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Characterization of the complete mitochondrial genome for the Euphractus sexcinctus flavimanus (Mammalia, Xenarthra) subspecies

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Abstract

We are reporting the complete mitochondrial genome for the Euphractus sexcinctus flavimanus, a subspecies from South America, who is also known as yellow armadillo and six-banded armadillo. The de novo short read assembly was obtained from a west-central Brazil specimen. A typical mammalian mitogenome, containing 37 genes and one non-coding region (D-loop) was found. The total length was 16,805 base pairs and differences were observed among the E. s. flavimanus mitogenome described here and that previously reported for an E. sexcinctus unknown subspecies. Such difference was mainly due to the variation in the non-coding region. The complete mitochondrial genome described for the E. s. flavimanus is an important data source for comparative approaches, including genetic diversity studies among armadillo species and subspecies.

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References

  • Aljanabi SM, Martinez I (1997) Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res 25:4692–4693

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Arnason U, Gullberg A, Janke A (1997) Phylogenetic analyses of mitochondrial DNA suggest a sister group relationship between Xenarthra (Edentata) and ferungulates. Mol Biol Evol 14:762–768

    Article  CAS  PubMed  Google Scholar 

  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF (2013) MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol 69:313–319

    Article  PubMed  Google Scholar 

  • Cabrera A (1958) Catálago de los mamíferos de America del Sur. Rev Mus Cienc Nat Bernardino Rivadavia 4:1–307

    Google Scholar 

  • De Andrade FAG, Fernandes MEB, Barros MC, Schneider H (2006) A range extension for the yellow armadillo, Euphractus sexcinctus Linnaeus, 1758 (Xenarthra: Dasypodidae), in the eastern Brazilian Amazon. Edentata 7:25–30

    Article  Google Scholar 

  • Gardner AL (2007) Magnorder Xenarthra. In: Gardner AL (ed) Mammals of South America. The University of Chicago Press, Chicago, pp 127–176

    Google Scholar 

  • Gibb GC, Condamine FL, Kuch M, Enk J, Moraes-Barros N, Superina M, Poinar HN, Delsuc F (2015) Shotgun mitogenomics provides a reference phylogenetic framework and timescale for living xenarthrans. Mol Biol Evol. doi:10.1093/molbev/msv250

    PubMed  PubMed Central  Google Scholar 

  • Hall TA (2013) BioEdit v 7.2. 3. Biological sequence alignment editor for Win 95/98/NT/2K/XP7

  • Hass A, Rodrigues FHG, de Oliveira TG (2003) The yellow armadillo, Euphractus sexcinctus, in the north/northeastern Brazilian coast. Edentata 5:46–47

    Google Scholar 

  • Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:0955–0964

    Article  CAS  Google Scholar 

  • Redford KH, Wetzel RM (1985) Euphractus sexcinctus. Mamm Species 252:1–4

    Article  Google Scholar 

  • Silva Júnior JDS, Nunes AP (2001) The disjunct geographical distribution of the yellow armadillo, Euphractus sexcinctus (Xenarthra, Dasypodidae). Edentata 4:16–18

    Google Scholar 

  • Silva Júnior JDS, Fernandes MEB, Cerqueira R (2001) New records of the yellow armadillo (Euphractus sexcinctus) in the state of Maranhão, Brazil (Xenarthra, Dasypodidae). Edentata 4:18–23

    Google Scholar 

  • Wetzel RM (1985) Taxonomy and distribution of armadillos, Dasypodidae. In: Montgomery GG (ed) The evolution and ecology of armadillos, sloths and vermilinguas. Smithsonian Institution Press, Washington, pp 23–46

    Google Scholar 

  • Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18:821–829

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgments

The authors are very grateful to the Giant Armadillo Project for providing the tissue sample, and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) for the financial support.

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Correspondence to Eliana Paviotti-Fischer.

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Paviotti-Fischer, E., Chávez-Congrains, K., Desbiez, A.L.J. et al. Characterization of the complete mitochondrial genome for the Euphractus sexcinctus flavimanus (Mammalia, Xenarthra) subspecies. Conservation Genet Resour 8, 247–249 (2016). https://doi.org/10.1007/s12686-016-0545-8

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  • DOI: https://doi.org/10.1007/s12686-016-0545-8

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