Pseudamnicola Paulucci, 1878 (Caenogastropoda: Truncatelloidea) from the Aegean Islands: a long or short story?
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Abstract
The aims of the study were (i) to reveal the pattern of phylogeny of Pseudamnicola inhabiting the Aegean Islands, (ii) to describe and analyse the variation of the morphology in 17 populations of Pseudamnicola from the springs on the Aegean Islands not studied so far and considering also another seven populations studied earlier and (iii) to find out which model is more applicable to the island Pseudamnicola populations: either a model in which a relict fauna rich in endemics is differentiated in a way that mainly reflects the geological history of the area or a model in which a relatively young fauna is composed of more or less widely distributed taxa, with relatively high levels of gene flow among the springs they inhabit. To address the above issues, the morphology and the mitochondrial genes—cytochrome oxidase subunit I (COI) and ribosomal 16S—and nuclear genes—ribosomal 18S, 28S and histone 3 (H3)—were analysed. COI and COI+16S rRNA+18S datasets gave trees with identical topology in both ML and Bayesian inference. The 24 studied populations of Pseudamnicola form 16 clades, each of them generally having low levels of intrapopulation genetic differentiation. The generalised mixed Yule coalescent (GMYC) procedure and the Automatic Barcode Gap Discovery (ABGD) analysis for COI identified 16 Pseudamnicola entities coinciding with clades of the ML tree based on 44 haplotypes and 189 sequences. The present pattern of diversity, together with dating of divergence time, reflects a short story of colonisation/recolonisation, supported by the Late Pleistocene land bridges, rather than the consequences of earlier geological events. The principal component analysis (PCA) on the shells of the molecularly distinct clades showed differences, although variability ranges often overlap. Female reproductive organs showed no differences between the clades, and penile characters differed only in some cases.
Keywords
mtDNA Phylogeography Gastropods Hydrobiidae Mediterranean BasinIntroduction
The history of the Mediterranean Basin is complex as a result of (i) tectonic events, e.g. the northward movement of the African tectonic plate and the eastward displacement of the Anatolian microplate; (ii) volcanic activity, e.g. the creation of new islands; and (iii) several climatic changes that caused sea level fluctuations, such as those that occurred during the glacial/interglacial periods of the Pleistocene. These events may significantly influence divergence in species richness and dispersion through the creation of favourable conditions for allopatric speciation by, for example, submergence and re-emergence of landmasses. It should be noted that the present geography of the Aegean is no more than 8–6 kya old (Kougioumoutzis et al. 2014 and references therein). Since the peak of the Wisconsin-Würm glaciation (24–10 kya), global sea level has risen 120–130 m and the Aegean Islands now lie where there was once dry land. In the Late Pleistocene, the eastern Aegean Islands were connected with Anatolia, and the strait between Europe and the Cyclade-mega-island, connecting the present Naxos, Paros, Tinos and Andros, was rather narrow (Kougioumoutzis et al. 2014).
Freshwater snails inhabiting springs on the islands—as ‘island on island’ habitats—are interesting organisms for the study of the relationships between geological events and phylogeography, but surprisingly, they are rarely used as subjects in this kind of study (e.g. Szarowska et al. 2014a, b). The genus Pseudamnicola Paulucci, 1878, contains species found in the Netherlands, Spain, France, Italy, the southern Balkans, Romania, Turkey and Cyprus, but the systematics of this group is poorly understood.
In Greece, six nominal species of Pseudamnicola have been distinguished based only on the shells (Schütt 1980; Szarowska et al. 2006). Four of those species are inhabiting the insular region [Pseudamnicola brachia (Westerlund, 1886), Pseudamnicola chia (Martens, 1889), Pseudamnicola negropontina (Clessin, 1878) and Pseudamnicola pieperi (Schütt 1980)]. Two are known from continental Greece [Pseudamnicola exilis (Frauenfeld, 1863) and Pseudamnicola macrostoma (Küster, 1853)]. The taxonomy of this genus is poorly understood, its shells are highly variable and its anatomy is simple (due to miniaturisation along with inevitably similar adaptations to internal fertilisation and development in freshwater) and variable even within a single population (Szarowska and Falniowski 2011). Therefore, morphology alone is insufficient to resolve the systematics of this group, hence the need for molecular data. For the Balkans Pseudamnicola, molecular data (cytochrome oxidase subunit I (COI), 18S) are available for P. macrostoma (Radea et al. 2013) from Attica, P. negropontina from Evvoia Island (Szarowska et al. 2006) and P. exilis (Szarowska and Falniowski 2011) from the southern Peloponnese and Kythira Island. However, it must be stressed that Schütt (1980) expanded the range of P. exilis for a large part of the Aegean, despite the fact that the species was described in northern Greece; thus, assignment of the Peloponnese and Kythira Island populations to P. exilis is doubtful and is certainly not representative of a single species (Szarowska and Falniowski 2011).
The aims of the present study were (i) to reveal, using molecular markers, the pattern of phylogeny of Pseudamnicola inhabiting the Aegean Islands; (ii) to describe and analyse the variation of the morphology of the shell and anatomical characters from 17 populations of Pseudamnicola from the Aegean Islands; and (iii) to find out which of the two models is more applicable to the island Pseudamnicola populations: either a model in which a relict fauna rich in endemics is differentiated in a way that mainly reflects the geological history of the area or a model in which a relatively young fauna is composed of more or less widely distributed taxa, with relatively high levels of gene flow among the springs they inhabit. To address the above issues, the morphology and the mitochondrial genes (COI and ribosomal 16S), as well as nuclear genes (ribosomal 18S, 28S and histone 3 (H3)), were analysed.
