North American Cup-fungi (Inoperculates). Published by the author, New YorkGoogle Scholar
  299. Sebastianes FLS, Maki CS, Andreote FD, Araújo WL, Pizzirani-Kleiner AA (2007) Genetic variability and vegetative compatibility of Erythricium salmonicolor isolates. Sci Agric 64:162–168Google Scholar
  300. Seifert KA, Gams W (2011) The genera of Hyphomycetes–2011 update. Persoonia 27:article119Google Scholar
  301. Sharma P, Tiwari R, Saharan MS, Sharma I, Kumar J, Mishra S, Muthusamy SK, Gupta RK, Jaiswal S, Iquebal MA, Angadi UB, Kumar N, Fatma S, Rai A, Kumar D (2016) Draft genome sequence of two monosporidial lines of the Karnal bunt fungus Tilletia indica Mitra (PSWKBGH-1 and PSWKBGH-2). Genome Announc 4:e00928-16Google Scholar
  302. Shivas RG, Barrett MD, Barrett RL, McTaggart AR (2009) Tilletia micrairae. Persoonia 22:171–172Google Scholar
  303. Shivas RG, Beasley DR, McTaggart AR (2014) Online identification guides for Australian smut fungi (Ustilaginomycotina) and rust fungi (Pucciniales). IMA Fungus 5:195–202Google Scholar
  304. Shoemaker RA (1964) Conidial states of some Botryosphaeria species on Vitis and Quercus. Can J Bot 42:1297–1301Google Scholar
  305. Silva MAD, Correia KC, Câmara MPS, Gramaje D, Michereff SJ (2017) Characterization of Phaeoacremonium isolates associated with Petri disease of table grape in Northeastern Brazil, with description of Phaeoacremonium nordesticola sp. nov. Eur J Plant Pathol 149:1–15Google Scholar
  306. Silvestro D, Michalak I (2012) raxmlGUI: a graphical front-end for RAxML. Org Divers Evol 12:335–337Google Scholar
  307. Simmons EG (1992) Alternaria taxonomy: current status, viewpoint, challenge. In: Chelkowski J, Visconti A (eds) Alternaria biology, plant diseases and metabolites. Elsevier, Amsterdam, pp 1–35Google Scholar
  308. Simmons EG (1995) Alternaria themes and variations (112–144). Mycotaxon 55:55–163Google Scholar
  309. Simmons EG (2007) Alternaria, an identification manual. CBS Biodiversity Series 6. CBS Fungal Biodiversity Centre, Utrecht, The NetherlandsGoogle Scholar
  310. Sivanesan A (1977) The taxonomy and pathology of Venturia species, vol 59Google Scholar
  311. Sivanesan A (1984) The bitunicate Ascomycetes and their ananaorphs. J Cramer, VaduzGoogle Scholar
  312. Slippers B, Wingfield MJ (2007) Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact. Fungal Biol Rev 21:90–106Google Scholar
  313. Slippers B, Fourie G, Crous PW, Coutinho TA, Wingfield BD, Wingfield MJ (2004a) Multiple gene sequences delimit Botryosphaeria australis sp. nov. from B. lutea. Mycologia 96:1030–1041Google Scholar
  314. Slippers B, Crous PW, Denman S, Coutinho TA, Wingfield BD, Wingfield MJ (2004b) Combined multiple gene genealogies and phenotypic characters differentiate several species previously identified as Botryosphaeria dothidea. Mycologia 96:83–101Google Scholar
  315. Slippers B, Fourie G, Crous PW, Coutinho TA, Wingfield BD, Carnegie AJ, Wingfield MJ (2004c) Speciation and distribution of Botryosphaeria spp. on native and introduced Eucalyptus trees in Australia and South Africa. Stud Mycol 50:343–358Google Scholar
  316. Slippers B, Boissin E, Phillips AJ, Groenewald JZ, Lombard L, Wingfield MJ, Postma A, Burgess T, Crous PW (2013) Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework. Stud Mycol 76:31–49Google Scholar
