A dichotomous PCR–RFLP identification key for the freshwater mussels (Bivalvia: Unionida) of Peninsular Malaysia
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Accurate species identification is the basis for successful species conservation and research, but extensive phenotypic plasticity in freshwater mussel (Bivalvia: Unionida) species often leads to misidentification by morphology alone. Molecular techniques have proven a powerful alternative tool for identification of freshwater mussels in North America and Europe. Unfortunately, no such tools are currently available for tropical mussels, which are subject to particularly severe habitat alteration and destruction. We developed a PCR–RFLP key for the freshwater mussel fauna of Peninsular Malaysia, comprising nine native and one non-native species from seven genera and three unionid subfamilies (Gonideinae, Rectidentinae and Anodontinae). The key enables identification of each species in two to four single digestion steps using six restriction endonucleases. All species can be identified using a single PCR fragment of 374 bp length (Histone H3) with the exception of two Pseudodon species, which can be differentiated through amplification and subsequent digestion of a 709 bp CO1 gene fragment. Reliability of the key was tested with specimens from 46 populations sampled from 13 different river basins of Peninsular Malaysia.
KeywordsCOI Histone H3 Glochidia Molecular identification Molluscs Unionidae
This project was funded by the Ministry of Higher Education Research Grant FRGS/1/2015/WAB13/UNIM//1. We thank SNA Musa, SNK Che Samsuddin and SN Muhamad Nor for laboratory-work assistance.
- Gustafson RG, Iwamoto EM (2005) A DNA-based identification key to pacific northwest freshwater mussel glochidia: importance to salmonid and mussel conservation. Northwest Sci 79:233–245Google Scholar
- IUCN (2016) IUCN red list of threatened species. Version 2016-2. http://www.iucnredlist.org
- Stoeckle BC, Kuehn R, Geist J (2016) Environmental DNA as a monitoring tool for the endangered freshwater pearl mussel (Margaritifera margaritifera L.): a substitute for classical monitoring approaches? Aquat Conserv Mar Freshw Ecosyst 26:1120–1129. https://doi.org/10.1002/aqc.2611 CrossRefGoogle Scholar
- Vannarattanarat S, Zieritz A, Kanchanaketu T et al (2014) Molecular identification of the economically important freshwater mussels (Mollusca-Bivalvia-Unionoida) of Thailand: developing species-specific markers from AFLPs. Anim Genet 45:235–239. https://doi.org/10.1111/age.12115 CrossRefPubMedGoogle Scholar
- White LR, McPheron BA, Stauffer JR (1996) Molecular genetic identification tools for the unionids of French Creek, Pennsylvania. Malacologia 38:181–202Google Scholar
- Zieritz A, Lopes-Lima M (2018) Handbook and National Red-List of the Freshwater Mussels of Malaysia. IUCNGoogle Scholar