Materials and methods
Sample collection and fixation
The sampling localities with their geographical coordinates and the haplotypes for COI, 16S rRNA and 18S rRNA, H3, 28S genes detected in each locality. Sequences from GenBank are also included: EVV (Radea et al. 2013), ATT (Szarowska et al. 2006), OUT (Wilke et al. 2001) and sequences of COI and 18S rRNA for populations from Peloponnese and Kithira Island (JF921885–JF921922 for COI and JF921877–JF921884 for 18S rRNA; Szarowska and Falniowski 2011)
| ID | Site | Altitude m a.s.l. | Coordinates | COI | 16S | 18S | H3 | 28S | |
|---|---|---|---|---|---|---|---|---|---|
| Andros | |||||||||
| A01 | Pitrofos, small fountain at the road, on weeds’ roots, with Bythinella | 328 | 37° 48′ 44″ N | 24° 52′ 35″ E | 7xhA1 | 3xhA1 | 2xhA1 | hA1 | |
| A03 | S of Lámira, small outflow from spring, through concrete channel, on algae, also over the water | 173 | 37° 49′ 47″ N | 24° 54′ 42″ E | hA1, 6xhA2, hA3 | 5xhA2 | 2xhA1 | hA1 | hA1 |
| A04 | Aghios Georghios Faralis, spring forming small pool below the church, 0.5 m deep, with Myriophyllum and fallen leaves of Platanum, with Bythinella, Pseudamnicola on floating leaves and concrete walls | 362 | 37° 46′ 23″ N | 24° 53′ 45″ E | 6xhA2 | 2xhA2 | 2xhA1 | ||
| A05 | Amoniakleon, small (<1 m2) concrete tank filled by spring, with Bythinella, on stones and tree roots | 160 | 37° 45′ 07″ N | 24° 56′ 04″ E | 5xhA4 | 2xhA3 | 2xhA1 | hA1 | hA1 |
| A06 | Livadhia, on fallen Platanum leaves, also nearly dry, on concrete wetted with water from fountain | 92 | 37° 49′ 20″ N | 24° 55′ 52″ E | 2xhA2, 4xhA4 | 2xhA4 | 2xhA1 | ||
| A08 | Koumari, small spring below the road, with Bythinella | 135 | 37° 54′ 23″ N | 24° 44′ 19″ E | 6xhA5, hA6 | 2xhA5 | 2xhA1 | ||
| Khios | |||||||||
| CH02 | Between Leptópodha and Amádhes, fountain forming a small tank, with Bythinella and Daphniola | 390 | 38° 34′ 23″ N | 25° 59′ 12″ E | 10xhCH1, 2xhCH2, hCH3 | 12xhCH1 | 2xhA1 | ||
| CH03 | Ághios Gálas, small natural spring below the entrance to the cave, on stones covered with algae | 197 | 38° 33′ 44″ N | 25° 51′ 38″ E | 9xhCH1, hCH2, hCH4, hCH5 | 3xhCH2 | 2xhA1 | hA1 | hA1 |
| Crete | |||||||||
| K03 | Almiros of Gheorghioupoulo (Limni Almyros), a very large spring, rich in water, with numerous Theodoxus on stones, and much less numerous Heleobia and Pseudamnicola and rare Bythinella, on small spots of detritus on the bottom; during storms brackish habitat | 3 | 35° 21′ 39″ N | 24° 15′ 11″ E | 3xhC1, 6xhC2, hC3 | 3xhC1 | 2xhA1 | hA1 | hA1 |
| Karpathos | |||||||||
| KAR01 | Aperi, small spring in a valley, little water percolating through weeds and fallen leaves, drained by a pipe | 239 | 35° 32′ 58″ N | 27° 10′ 19″ E | 7xhKAR1, 3xhKAR2 | 2x hKAR1 | 2xhA1 | 2xhR1 | 2xhA1 |
| Kythira | |||||||||
| KIT03 | Karavas, large spring in the form of a big, shallow, artificial pond | 66 | 36° 20′ 50″ N | 22° 56′ 57″ E | hKIT1, 2xhKIT2, hKIT3, hKIT4, hKIT5, hKIT6, hKIT7 | 2xhKIT1 | 6xhA1 | 2xhA1 | 2xhA1 |
| KIT04 | Viaradika, medium-sized but rich in water fountain near the road, on weeds and gravel, with Bythinella | 203 | 36° 14′ 24″ N | 22° 59′ 48″ E | 5xhKIT8, 4xhKIT9 | 1xhKIT2 | 8xhA1 | ||
| Naxos | |||||||||
| N01 | Aghio Kyriaki, Mesi Potamia, small fountain, with Bythinella | 213 | 37° 04′ 09″ N | 25° 26′ 48″ E | 7xhN1 | 2xhN1 | 2xhA1 | hA1 | hA1 |
| N03 | Aghia, small fountain | 266 | 37° 11′ 07″ N | 25° 31′ 16″ E | hN2, 6xhN3 | – | 2xhA1 | hA1 | hA1 |
| Peloponnese | |||||||||
| P01 | Nisis Sfondili, small natural spring below the road, on stones and gravel | 87 | 36° 27′ 09″ N | 23° 07′ 07″ E | 2xhP4, hP5, 3xhP6 | 4xhP3 | 8xhA1 | hA1 | hA1 |
| P02 | Nisis Monemvasia, small fountain below the road | 70 | 36° 39′ 18″ N | 22° 59′ 43″ E | 6xhP2, hP3 | 1xhP1 | 7xhA1 | 2xhA1 | 2xhA1 |
| P07 | Agio Theodori, NE Taigethos Mts., small fountain | 238 | 36° 56′ 55″ N | 22° 10′ 00″ E | 8xhP1 | 2xhP2 | 9xhA1 | hA1 | hA1 |
| Rhodos | |||||||||
| R02 | E of Sálakos, a fountain filling up a small tank, on detritus, with Daphniola | 210 | 36° 17′ 04″ N | 28° 00′ 30″ E | hR1, 7xhR2, hR3 | 3xhR1 | 2xhA1 | 2xhR1 | 2xhA1 |
| R04 | 6 km SE of Sálakos, a fountain, on concrete and weeds below the pipes’ outlets | 349 | 36° 15′ 27″ N | 27° 56′ 49″ E | 11xhR2 | – | 2xhA1 | ||
| R06 | N of Epáno Kalamón, a small natural spring, on stones | 231 | 36° 20′ 18″ N | 28° 03′ 32″ E | 7xhR4, 2xhR5 | 5xhR2 | 2xhA1 | 2xhR1 | 2xhA1 |
| Tinos | |||||||||