  317. Smiley RW, Patterson LM (1996) Pathogenic fungi associated with Fusarium foot rot of winter wheat in the semiarid Pacific Northwest. Plant Dis 80:944–949Google Scholar
  318. Smiley RW, Dernoeden PH, Clarke BB (2005) Compendium of turfgrass disease. American Phytopathological Society Press, MinnesotaGoogle Scholar
  319. Soto-Alvear S, Lolas M, Rosales IM, Chávez ER, Latorre BA (2013) Characterization of the bull’s eye rot of apple in Chile. Plant Dis 97:485–490Google Scholar
  320. Spies CFJ, Moyo P, Halleen F, Mostert L (2018) Phaeoacremonium species diversity on woody hosts in the Western Cape Province of South Africa. Persoonia 40:26–62Google Scholar
  321. Spotts RA, Seifert KA, Wallis KM, Sugar D, Xiao CL, Serdani M, Henriquez JL (2009) Description of Cryptosporiopsis kienholzii and species profiles of Neofabraea in major pome fruit growing districts in the Pacific Northwest USA. Mycol Res 113:1301–1311Google Scholar
  322. Stalpers JA, Loerakker WM (1982) Laetisaria and Limonomyces species (Corticiaceae) causing pink diseases in turf grasses. Can J Bot 60:529–537Google Scholar
  323. Stewart RB (1957) Leaf blight and stem dieback of coffee caused by an undescribed species of Ascochyta. Mycologia 49:430–433Google Scholar
  324. Su YY, Cai L (2012) Polyphasic characterisation of three new Phyllosticta spp. Persoonia 28:article76Google Scholar
  325. Sultan A, Johnston PR, Park D, Robertson AW (2011) Two new pathogenic ascomycetes in Guignardia and Rosenscheldiella on New Zealand’s pygmy mistletoes (Korthalsella: Viscaceae). Stud Mycol 68:237–247Google Scholar
  326. Summerbell BA, Groenewald JZ, Carnegie AJ, Summerbell RC, Crous PW (2006) Eucalyptus microfungi known from culture. 2. Alysidiella, Fusculina and Phlogicylindrium genera nova, with notes on some other poorly known taxa. Fungal Divers 23:323–350Google Scholar
  327. Sunpapao A, Kittimorakul J, Pornsuriya C (2014) Disease Note: Identification of Curvularia oryzae as cause of leaf spot disease on oil palm seedlings in nurseries of Thailand. Phytoparasitica 42:529–533Google Scholar
  328. Surup F, Pommerehe K, Schroers HJ, Stadler M (2018) Elsinopirins A–D, Decalin Polyketides from the Ascomycete Elsinoe pyri. Biomolecules 8:article 8Google Scholar
  329. Sutton BC (1980) The Coelomycetes. Fungi imperfecti with pycnidia, acervuli and stromata. Commonwealth Mycological Institute, KewGoogle Scholar
  330. Swart L, Crous PW, Kang JC, Mchau GR, Pascoe I, Palm ME (2001) Differentiation of species of Elsinoe associated with scab disease of Proteaceae based on morphology, symptomatology and ITS sequence phylogeny. Mycologia 93:366–379Google Scholar
  331. Swofford DL (2002) PAUP*: phylogenetic analysis using parsimony (* and other methods). Sunderland, MAGoogle Scholar
  332. Talbot PHB (1965) Studies on ‘Pellicularia’ and associated genera of hymenomycetes. Persoona 3:371–406Google Scholar
  333. Tan MK, Timmer LW, Broadbent P, Priest M, Cain P (1996) Differentiation by molecular analysis of Elsinoe spp. causing scab disease of citrus and its epidemiological implications. Phytopathology 86:1039–1044Google Scholar
  334. Taylor K, Barber PA, Hardy GEStJ, Burgess TI (2009) Botryosphaeriaceae from tuart (Eucalyptus gomphocephala) woodland, including descriptions of four new species. Mycol Res 113:337–353Google Scholar
  335. Teixeira AR (1950) Himenomicetos brasileiros–V Polyporaceae 2. Bragantia 10:113–122Google Scholar
