Complete mitochondrial genome sequence of the tiny dragonfly, Nannophya pygmaea (Odonata: Libellulidae)
- 40 Downloads
Abstract
The tiny dragonfly, Nannophya pygmaea (Odonata: Libellulidae), has been listed as an endangered insect in South Korea. We sequenced the complete 15,112-bp-long mitochondrial genome (mitogenome) of the species. The genome included a typical set of genes (13 protein-coding genes [PCGs], two rRNA genes, and 22 tRNA genes) and one non-coding region with an arrangement identical to that found in most insects. Among the 13 PCGs, only ND1 started with the atypical TTG. The 441-bp-long A+T-rich region possessed the highest A/T content (84.6%) in the genome. N. pygmaea was placed as the sister to Orthetrum species belonging to Libellulidae. Unlike conventional phylogenetic results, the suborders Anisozygoptera and Zygoptera formed a strong sister group in both Bayesian inference (BI) and maximum likelihood (ML) methods (BI, BPP = 1 and ML, 88–94%), justifying the use of different types of molecular markers for phylogenetic analysis.
Keywords
Mitochondrial genome Odonata Nannophya pygmaea Endangered species PhylogenyNotes
Acknowledgements
This study was supported by a grant from the National Institute of Biological Resources (NIBR), funded by the Ministry of Environment (MOE) of the Republic of Korea (NIBR201603103).
References
- Cameron SL (2014) Insect mitochondrial genomics: implications for evolution and phylogeny. Annu Rev Entomol 59:95–117CrossRefPubMedGoogle Scholar
- Davis RB, Nicholson DB, Saunders ELR, Mayhew PJ (2011) Fossil gaps inferred from phylogenies alter the apparent nature of diversification in dragonflies and their relatives. BMC Evol Biol 11:252CrossRefPubMedPubMedCentralGoogle Scholar
- Ishida S, Ishida K, Kozinia K, Sukimura M (1988) Illustrated guide for identification of the Japanese Odonata. Tokai Univ Press, TokyoGoogle Scholar
- Kim MJ, Jung KS, Park NS, Wan X, Kim K-G, Jun J, Yoon TJ, Bae YJ, Lee SM, Kim I (2014) Molecular phylogeny of the higher taxa of Odonata (Insecta) inferred from COI, 16S rRNA, 28S rRNA, and EF1-α sequences. Entomol Res 44:65–79CrossRefGoogle Scholar
- Lee EM, Hong MY, Kim MI, Kim MJ, Park HC, Kim KY, Lee IH, Bae CH, Jin BR, Kim I (2009) The complete mitogenome sequences of the palaeopteran insects Ephemera orientalis (Ephemeroptera: Ephemeridae) and Davidius lunatus (Odonata: Gomphidae). Genome 52:810–817CrossRefPubMedGoogle Scholar
- Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans, pp 1–8. doi: 10.1109/GCE.2010.5676129
- Park JS, Kim MJ, Jeong SY, Kim SS, Kim I (2016) Complete mitochondrial genomes of two gelechioids, Mesophleps albilinella and Dichomeris ustalella (Lepidoptera: Gelechiidae), with a description of gene rearrangement in Lepidoptera. Curr Genet 62:809–826CrossRefPubMedGoogle Scholar
- Rehn AC (2003) Phylogenetic analysis of higher-level relationships of Odonata. Syst Entomol 28:181–239CrossRefGoogle Scholar
- Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61:539–542CrossRefPubMedPubMedCentralGoogle Scholar
- Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312–1313CrossRefPubMedPubMedCentralGoogle Scholar
- Wang J-F, Chen M-Y, Chaw S-M, Morii Y, Yoshimura M, Sota T, Lin C-P (2015) Complete mitochondrial genome of an enigmatic dragonfly, Epiophlebia superstes (Odonata, Epiophlebiidae). Mitochondr DNA 26:718–719CrossRefGoogle Scholar
- Won BH, Kim SS, Kim W, Kim IS, Kim JH, Kim JI, Nam SH, Noh BJ, Moon TY, Baek NK et al (2009) Endangered wild species in Korea. Kyo-Hak Publishing Co, SeoulGoogle Scholar
- Yong H-S, Song S-L, Suana IW, Eamsobhana P, Lim P-E (2016) Complete mitochondrial genome of Orthetrum dragonflies and molecular phylogeny of Odonata. Biochem Syst Ecol 69:124–131CrossRefGoogle Scholar
- Yoon J, Nam JM, Kim H, Bae YJ, Kim JG (2010) Nannophya pygmaea (Odonata: Libellulidae), an endangered dragonfly in Korea, prefers abandoned paddy fields in the early seral stage. Environ Entomol 39:278–285CrossRefPubMedGoogle Scholar
- Yu P, Cheng X, Ma Y, Yu D, Zhang J (2016) The complete mitochondrial genome of Brachythemis contaminata (Odonata: Libellulidae). Mitochondrial DNA A 27:2272–2273Google Scholar