| T01 | Kardiani, a fountain, numerous snails also over water | 378 | 37° 36′ 21″ N | 25° 04′ 35″ E | 5xhT1, hT2 | 3xhT1 | 2xhA1 | hA1 | hA1 |
| T02 | Komi, a fountain filling several sinks and basins made of stone, covered with a roof | 88 | 37° 36′ 20″ N | 25° 08′ 26″ E | 8xhT3 | 2xhT2 | 2xhA1 | ||
| References | |||||||||
| ATT | Pseudamnicola macrostoma—Kato Souli, Marathonis, a ditch | 38° 08′ 28″ N | 24° 00′ 19″ E | KF758783 | – | – | |||
| EVV | Pseudamnicola negropontina—Marmaris, Evvoia, a concrete cistern supplied with water by a spring | 30 | 38° 02′ 25″ N | 24° 19′ 36″ E | EF061915 | – | – | ||
| Outgroup | |||||||||
| OUT | Adrioinsulana conovula | AF367628 | EU573986 | AF367656 | |||||
Morphometric techniques
We used a NIKON DS-5 digital camera measurement system to measure seven shell morphometric parameters: shell height, body whorl breadth, aperture height, spire height, aperture breadth, apex angle and angle between body whorl suture and horizontal surface (Szarowska 2006; Falniowski et al. 2012). For this analysis, ten randomly chosen specimens out of one population representing each of all nine clades, formed by sequences, were obtained in this study. They were as follows (clade/population): A1/A01, A2/A06, C/K03, CH/CH03, KAR/KAR01, N/N03, R1/R06, R2/R02 and TN/T02. The penes were measured in six dimensions (see figure caption) for each clade as well. The linear measurements were then logarithmically (log10) transformed; for angular measurements, the arcsine transformation was applied. We calculated Euclidean distances and computed minimum spanning tree (MST) using NTSYSpc (Rohlf 1998). The same program was used to compute principal component analysis (PCA), based on the matrix of correlation (Falniowski 2003). The original observations were projected into PC space, with a superimposed minimum spanning tree (for clarity, not presented in the figures) to detect local distortions in the data.
DNA extraction, PCR amplification and sequencing
DNA was extracted from foot tissue and hydrated in Tris-EDTA (TE) buffer (3 × 10 min); then, total genomic DNA was extracted with the SHERLOCK extracting kit (A&A Biotechnology), and the final product was resuspended in 20 μl TE buffer. The extracted DNA was stored at −80 °C at the Department of Malacology of Institute of Zoology of the Jagiellonian University in Kraków.
The following primers were used in the study: two mitochondrial gene fragments: (i) COI (with primers: LCOI490 5′-GGTCAACAAATCATAAAGATATTGG-3′; Folmer et al. 1994 and COR722b 5′-TAAACTTCAGGGTGACCAAAAAATYA-3′; Wilke and Davis 2000) and (ii) 16S (primers: LRJ12887 5′-CCGGTCTGAACTCAGATCACGT-3′ and LRN13398 5′-CGCCTGTTTAACAAAAACAT-3′; Kasper et al. 2004); two nuclear gene fragments: (iii) 18S (primers: SWAM18SF1 5′-GAATGGCTCATTAAATCAGTCGAGGTTCCTTAGATGATCCAAATC-3′ and SWAM 18SR1 5′-ATCCTCGTTAAAGGGTTTAAAGTGTACTCATTCCAATTACGGAGC-3′; Attwood et al. 2003) and (iv) 28S (primers: 28Sna1 5′-GACCC GTCTTGAAACACGGA-3′ and 28Sna2 5′-AGCCAATCCT TATCCCGAAG-3′, Kano et al. 2002); and (v) histone 3 (primers: H3F 5′-ATGGCTCGTACCAAGCAGACVGC-3′ and H3R 5′-ATATCCTTRGGCATRATRGTGAC-3′; Colgan et al. 1998).
The PCR conditions were as follows: for COI: initial denaturation step of 4 min at 94 °C, followed by 35 cycles of 1 min at 94 °C, 1 min at 55 °C, 2 min at 72 °C, and a final extension of 4 min at 72 °C; for 16S: initial denaturation step of 2 min 30 s at 90 °C, followed by 10 cycles of 50 s at 92 °C, 50 s at 43 °C, and 40 s at 72 °C, and 36 cycles of 30 s at 92 °C, 40 s at 44.4 °C, 40 s at 72 °C; for 18S: initial denaturation step of 4 min at 94 °C, followed by 40 cycles of 45 s at 94 °C, 45 s at 51 °C, 2 min at 72 °C; for 28S: initial denaturation step of 2 min at 94 °C, followed by 35 cycles of 30 s at 94 °C, 30 s at 50 °C, 90 s at 72 °C; and for H3: initial denaturation step of 2 min at 94 °C, followed by 35 cycles of 30 s at 94 °C, 30 s at 50 °C, 1 min at 72 °C, and after all cycles were completed, an additional elongation step of 4 min at 72 °C. Sequencing methods are described in Szarowska et al. (2014a).
Molecular analyses
For phylogenetic analysis, for COI, 16S and 18S, we used sequences of other available Pseudamnicola species from Greece: P. macrostoma from Attica (Radea et al. 2013; only COI), P. negropontina from Evvoia Island (Szarowska et al. 2006; only COI) and P. exilis from the southern Peloponnese and Kythira Island (Szarowska and Falniowski 2011) (Table 1). Adrioinsulana conovula (Frauenfeld, 1863) (Wilke et al. 2001) sequences were used as the outgroup.
