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Conservation Genetics Resources

, Volume 11, Issue 3, pp 325–328 | Cite as

Characterization of the complete chloroplast genome of Juniperus microsperma (Cupressaceae), a rare endemic from the Qinghai-Tibet Plateau

  • Sonam Tso
  • Jialiang Li
  • Siyu Xie
  • Jibin Miao
  • Quanjun Hu
  • Kangshan MaoEmail author
Technical Note

Abstract

The complete chloroplast genome of Juniperus microsperma, a rare endemic conifer from the Qinghai-Tibet Plateau whose current status satisfies the IUCN Red List criteria of endangered species, was determined in this study. The genome size is 127,409 bp in length. The genome contained 119 genes, including 82 protein-coding genes, four ribosomal RNA genes and 33 transfer RNA genes. The most of genes occur as a single copy, while two genes occur in double copies (trnL-CAU and trnQ-UUG). In these genes, eight genes (atpF, ndhA, ndhB, rpoC1, petD, petB, rpl16 and rpl2) have a single intron, while two genes (rps12 and ycf3) harbor two introns. There are no inverted repeat sequences in this genome. The GC content of this cp genome is 35.0%. Phylogenomic analysis revealed a close relationship among J. microsperma, J. virginiana, J. scopulorum and J. bermudiana.

Keywords

Chloroplast genome Juniperus microsperma Conifer Qinghai-Tibet Plateau Rare endemic 

Notes

Acknowledgements

This work was supported by the National Natural Science Foundation of China (Grants 31622015, 31590821, 31370261), Science & Technology Basic Resources Investigation Program of China (Grant 2017FY100100), Sichuan Provincial Department of Science and Technology (Grant 2015JQ0018), Natural Science Foundation of the Tibet Autonomous Region (Grant XZ2017ZRG-04).

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Copyright information

© Springer Science+Business Media B.V., part of Springer Nature 2018

Authors and Affiliations

  1. 1.College of ScienceTibet UniversityLhasaPeople’s Republic of China
  2. 2.Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life SciencesSichuan UniversityChengduPeople’s Republic of China

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