  336. Tennakoon DS, Phookamsak R, Wanasinghe DN, Yang JB, Lumyong S, Hyde KD (2017) Morphological and phylogentic insights resolve Plenodomus sinensis (Leptosphariaceae) as a new species. Phytotaxa 324:73–82Google Scholar
  337. Thambugala KM, Daranagama DA, Phillips AJ, Bulgakov TS, Bhat DJ, Camporesi E, Bahkali AH, Eungwanichayapant PD, Liu ZY, Hyde KD (2017) Microfungi on Tamarix. Fungal Divers 82:239–306Google Scholar
  338. Thomma BPHJ (2003) Alternaria spp.: from general saprophyte to specific parasite. MolPlant Pathol 4:225–236Google Scholar
  339. Thompson GE (1939) A canker disease of poplars caused a new species of Neofabraea. Mycologia 31:455–465Google Scholar
  340. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid Res 25:4876–4882Google Scholar
  341. Toda T, T Mushika, Hayakawa T, Tanaka A, Tani T, Hyakumachi M (2005) Brown ring patch: a new disease on bentgrass caused by Waitea circinata. Plant Dis 89:536–542Google Scholar
  342. Tulsane LR, Tulsane C (1847) Mémoire sur less ustilaginées compares aux Uréinées. Ann Sci Nat Bot Sér3 7:12–127 + Pls.2–7Google Scholar
  343. Udayanga D, Liu X, McKenzie EHC, Chukeatirote E, Bahkali AHA, Hyde KD (2011) The genus Phomopsis: biology, applications, species concepts and names of common phytopathogens. Fungal Divers 50:189–225Google Scholar
  344. Udayanga D, Manamgoda DS, Li XZ, Chukeatirote E, Hyde KD (2013) What are the common anthracnose pathogens of tropical fruits? Fungal Divers 61:165–179Google Scholar
  345. Udayanga D, Castlebury LA, Rossman AY, Chukeatirote E, Hyde KD (2014a) Insights into the genus Diaporthe: phylogenetic species delimitation in the D. eres species complex. Fungal Divers 67:203–229Google Scholar
  346. Udayanga D, Castlebury LA, Rossman AY, Hyde KD (2014b) Species limits in Diaporthe: molecular re-assessment of D. citri, D.cytosporella, D. foeniculina and D. rudis. Persoonia 32:83–101Google Scholar
  347. Úrbez-Torres JR, Haag P, Bowen P, O’Gorman DT (2014) Grapevine trunk diseases in British Columbia: incidence and characterization of the fungal pathogens associated with esca and Petri diseases of grapevine. Plant Dis 98:456–468Google Scholar
  348. Urcelay C, Rajchenberg M, Domínguez L (1999) Algunos Hongos xilófilos (Aphyllophorales, Tremellales) poco conocidos para la región Chaqueña. Kurtziana 27:251–256Google Scholar
  349. Vailllancourt LJ, Hartman JR (2000) Apple scab. The plant health instructor.
  350. Van der Aa HA (1973) Studies in Phyllosticta I. Stud Mycol 5:1–110Google Scholar
  351. van Niekerk JM, Groenewald JZE, Verkley GJM, Fourie PH, Wingfield MJ, Crous PW (2004) Systematic reappraisal of Coniella and Pilidiella, with specific reference to species occurring on Eucalyptus and Vitis in South Africa. Mycol Res 108:283–303Google Scholar
  352. Vánky K (1994) European smut fungi. Gustav Fischer Verlag, Stuttgart, GermanyGoogle Scholar
  353. Vánky K (2009) Taxonomic studies on Ustilaginomycetes—29. Mycotaxon 110:289–324Google Scholar
  354. Vánky K (2011) Bambusiomyces, a new genus of smut fungi (Ustilaginomycetes). Mycol Balc 8:141–145Google Scholar
  355. Vánky K (2012) Smut fungi of the world. APS Press, St. PaulGoogle Scholar
  356. Vánky K, Shivas RG (2008) Fungi of Australia: the smut fungi. CSIRO Publishing, MelbourneGoogle Scholar