Sequences were initially aligned in the MUSCLE (Edgar 2004) program in MEGA 6 (Tamura et al. 2013) and then checked in Bioedit 7.1.3.0 (Hall 1999). Haplotypes were distinguished with DnaSP 5.10 (Librado and Rozas 2009). The saturation test by Xia et al. (2003) performed with DAMBE (Xia 2013) revealed no saturation in any of the sequences studied.
Best-fit models of nucleotide evolution were selected according to the corrected Akaike Information Criteria (AICc) in jModelTest v. 2.1.4 (Guindon and Gascuel 2003; Darriba et al. 2012). The maximum likelihood approach was used to construct a phylogenetic tree with PhyML 3.0 (Guindon and Gascuel 2003). The Bayesian analyses were run with MrBayes ver. 3.2.3 (Ronquist et al. 2012) with default priors. Two simultaneous analyses were performed, each lasting 40,000,000 generations with one cold chain and three heated chains, starting from random trees and sampling trees every 1000 generations. The first 25 % trees were discarded as burn-in. The analyses were summarised on 50 % majority-rule tree. To infer haplotype networks of the markers used, a median-joining calculation was implemented in NETWORK 4.6.1.1 (Bandelt et al. 1999).
To apply the molecular clock, the data from COI were used. Two hydrobiids, Peringia ulvae Pennant, 1777 and Salenthydrobia ferreri (Wilke 2003; AF478401, AF478410), were used as outgroups (tree not shown). The divergence time between these two species was used to calibrate the molecular clock, with correction according to Falniowski et al. (2008). The likelihoods for trees with and without the molecular clock assumption for a likelihood ratio test (LRT) (Nei and Kumar 2000) were calculated with PAUP. The relative rate test (RRT) (Tajima 1993) was performed in MEGA. As Tajima’s RRTs and the LRT test rejected the equal evolutionary rate throughout the tree for Pseudamnicola, time estimates were calculated using a non-parametric rate smoothing (NPRS) analysis with the recommended Powell algorithm, in r8s v.1.7 for Linux (Sanderson 1997, 2003).
Although the aim of our study was not to delimit and/or describe species in the studied Pseudamnicola populations, some provisional distinction between local populations and putative species was useful. Thus, to provisionally delimit species from sequence data, without the prior definition of taxon and/or population, usually defined geographically, we used a procedure introduced by Pons et al. (2006), known as the generalised mixed Yule coalescent (GMYC) procedure. It is ‘general’ because it has relaxed some rather biologically unrealistic assumptions of the GMYC model, using a relaxed ultrametric tree and a single threshold approach. The multiple threshold approach gave similar results, with a few more species. Surely, there is no certain technique to delimit species with molecular data (e.g. Sauer and Hausdorf 2012); thus, we used this technique to gain some estimate only. For confirmation, we performed also the Automatic Barcode Gap Discovery (ABGD) analysis (Puillandre et al. 2012) in ‘abgd web’ (http://wwwabi.snv.jussieu.fr/cgi-bin/abgdWeb.cgi) selecting the K2P genetic distance and 100 steps (the remaining parameters were set to default). The ABGD estimates a maximum limit for intraspecific genetic divergence. After, this limit is used to separate sequences belonging to the same species (with smaller divergences) from sequences belonging to different species (with higher divergence level).
Results
Molecular phylogeny, preliminary species delimitation and time of divergence
In all the analyses, the topologies of the resulting phylograms were identical in both the maximum likelihood (ML) and Bayesian inference. The 18S sequences (401 bp, GenBank Accession numbers KT710543 - KT710575 ), as well as 28S sequences (512 bp, GenBank Accession numbers KT710576 - KT710594 ), show no differences between the studied populations (Table 1) and only slight differences with A. conovula (p-distance = 0.012) in 18S. In the H3 sequences (283 bp, GenBank Accession numbers KT710736 - KT710755 ), two haplotypes (p-distance = 0.007) were found. One of them was characteristic of populations from Rhodos and Karpathos, and the second was found in all the other populations.
