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3 Biotech

, 9:168 | Cite as

Evolution of endonuclease IV protein family: an in silico analysis

  • Swarna Kanchan
  • Parva Sharma
  • Shibasish ChowdhuryEmail author
Original Article
  • 24 Downloads

Abstract

DNA repair is one of the key cellular events which balances between evolvability and integrity of the genome. Endonuclease IV enzymes are class II AP endonucleases under base excision repair pathway which act on abasic site and break the phosphodiester bond at the 5′ side. The role and activity of endonuclease IV proteins vary among different organisms; even it is absent in higher eukaryotes. The evolution of this protein family was studied by analyzing all homologs of the endonuclease IV protein family through different in silico techniques including phylogenetic tree generation and model building. The sequence analysis revealed four consensus sequence motifs within the AP2EC domain which are functionally important and conserved throughout the evolution process. It was also observed that the species and endonuclease IV gene evolution shape up differently in most of the organisms. Presence of the mitochondria-targeted signal peptides in fungal species Saccharomyces and Coccidioides suggest a possible endosymbiotic transfer of endonuclease IV genes to lower eukaryotes. Evolutionary changes among various clades in the protein-based phylogenetic tree have been investigated by comparison of homology models which suggests the conservation of overall fold of endonuclease IV proteins except for few alterations in loop orientation in few clades.

Keywords

AP endonuclease Endonuclease IV Evolution Phylogenetic analysis Horizontal gene transfer 

Notes

Acknowledgements

The authors acknowledge the financial support from the University Grant Commission, Government of India in the form of Basic Science Research fellowship.

Compliance with ethical standards

Conflict of interest

The authors declare that they have no conflict of interest.

Supplementary material

13205_2019_1696_MOESM1_ESM.docx (58 kb)
Supplementary material 1 (DOCX 57 kb)

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Copyright information

© King Abdulaziz City for Science and Technology 2019

Authors and Affiliations

  1. 1.Department of Biological SciencesBirla Institute of Technology and Science, PilaniPilaniIndia

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