  357. Vegh I, Bourgeois M, Bousquert JF, Velastegui J (1974) Contribution á I’étude du Phoma exigua Desm., champignon pathogéne associé au dépérissement de la pervenche mineure (Vinca minor L.) médicinale. Bull Soc Mycol de France 90:121–130Google Scholar
  358. Verkley GJM (1999) A monograph of the genus Pezicula and its anamorphs. Stud Mycol 44:1–180Google Scholar
  359. Verma VS, Gupta VK (2010) First report of Curvularia lunata causing root rot of strawberry in India. Plant Dis 94:477Google Scholar
  360. Vlasák J, Kout J (2011) Pileate Fomitiporia species in the USA. New combinations Fomitiporia calkinsii and F. bakeri. Mycol Prog 10:445–452Google Scholar
  361. Vlasak J, Vlasak Jr J (2016) Two new polypore species from the southwestern USA: Fomitiporia fissurata and F. deserticola. Mycotaxon 131:193–203Google Scholar
  362. Von Arx JA (1973) Centraalbureau voor Schimmelcultures Baarn and Delft. Progress Reports 1972. Verhandelingen der Koninklijke Nederlandsche Akademie van Wetenschappen, Afdeling Natuurkunde 61:59–81Google Scholar
  363. Von Arx JA (1981) The genera of fungi sporulating in Pure culture, 3rd edn. J Cramer, VaduzGoogle Scholar
  364. Von Arx JA, Müller E (1954) Die gattungen der amerosporen pyrenomyceten. Beiträge zur kryptogamenflora der Schweiz 11(1):1–159Google Scholar
  365. Von Arx JA, Müller E (1975) A re-evaluation of the bitunicate Ascomycetes with keys to families and genera. Stud Mycol 9:1–159Google Scholar
  366. von Esenbeck CGN (1816) Das system der pilze und schwämme. Wurzburg, GermanyGoogle Scholar
  367. von Höhnel F (1918) Dritte vorlaufige Mitteilung mycologischer Ergebnisse (Nr. 201–304). Berichte der Deutschen Botanischen Gesellschaft 36:09–317Google Scholar
  368. Wagner T, Fischer M (2001) Natural groups and a revised system for the European poroid Hymenochaetales (Basidiomycota) supported by nLSU rDNA sequence data. Mycol Res 105:773–782Google Scholar
  369. Wagner T, Fischer M (2002) Proceedings towards a natural classification of the worldwide taxa Phellinus s.l. and Inonotus s.l., and phylogenetic relationships of allied genera. Mycologia 94:998–1016Google Scholar
  370. Wallroth CFW (1833) Flora Cryptogamica Germaniae Sectio 2. Germany, J.L, Schrag, NürnbergGoogle Scholar
  371. Wanasinghe DN, Phukhamsakda C, Hyde KD, Jeewon R, Lee HB, Jones EBG, Tibpromma S, Tennakoon DS, Dissanayake AJ, Jayasiri SC, Gafforov Y, Camporesi E, Bulgakov TS, Ekanayake AH, Perera RH, Samarakoon MC, Goonasekara ID, Mapook A, Li WJ, Senanayake IC, Li JF, Norphanphoun C, Doilom M, Bahkali AH, Xu JC, Mortimer PE, Tibell L, Tibel S, Karunarathna SC (2018) Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae. Fungal Divers 89:1–236Google Scholar
  372. Wang L, Sun X, Wei JG, Lou JF, Guo LD (2015a) A new endophytic fungus Neofabraea illicii isolated from Illicium verum. Mycoscience 56:332–339Google Scholar
  373. Wang QM, Begerow D, Groenewald M, Liu XZ, Theelen B, Bai FY, Boekhout T (2015b) Multigene phylogeny and taxonomic revision of yeats and related fungi in the Ustilaginomycotina. Stud Mycol 81:55–83Google Scholar
  374. Warcup JH, Talbot PHB (1962) Ecology and identity of mycelia isolated from soil. Trans Br Mycol Soc. 45:495–518Google Scholar
  375. Watkins JE, Gaussoin RE, Riordan TP (1989) G89-925 Helminthosporium leaf spot and melting out diseases of turfgrass (Revised December 1995). Historical materials from University of Nebraska-Lincon ExtensionGoogle Scholar