The maximum-likelihood phylogram (GTR+I+G, 10,000 bootstrap replicates) for the COI gene. The ML tree was rooted by using the Adrioinsulana conovula. Bootstrap support is shown only if above 70 %. Division into 16 clades (potential species) and connotations with earlier described Pseudamnicola species are also shown. Divergence times of main clades are also shown
The median-joining haplotype network of COI haplotypes. The colours indicate the specific clades, see Fig. 1
p-distances between main COI clades of Pseudamnicola. For details, see Fig. 1
| PN | TN | A1 | N | A2 | CH | PM | C | P2 | KIT4 | KIT3 | R1 | KAR | R2 | P7 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TN | 0.021 | ||||||||||||||
| A1 | 0.035 | 0.023 | |||||||||||||
| N | 0.038 | 0.030 | 0.024 | ||||||||||||
| A2 | 0.037 | 0.025 | 0.026 | 0.030 | |||||||||||
| CH | 0.036 | 0.032 | 0.029 | 0.030 | 0.018 | ||||||||||
| PM | 0.056 | 0.043 | 0.043 | 0.047 | 0.029 | 0.033 | |||||||||
| C | 0.055 | 0.046 | 0.039 | 0.045 | 0.033 | 0.028 | 0.041 | ||||||||
| P2 | 0.062 | 0.052 | 0.051 | 0.061 | 0.047 | 0.042 | 0.054 | 0.050 | |||||||
| KIT4 | 0.044 | 0.032 | 0.035 | 0.043 | 0.032 | 0.032 | 0.037 | 0.041 | 0.046 | ||||||
| KIT3 | 0.055 | 0.043 | 0.044 | 0.050 | 0.035 | 0.034 | 0.048 | 0.040 | 0.049 | 0.020 | |||||
| R1 | 0.074 | 0.062 | 0.058 | 0.060 | 0.053 | 0.050 | 0.057 | 0.059 | 0.070 | 0.047 | 0.055 | ||||
| KAR | 0.081 | 0.072 | 0.068 | 0.063 | 0.062 | 0.056 | 0.068 | 0.062 | 0.080 | 0.064 | 0.069 | 0.036 | |||
| R2 | 0.078 | 0.065 | 0.064 | 0.061 | 0.059 | 0.057 | 0.066 | 0.066 | 0.072 | 0.053 | 0.063 | 0.032 | 0.039 | ||
| P7 | 0.075 | 0.065 | 0.064 | 0.059 | 0.052 | 0.049 | 0.052 | 0.054 | 0.064 | 0.050 | 0.050 | 0.057 | 0.071 | 0.059 | |
| P1 | 0.066 | 0.052 | 0.050 | 0.050 | 0.038 | 0.035 | 0.045 | 0.041 | 0.047 | 0.037 | 0.034 | 0.042 | 0.064 | 0.053 | 0.037 |
The maximum-likelihood phylogram for the COI+16S rRNA+18S gene. The ML tree was rooted by using the Adrioinsulana conovula. Bootstrap support (>75 %) and Bayesian posterior probabilities (>0.95) were shown. Division into 16 clades (potential species) and connotations with earlier described Pseudamnicola species are also shown
The two sequences formed divergent clades: PN and PM for P. negropontina and P. macrostoma, respectively (Fig. 1). Closest to PN is the TN clade, which consists of all the haplotypes from Tinos and one haplotype from Naxos. Two other haplotypes from Naxos form one separate clade, N. Haplotypes from Andros form two distinguished clades: A1 and A2. All haplotypes from Khios are grouped into one clade, CH, and the same applies to the case of Crete (clade C). The sequences from the Peloponnese form three distinct clades, whose names correspond to sample sites (Szarowska and Falniowski 2011): the most divergent are P1 (from the southernmost population) and P7 (from the western population). The third Peloponnese clade (P2) is closest to the Cretan clade (C). On Kythira, two separate clades (KIT4 and KIT3) were identified, representatives of each inhabiting one of the two studied populations. Kythira populations showed the highest divergence of all the islands studied. Similar to the 16S analysis, the haplotypes from Rhodes and Karpathos formed a distinct cluster, consisting of three clades. One of these (KAR) contains haplotypes from Karpathos and is close to one of two Rhodes clades (R2), which consists of sequences from the two southernmost Rhodes populations. The other Rhodes clade (R1) is more divergent from the northern population, both according to the COI and concatenated trees.
The results of the COI dating analysis are presented in Fig. 1. All of the populations from the northern and central Aegean area split less than 2 Mya. The two oldest clades, P1 and P7, emerged on the Peloponnese (4.52 and 3.27 Mya, respectively). The Rhodes and Karpathos eastern cluster separated 2.93 Mya. The Cretan clade separated 2.09 Mya, while the divergence time of the remaining western populations from the Peloponnese and Kythira was 2.4–2.55 Mya.
Morphological differentiation
Parameters used in shell biometry (PCA) of Pseudamnicola
| Clades | a | b | c | d | e | α | β |
|---|---|---|---|---|---|---|---|
| A1—Andros | |||||||
| M | 2.22 | 1.53 | 1.20 | 0.35 | 1.07 | 146.3 | 6.90 |
| SD | 0.18 | 0.08 | 0.10 | 0.07 | 0.06 | 4.19 | 1.73 |
| Max | 2.64 | 1.64 | 1.42 | 0.52 | 1.21 | 151 | 9 |
| Min | 1.97 | 1.35 | 1.09 | 0.28 | 0.97 | 137 | 4 |
| A2—Andros | |||||||
| M | 3.08 | 1.96 | 1.62 | 0.57 | 1.42 | 141.2 | 7.10 |
| SD | 0.34 | 0.13 | 0.15 | 0.11 | 0.15 | 12.75 | 1.60 |
| Max | 3.69 | 2.15 | 1.93 | 0.77 | 1.73 | 170 | 10 |
| Min | 2.69 | 1.81 | 1.42 | 0.41 | 1.22 | 126 | 5 |
| C—Crete | |||||||
| M | 3.20 | 2.05 | 1.71 | 0.60 | 1.44 | 133.3 | 8.30 |
| SD | 0.59 | 0.30 | 0.23 | 0.17 | 0.21 | 10.07 | 1.77 |
| Max | 4.63 | 2.73 | 2.29 | 0.96 | 1.89 | 148 | 11 |
| Min | 2.69 | 1.82 | 1.50 | 0.35 | 1.24 | 112 | 5 |
| CH—Khios | |||||||
| M | 2.78 | 1.82 | 1.69 | 0.40 | 1.43 | 145.9 | 6.10 |
| SD | 0.27 | 0.07 | 0.12 | 0.10 | 0.12 | 11.49 | 1.60 |
| Max | 3.40 | 1.91 | 1.94 | 0.63 | 1.69 | 155 | 9 |
| Min | 2.48 | 1.67 | 1.50 | 0.28 | 1.24 | 121 | 4 |
| KAR—Carpathos | |||||||
| M | 2.14 | 1.40 | 1.24 | 0.27 | 1.04 | 138.1 | 5.00 |
| SD | 0.25 | 0.08 | 0.06 | 0.04 | 0.05 | 11.71 | 2.98 |
| Max | 2.80 | 1.51 | 1.36 | 0.36 | 1.11 | 151 | 8 |
| Min | 1.90 | 1.28 | 1.15 | 0.24 | 0.96 | 119 | 1 |
| N—Naxos | |||||||
| M | 2.64 | 1.67 | 1.43 | 0.55 | 1.21 | 133.9 | 6.70 |
| SD | 0.16 | 0.12 | 0.11 | 0.07 | 0.07 | 7.69 | 1.89 |
| Max | 2.92 | 1.85 | 1.60 | 0.63 | 1.29 | 149 | 9 |
| Min | 2.31 | 1.43 | 1.27 | 0.42 | 1.09 | 123 | 3 |
| R1—Rhodes | |||||||
| M | 1.82 | 1.29 | 1.08 | 0.22 | 0.92 | 148.4 | 3.50 |
| SD | 0.12 | 0.07 | 0.07 | 0.04 | 0.05 | 10.22 | 1.51 |
| Max | 1.98 | 1.36 | 1.19 | 0.28 | 1.00 | 155 | 6 |
| Min | 1.64 | 1.18 | 0.95 | 0.16 | 0.85 | 120 | 2 |
| R2—Rhodes | |||||||
| M | 2.95 | 1.74 | 1.68 | 0.47 | 1.41 | 143.5 | 6.20 |
| SD | 0.27 | 0.29 | 0.17 | 0.13 | 0.13 | 9.25 | 2.20 |
| Max | 3.50 | 2.10 | 1.89 | 0.82 | 1.58 | 153 | 10 |
| Min | 2.50 | 1.00 | 1.42 | 0.35 | 1.20 | 124 | 4 |
| TN—Tinos/Naxos | |||||||
| M | 2.67 | 1.75 | 1.51 | 0.38 | 1.34 | 146.0 | 6.90 |
| SD | 0.19 | 0.08 | 0.12 | 0.05 | 0.08 | 10.83 | 2.02 |
| Max | 3.04 | 1.87 | 1.68 | 0.49 | 1.51 | 157 | 10 |
| Min | 2.38 | 1.63 | 1.36 | 0.28 | 1.26 | 119 | 4 |
Shells of Pseudamnicola from Andros (A–R) and Evvoia (S–T: P. negropontina): A–E A01, F–I A03, J–L A04, M–P A06 and Q–R A08; bar equals 1 mm
Shells of Pseudamnicola from Tinos (A–F), Naxos (G–M) and Khios (N–U: P. chia): A–C T01, D–F T02, G–I N01, J–M N03, N–Q CH02 and R–U CH03; bar equals 1 mm
Shells of Pseudamnicola from Crete (A–D: P. brachia), Karpathos (E–G: P. pieperi) and Rhodes (H–U): A–D K03, E–G KAR01, H–M R02, N–Q R04 and R–U R06; bar equals 1 mm
Shell biometry (PCA) of Pseudamnicola for nine main clades, see COI phylogenetic tree. Measurements of shell were shown: a shell height, b body whorl breadth, c aperture height, d spire height, e aperture breadth, α apex angle and β angle between body whorl suture and horizontal surface. PC1 explains 58.73 % and PC2 explains 18.52 %, PC1 and PC2 cumulatively 77.25 % of the total variance for the Andros/Tinos/Khios/Naxos clades (above) and PC1 75.72 % and PC2 12.12 % cumulatively 87.84 % for the Rhodes/Karpathos/Crete clades (below)
Renal and pallial section of the female reproductive organs of Pseudamnicola chia from Khios Island, locality CH02: bc bursa copulatrix, cbc duct of bursa copulatrix, dgp gono-pericardial duct, ga albuminoid gland, gn nidamental gland, gp gonoporus, ov pallial oviduc, ovl loop of (renal) oviduct, rs receptaculum seminis, vc ventral canal
Penes of Pseudamnicola: A–D Andros, E Naxos, F–G Tinos, H–K Khios (P. chia), L–O Crete (P. brachia), P–S Karpathos (P. pieperi) and T–Z Rhodes (T–W R02, X–Z R06); bar represents 0.5 mm
Penes biometry (PCA) of Pseudamnicola for main clades. PC1 explains 58.73 %, PC2 explains 18.52 %, cumulatively 77.25 %
Discussion
The present research characterised 17 newly studied populations of Pseudamnicola from seven Aegean Islands and compared them with available data from five populations from the Peloponnese and Kythira Island and with two populations from Attica and Evvoia Island. This comparison allowed the detailed pattern of phylogeny of the Pseudamnicola in the Aegean area to be revealed.
Molecular phylogeny and putative species delimitation
The freshwater truncatelloideans in the Balkans appeared in the Palaeogene period, if not earlier (Kabat and Hershler 1993). Therefore, they are suitable for the evaluation of old (pre-Pleistocene) biogeographic relationships. Many of the present-day representatives of the freshwater Rissooidea are considered relicts, the distributions of which trace the Neogene drainage patterns fragmented by subsequent changes in climate and landscape (Hershler and Liu 2004). This hypothesis involves two conditions: (i) the springs inhabited by those obligatorily aquatic animals are stable habitats; and (ii) the gene flow among them, if at all present, is very low. In the abundant literature on the phylogeny and population genetic structure and gene flow of spring fauna, gastropods are well represented (e.g. Colgan and Ponder 1994; Ponder et al. 1995; Falniowski et al. 1998, 1999, 2009; Bohonak 1999; Hershler and Liu 2004; Brändle et al. 2005; Hershler et al. 2005; Falniowski and Szarowska 2011). Most studies indicate low levels of gene flow and high levels of endemism in spring snails (e.g. Colgan and Ponder 1994; Ponder et al. 1995; Finston and Johnson 2004), but other studies showed that some species were rather widespread, with high levels of gene flow among their populations (Falniowski et al. 1998, 1999; Hershler et al. 2005).
Phylogenetic analysis of Pseudamnicola indicates three main conclusions: (i) the studied populations of Pseudamnicola form 16 clades, according to the GMYC and ABGD results probably of species rank; (ii) intrapopulation differentiation level is generally low, slightly larger in populations occupying the mainland and islands close to the continent; and (iii) divergence times for most clades are less than 3 Mya. The short time of divergence, inferred from the low mitochondrial differentiation, suggesting thus close relationships between the studied Pseudamnicola populations, is confirmed by the low or no differentiation in the three studied nuclear loci.