  376. Wenneker M, Pham KTK, Boekhoudt LC, de Boer FA, van Leeuwen PJ, Hollinger TC, Thomma BPHJ (2017) First report of Neofabraea kienholzii causing bull’s eye rot on pear (Pyrus communis) in the Netherlands. Plant Dis 101:634Google Scholar
  377. Wijayawardene NN, Crous PW, Kirk PM, Hawksworth DL, Boonmee S, Braun U, Dai DQ, Dsouza MJ, Diederich P, Dissanayake AJ, Doilom M, Hongsanan S, Jones EBG, Groenewald JZ, Jayawardena R, Lawrey JD, Liu JK, Lücking R, Madrid H, Manamgoda DS, Muggia L, Nelsen MP, Phookamsak R, Suetrong S, Tanaka K, Thambugala KM, Wanasinghe DN, Wikee S, Zhang Y, Aproot A, Ariyawansa HA, Bahkali AH, Bhat DJ, Gueidan C, Chomnunti P, De Hoog GS, Knudsen K, Li WJ, McKenzie EHC, Miller AN, Phillips AJL, Piątek M, Raja HA, Shivas RS, Slippers B, Taylor JE, Tian Q, Wang Y, Woudenberg JHC, Cai L, Jaklitsch WM, Hyde KD (2014) Naming and outline of Dothideomycetes—2014 including proposals for the protection or suppression of generic names. Fungal Divers 69:1–55Google Scholar
  378. Wijayawardene NN, Hyde KD, Wanasinghe DN, Papizadeh M, Goonasekara ID, Camporesi E, Bhat JD, McKenzie EHC, Phillips AJL, Diederich P, Tanaka K, Li WJ, Tangthirasunun N, Phookamsak R, Dai D-Q, Dissanayake AJ, Weerakoon G, Maharachchikumbura SSN, Hashimoto A, Matsumura M, Wang Y (2016) Taxonomy and phylogeny of dematiaceous coelomycetes. Fungal Divers 77:1–316Google Scholar
  379. Wijayawardene NN, Hyde KD, Tibpromma S, Wanasinghe DN, Thambugala KM, Tian Q, Wang Y (2017a) Towards incorporating asexual fungi in a natural classification: checklist and notes 2012–2016. Mycosphere 8:1457–1554Google Scholar
  380. Wijayawardene NN, Hyde KD, Rajeshkumar KC, Hawksworth DL, Madrid H, Kirk PM, Braun U, Singh RV, Crous PW, Kukwa M, Lücking R, Kurtzman CP, Yurkov A, Haelewaters D, Aproot A, Lumbsch HT, Timdal E, Ertz D, Etayo J, Phillips AJL, Groenewald JZ, Papizadeh M, Selbmann L, Dayarathne MC, Weerakoon G, Jones EBG, Suetrong S, Tian Q, Castañeda-Ruiz RF, Bahkali AH, Pang KL, Tanaka K, Dai DQ, Sakayaroj J, Hujslová M, Lombard L, Shenoy BD, Suija A, Maharachchikumbura SSN, Thambugala KM, Wanasinghe DN, Sharma BO, Gaikwad S, Pandit G, Zucconi L, Onofri S, Egidi E, Raja HA, Kodsueb R, Cáceres MES, Pérez-Ortega S, Fiuza PO, Monteiro JS, Vasilyeva LN, Shivas RG, Prieto M, Wedin M, Olariaga I, Lateef AA, Agrawal Y, Fazeli SAS, Amoozegar MA, Zhao GZ, Pfliegler WP, Sharma G, Oset M, Abdel-Wahab MA, Takamatsu S, Bensch K, de Silva NI, De Kesel A, Karunarathna A, Boonmee S, Pfister DH, Luo ZL, Boonyuen N, Daranagama DA, Senanayake IC, Jayasiri SC, Samarakoon MC, Zeng XY, Doilom M, Quijada L, Rampadarath S, Heredia G, Dissanayake AJ, Jayawardena RS, Perera RH, Tang LZ, Phukhamsakda C, Hernández-Restrepo M, Ma X, Tibpromma S, Gusmao LFP, Weerahewa D, Karunarathna SC (2017b) Notes for genera: Ascomycota. Fungal Divers 86:1–594Google Scholar
  381. Wijayawardene NN, Hyde KD, Lumbsch HT, Liu JK, Maharachchikumbura SSN, Ekanayaka AH, Tian Q, Phookamsak R (2018) Outline of Ascomycota: 2017. Fungal Divers 88:167–263Google Scholar
  382. Wikee S, Udayanga D, Crous PW, Chukeatirote E, McKenzie EHC, Bahkali AH, Dai DQ, Hyde KD (2011) Phyllosticta—an overview of current status of species recognition. Fungal Divers 51:43–61Google Scholar
  383. Wikee S, Lombard L, Crous PW, Nakashima C, Motohashi K, Chukeatirote E, Alias SA, McKenzie EHC, Hyde KD (2013a) Phyllosticta capitalensis, a widespread endophyte of plants. Fungal Divers 60:91–105Google Scholar