According to the phylogenetic analysis and p-distance values for COI, the studied Pseudamnicola populations can be assigned to 16 clades, most of which are probably distinct species, according to the GMYC and ABGD analysis. The GMYC procedure has been applied in several previous studies (Barraclough et al. 2009; Papadopoulou et al. 2009a, b; Adolfsson et al. 2010; Pagès et al. 2010; Powell et al. 2011; Vuataz et al. 2011), including some on molluscs (Nekola et al. 2009; Lorion et al. 2010; Falniowski and Szarowska 2012; Jörger et al. 2012; Jörger and Schrödl 2013). Reliability of species delimitated by GMYC has also been discussed in the literature (e.g. Lohse 2009; Papadopoulou et al. 2009b; Jörger et al. 2012; Jörger and Schrödl 2013; Sauer and Hausdorf 2012), also with substantial criticism, and the method was further developed (Monaghan et al. 2009). However, in our work, the GMYC results were confirmed by ABGD analysis. Surely, with one short DNA fragment, species level distinction is always ambiguous; thus, we treat those clades as presumed species only, not attempting to distinguish and describe them formally—the latter should wait for more data available.
According to morphological criteria, six species of Pseudamnicola were distinguished in Greece (Schütt 1980; Szarowska et al. 2006). P. brachia was described from Crete (corresponding with clade C), P. chia from Khios (clade CH) and P. negropontina from Evvoia Island and may probably inhabit continental Greece as well (clade PN). P. pieperi is known from Karpathos (clade KAR). According to our results, P. pieperi may occur also on Rhodes Island; however, clades belonging to this cluster are more divergent, which rather suggests the existence of three rather than one species on these two islands. Recently, two molecularly distinct species from Rhodos were described (Radea et al. 2015). Similarly, P. negropontina may occupy the islands of Tinos, Naxos and probably Andros, but GMYC results indicate that there are four species in this area, with one case of sympatry (at locality A03). Two Pseudamnicola species come from the continent (Schütt 1980). P. macrostoma inhabits the northern Peloponnese and continental Greece. Unfortunately, we do not have well-fixed specimens of Pseudamnicola from this region, apart from the reference sequence (Radea et al. 2013). The second species, according to Schütt (1980), within the range of P. exilis (drawn of the map but not described and far from the type locality—see above) has been studied in the southern part of the Peloponnese and Kythira Island (Szarowska and Falniowski 2011). However, this presumed ‘P. exilis’ represented at least four distinct species, including one from Kythira Island, which was highly polymorphic (Fig. 29 in Szarowska and Falniowski 2011).
Morphological differentiation
Differences were noted in the shell habitus (height/width ratio, spire height, shell size) between the two presumed species of Pseudamnicola from the Peloponnese (population P01 vs P02 and P07) and two from the two localities in Kythira Island (Szarowska and Falniowski 2011: Figs. 2–14). No differences—apart from size—were found in the morphology of the penis and female reproductive organs between those populations (Szarowska and Falniowski 2011: Figs. 15–25 and 26); the lack of taxonomically useful characters and variable degrees of fixation-caused contraction may be an explanation for this.
On Andros Island, where there were three presumed species, shells were slightly variable and intrapopulation variability was sometimes higher than interpopulation variability. At locality A03, inhabited sympatrically by two presumed species, shell variation did not coincide with genotypic differences. Only the shells from localities A05 (not presented) and A06 were distinguishable, with their high penultimate whorls, from those of the other populations/species. However, PCA showed distinctness of the two Andros clades. The difference between the shells from the Naxos populations, N01 and N03, representing two presumed species, is clearly visible although it only concerns their size, and this is also reflected by their distinctness in PCA, mostly along the PC1 axis (TN versus N). Indeed, the shells from locality N03 do not differ from the ones from the two Tinos localities, representing the same presumed species. The shells of P. chia in PCA show distinctness from clade A1, but are more or less mixed with the shells of the other Pseudamnicola from the studied area.
In addition, there were no apparent differences distinguishing the shells of P. brachia (clade C) and P. pieperi (clade KAR), although PCA grouped them separately. On Rhodes Island, shells from localities R02 and R04 were characterised by their expanded apertures and differed in size and proportion from the shells in locality R06, representing another presumed species. PCA confirmed the distinctness of R01 and R02.
In the literature, the Greek Pseudamnicola species are distinguished through the application of only two criteria: shell morphology and geographic distribution (Schütt 1980). Our results certainly do not confirm those criteria. Morphometry shows some differences in the shell morphology of the particular taxa, but those differences concern no qualitative characters routinely used in species descriptions, like shape, general habitus, etc.
A similar lack of differences between the species in the characters of the female reproductive organs in Pseudamnicola was found by Szarowska and Falniowski (2011). Furthermore, the penes of the four presumed species from the islands of Andros, Tinos and Naxos are indistinguishable, as are those from the Peloponnese and Kythira Island (Szarowska and Falniowski 2011). In contrast, the penes of P. chia and P. brachia, although characteristic, cannot be used to distinguish these two species. Similar penes could also be found in the Pseudamnicola inhabiting Rhodes Island. Thus, in general, it is difficult to use penis characters to distinguish species within the Greek Pseudamnicola.
Female reproductive organ characteristics, such as receptacula, bursae copulatrix, etc., as well as penis morphology, have been found to be useful characteristics to infer phylogeny at higher levels, at least at the genus level, but certainly not at the species level (Szarowska 2006; Szarowska and Falniowski 2008). Pseudamnicola seems to be a further example of morphostatic radiation, as defined by Davis (1992), which is so common in truncatelloid snails (Wilke and Davis 2000; Wilke and Falniowski 2001; Falniowski and Szarowska 2011; Falniowski et al. 2012).
History of Pseudamnicola at the Aegean Islands
In fact, high genotypic diversity was noted on the islands of Kythira and Rhodes—two islands close to the mainland. Similarly high or even higher differences were noted between the Peloponnese populations. This may suggest that the continent offers conditions conducive to the longevity of metapopulations and may serve as a source of migrants, transported passively, most probably by birds. Two presumed species on Rhodes Island, which that are situated a few kilometres from each other, differ more from one another than each of them does from P. pieperi from the distant Karpathos Island. The relatively low genetic distances between the Cretan P. brachia and the other species despite the long distance and time of isolation of Crete are also notable. In contrast, relatively high diversity in the Andros/Tinos/Naxos complex is similar to that noted for plants by Kougioumoutzis et al. (2014). Another striking pattern is shown by the relatively close relationships between this group of islands and Khios, which could be explained by a nearly complete land bridge in the Late Pleistocene. The estimated times of divergence of Bythinella in continental Greece (Falniowski and Szarowska 2011) unexpectedly suggest that this genus has a rather short history in the studied area. We have found the same to be true in our study of Pseudamnicola.
According to geologic and climatic events, some key dates can be highlighted: the initiation of the mid-Aegean Trench split (around 12 Mya), its ending (around 9 Mya) and the Messinian crisis (around 5 Mya). The modern post-Alpine European topography in the Mediterranean emerged in the Late Tortonian (8 Mya) (Kostopoulos 2009). In the Upper Miocene (around 6 Mya), the Peloponnese and Evvoia were part of a continuous land mass with the continent (Popov et al. 2004). In the Middle-Late Pliocene (3.5–1.8 Mya), Evvoia was still a part of the continent, but the Peloponnese became separated from the continent by a broad strait (Creutzburg 1963; Dermitzakis and Papanikolaou 1981; Dermitzakis 1990; Popov et al. 2004). During the glacial maxima, the sea level was as much as 200 m lower than today (Beerli et al. 1996). During the glacial maxima in the Pleistocene, on the Greek island Andikythira (16 kya, and thus during the last glacial maximum: LGM) temperatures were some 5–8 °C below present levels, and climatic conditions were slightly drier (Digerfeldt et al. 2000; Gittenberger and Goodfriend 2006). For Bythinella from continental Greece, the estimated time of divergence did not exceed 4 Mya (Falniowski and Szarowska 2011). Schilthuizen et al. (2004) estimated a similarly short time for the Cretan Albinaria, at 3.5 Mya. In the Pliocene, some land connections disappeared due to a rise in sea level (Dermitzakis and Papanikolaou 1981; Dermitzakis 1990), but the present Peloponnese was isolated from the mainland, which coincides, in our study, with the dating of the divergence time between two of the three Peloponnese Pseudamnicola populations and the third one.
The Aegean Islands are divided into the following five groups: those associated with (i) Asia Minor (Khios and Rhodes in our study); (ii) the eastern shelf of Greece (Evvoia in our study); (iii) the Crete/Karpathos complex; (iv) the Cyclades that form a central, independent shelf (Andros, Tinos and Naxos in our study); and (v) Kythira. The central group (Cyclades) has been separated from Europe since the Middle Pleistocene (Foufopoulos and Ives 1999). Since the peak of the Wisconsin-Würm glaciation (24–10 kya), global sea level has risen 120–130 m and, in the present Aegean Islands, replaced dry land. Between 350 and 250 kya, the sea area was restricted again, and almost 50–60 % of the present Aegean Sea was land with extensive drainage systems and large lakes (Lykousis 2009). In the Late Pleistocene, the eastern Aegean Islands were connected with Anatolia, and the strait between Europe and the Cyclade-mega-island, connecting current-day Naxos, Paros, Tinos and Andros, was rather narrow (Kougioumoutzis et al. 2014). The present geography of the Aegean is no more than 8–6 kya old (Kougioumoutzis et al. 2014).
Levels of gene flow, as well as metapopulation structure in general, depend on several species-specific traits (Bohonak 1999; Bilton et al. 2001; Myers et al. 2001). The model of allopatric fragmentation and/or vicariant speciation in the Aegean Pseudamnicola does not agree with the mtCOI sequence divergence data, suggesting the relatively recent origin of the observed differentiation, which is attributable to geologic events only in some cases (see above). In the same manner, vicariance cannot explain the whole pattern in the land snail Albinaria (Douris et al. 1998, 2007) and other invertebrates and vertebrates in the Aegean (Dennis et al. 2000; Kasapidis et al. 2005). Just as in the central European Bythinella (Falniowski 1987; Falniowski et al. 1998, 1999; Szarowska 2000) and the Greek mainland Bythinella (Falniowski and Szarowska 2011), the present data did not confirm either the complete isolation of the Aegean Pseudamnicola island populations or their stability and longevity, thus confirming the second model in which a relatively young fauna is composed of more or less widely distributed taxa, with relatively high levels of gene flow among the springs they inhabit. For inhabitants of such miniature and changeable habitats, survival must depend on dynamic processes of colonisation and recolonisation events coupled with short- or (in some cases) long-distance dispersal. Pseudamnicola is not a typical oligostenothermic inhabitant of springs as it can also be found in streams, and it is somewhat amphibiotic as it can be found crawling and feeding above the water (personal observations), thus seeming capable of passive transportation by birds (for review of the literature on bird transportation, see Falniowski and Szarowska 2011).
Notes
Acknowledgments
This study received funding from the National Science Centre [2011/01/B/NZ8/00041] as a grant awarded to Andrzej Falniowski. We wish to thank Dr Tim Barraclough from the Imperial College London, for providing the R scripts used for performing the GMYC analysis, and Dr Helen McCombie-Boundry from Brest University for improving the language of the paper.
Conflict of interest
The authors declare that they have no competing interests. The authors alone are responsible for the content and writing of the paper.
Supplementary material
References
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