  384. Wikee S, Jaidee P, Wongkam S, Mckenzie EHC, Hyde KD, Chukeatirote E (2013b) Antimicrobial activity of crude extracts of Phyllosticta spp. Mycologia 4:112–117Google Scholar
  385. Wikee S, Lombard L, Nakashima C, Motohashi K, Chukeatirote E, Cheewangkoon R, McKenzie EHC, Hyde KD, Crous PW (2013c) A phylogenetic re-evaluation of Phyllosticta (Botryosphaeriales). Stud Mycol 76:1–29Google Scholar
  386. Wingfield MJ, De Beer W, Slippers B, Wingfield BD, Groenewald JZ, Lombard L, Crous PW (2012) One fungus, one name promotes progressive plant pathology. Mol Plant Pathol 13:604–613Google Scholar
  387. Woudenberg JHC, Groenewald JZ, Binder M, Crous PW (2013) Alternaria redefined. Stud Mycol 75:171–212Google Scholar
  388. Woudenberg JHC, van der Merwe NA, Jurjević Ž, Groenewald JZ, Crous PW (2015) Diversity and movement of indoor Alternaria alternate across the mainland USA. Fungal Gen Biol 81:62–72Google Scholar
  389. Wright JE, Blumenfeld SN (1984) New South Americal species of Phellinus (Hymenochaetaceae). Mycotaxon 21:413–425Google Scholar
  390. Wu HX, Schoch CL, Boonmee S, Bahkali AH, Chomnunti P, Hyde KD (2011) A reappraisal of Microthyriaceae. Fungal Divers 51:189–248Google Scholar
  391. Wu SP, Liu YX, Yuan J, Wang Y, Hyde KD, Liu ZY (2014) Phyllosticta species from banana (Musa sp.) in Chongqing and Guizhou provinces, China. Phytotaxa 188:135–144Google Scholar
  392. Wulandari NF, To-anun C, Hyde KD, Durong LM, De Gruyter J, Meffert JP, Groenewald JZ, Crous PW (2009) Phyllosticta citriasianum sp nov., the causes of Citrus tan spot of Citrus maxima (Pamelo). Fungal Divers 34:23–39Google Scholar
  393. Ryvarden L (2004) Neotropical polypores: Part 1: introduction, Ganodermataceae & Hymenochaetaceae. FungifloraGoogle Scholar
  394. Yang SL, Chung KR (2010) Transcriptional regulation of Elsinochrome phytotoxin biosynthesis by an EfSTE12 activator in the citrus scab pathogen Elsinoe fawecettii. Fungal Biol 114:64–73Google Scholar
  395. Yang T, Groenewald JZ, Cheewangkoon R, Jami F, Abdollahzadeh J, Lombard L, Crous PW (2017) Families, genera, and species of Botryosphaeriales. Fungal Biol 121:322–346Google Scholar
  396. Zan LF, Bao HY, Bau T, Li YA (2015) New antioxidant pyrano[4,3-c][2]benzopyran-1,6-dione derivative from the medicinal mushroom Fomitiporia ellipsoidea. Nat Product Commun 10(2):315–316Google Scholar
  397. Zhang N, Zhao S, Shen Q (2011a) A six-gene phylogeny reveals the evolution of mode of infection in the rice blast fungus and allied species. Mycologia 103:1267–1276Google Scholar
  398. Zhang Y, Crous P, Schoch C, Bahkali A, Guo L, Hyde KD (2011b) A molecular, morphological and ecological re-appraisal of Venturiales—a new order of Dothideomycetes. Fungal Divers 51:249–277Google Scholar
  399. Zhang W, Nan ZB, Liu GD (2013) First report of Limonomyces roseipellis causing pink patch on Bermudagrass in south China. Plant Dis 97:561Google Scholar
  400. Zhang J, Dou Z, Zhou Y, He W, Zhang X, Zhang Y (2016) Venturia sinensis sp. nov. a new ventuarialean ascomycete from Khingan Mountains. Saudi J Biol Sci 23:592–597Google Scholar
  401. Zhao Q, Xie XW, Shi YX, Chai AL, Li BJ (2016) Boeremia leaf and fruit spot of okra caused by Boeremia exigua in China. Can J Plant Pathol 38:395–399Google Scholar
  402. Zhou LW (2014) Fulvifomes hainanensis sp. nov. and F. indicus comb.nov. (Hymenochaetales, Basidiomycota) evidenced by a combination of morphology and phylogeny. Mycoscience 55:70–77Google Scholar
  403. Zhou LW (2015) Fulviformes imbricatus and F. thailandicus (Hymenochaetales, Basidiomycota): two new species from Thailand based on morphological and molecular evidence. Mycol Prog 14:article89Google Scholar
  404. Zhou LW, Xue HJ (2012) Fomitiporia pentaphylacis and F. tenuitubus spp. nov. (Hymenochaetales, Basidiomycota) from Guangxi, southern China. Mycol Prog 11:907–913Google Scholar
  405. Zhu L, Wang X, Huang F, Zhang J, Li H, Hyde KD, Ding D (2012) A destructive new disease of Citrus in China caused by Cryptosporiopsis citricarpa sp. nov. Plant Dis 96:804–812Google Scholar

Copyright information

© School of Science 2019

Authors and Affiliations

  • Ruvishika S. Jayawardena
    • 1
    • 2
  • Kevin D. Hyde
    • 1
    • 2
    • 3
  • Rajesh Jeewon
    • 4
  • Masoomeh Ghobad-Nejhad
    • 5
  • Dhanushka N. Wanasinghe
    • 3
    • 6
  • NingGuo Liu
    • 2
    • 16
  • Alan J. L. Phillips
    • 7
  • José Ribamar C. Oliveira-Filho
    • 8
  • Gladstone A. da Silva
    • 8
  • Tatiana B. Gibertoni
    • 8
  • P. Abeywikrama
    • 2
    • 9
  • L. M. Carris
    • 10
  • K. W. T. Chethana
    • 2
    • 9
  • A. J. Dissanayake
    • 2
  • S. Hongsanan
    • 11
  • S. C. Jayasiri
    • 2
  • A. R. McTaggart
    • 12
  • R. H. Perera
    • 2
  • K. Phutthacharoen
    • 2
  • K. G. Savchenko
    • 13
  • R. G. Shivas
    • 14
  • Naritsada Thongklang
    • 2
  • Wei Dong
    • 2
    • 15
  • DePing Wei
    • 2
    • 15
  • Nalin N. Wijayawardena
    • 2
  • Ji-Chuan Kang
    • 1
    Email author
  1. 1.The Engineering Research Center of Southwest Biopharmaceutical Resources, Ministry of EducationGuizhou UniversityGuiyangPeople’s Republic of China
  2. 2.Center of Excellence in Fungal ResearchMae Fah Luang UniversityChiang RaiThailand
  3. 3.Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of BotanyChinese Academy of SciencesKunmingPeople’s Republic of China
  4. 4.Department of Health Sciences, Faculty of ScienceUniversity of MauritiusReduitMauritius
  5. 5.Department of BiotechnologyIranian Research Organization for Science and Technology (IROST)TehranIran
  6. 6.World Agroforestry Centre, East and Central AsiaKunmingPeople’s Republic of China
  7. 7.Universidade de Lisboa, Faculdade de CiênciasBiosystems and Integrative Sciences Institute (BioISI)LisbonPortugal
  8. 8.Departamento de MicologiaUniversidade Federal de PernambucoRecifeBrazil
  9. 9.Beijing Key Laboratory of Environmet Friendly Management on Fruit Disease and Pests in North China, Institute of Plant and Environment ProtectionBeijing Academy of Agriculture and Forestry SciencesBeijingPeople’s Republic of China
  10. 10.Department of Plant PathologyWashington State UniversityPullmanUSA
  11. 11.College of Life Science and OceanographyShenZhen UniversityShenzhenChina
  12. 12.Queensland Alliance for Agriculture and Food InnovationThe University of QueenslandBrisbaneAustralia
  13. 13.Department of Biological SciencesButler UniversityIndianapolisUSA
  14. 14.Centre for Crop HealthUniversity of Southern QueenslandToowoombaAustralia
  15. 15.Department of Entomology and Plant Pathology, Faculty of AgricultureChiang Mai UniversityChiang MaiThailand
  16. 16.Faculty of Agriculture, National Resources and EnvironmentNaresuan UniversityPhitsanulokThailand

Personalised recommendations