Biomolecular NMR Assignments

, Volume 4, Issue 2, pp 151–154

Backbone and side chain 1H, 15N and 13C assignments for a thiol-disulphide oxidoreductase from the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125

  • Tony Collins
  • Manolis Matzapetakis
  • Helena Santos
Article

Abstract

Enzymes produced by psychrophilic organisms have successfully overcome the low temperature challenge and evolved to maintain high catalytic rates in their permanently cold environments. As an initial step in our attempt to elucidate the cold-adaptation strategies used by these enzymes we report here the 1H, 15N and 13C assignments for the reduced form of a thiol-disulphide oxidoreductase from the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125.

Keywords

Cold-adapted enzymes DsbA Reduced oxidoreductase Pseudoalteromonas haloplanktis TAC125 

References

  1. Berjanskii MV, Wishart DS (2005) A simple method to predict protein flexibility using secondary chemical shifts. J Am Chem Soc 127:14970–14971CrossRefGoogle Scholar
  2. Collins T, Meuwis MA, Gerday C, Feller G (2003) Activity, stability and flexibility in glycosidases adapted to extreme thermal environments. J Mol Biol 328:419–428CrossRefGoogle Scholar
  3. Collins T, Roulling F, Florence P, Marx JC, Feller G, Gerday C, D’Amico S (2008) Fundamentals of cold-adapted enzymes. In: Margesin R, Schinner F, Marx JC, Gerday C (eds) Psychrophiles: from biodiversity to biotechnology. Springer, Berlin-Heidelberg, pp 211–228CrossRefGoogle Scholar
  4. Feller G, Gerday C (2003) Psychrophilic enzymes: hot topics in cold adaptation. Nat Rev Microbiol 1:200–208CrossRefGoogle Scholar
  5. Ginzinger SW, Gerick F, Coles M, Heun V (2007) CheckShift: automatic correction of inconsistent chemical shift referencing. J Biomol NMR 39:223–227CrossRefGoogle Scholar
  6. Horne J, d’Auvergne EJ, Coles M, Velkov T, Chin Y, Charman WN, Prankerd R, Gooley PR, Scanlon MJ (2007) Probing the flexibility of the DsbA oxidoreductase from Vibrio cholerae–a 15N–1H heteronuclear NMR relaxation analysis of oxidized and reduced forms of DsbA. J Mol Biol 371:703–716CrossRefGoogle Scholar
  7. Ito K, Inaba K (2008) The disulfide bond formation (Dsb) system. Curr Opin Struct Biol 18:450–458CrossRefGoogle Scholar
  8. Lamosa P, Turner DL, Ventura R, Maycock C, Santos H (2003) Protein stabilization by compatible solutes. Effect of diglycerol phosphate on the dynamics of Desulfovibrio gigas rubredoxin studied by NMR. Eur J Biochem 270:4606–4614CrossRefGoogle Scholar
  9. Medigue C, Krin E, Pascal G, Barbe V, Bernsel A, Bertin PN, Cheung F, Cruveiller S, D’Amico S, Duilio A, Fang G, Feller G, Ho C, Mangenot S, Marino G, Nilsson J, Parrilli E, Rocha EP, Rouy Z, Sekowska A, Tutino ML, Vallenet D, von Heijne G, Danchin A (2005) Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125. Genome Res 15:1325–1335CrossRefGoogle Scholar
  10. Paxman JJ, Borg NA, Horne J, Thompson PE, Chin Y, Sharma P, Simpson JS, Wielens J, Piek S, Kahler CM, Sakellaris H, Pearce M, Bottomley SP, Rossjohn J, Scanlon MJ (2009) The structure of the bacterial oxidoreductase enzyme DsbA in complex with a peptide reveals a basis for substrate specificity in the catalytic cycle of DsbA enzymes. J Biol Chem 284:17835–17845CrossRefGoogle Scholar
  11. Schirra HJ, Renner C, Czisch M, Huber-Wunderlich M, Holak TA, Glockshuber R (1998) Structure of reduced DsbA from Escherichia coli in solution. Biochemistry 37:6263–6276CrossRefGoogle Scholar
  12. Williams ML, Chalmers DK, Martin JL, Scanlon MJ (2009) Backbone and side chain 1H, 15N and 13C assignments for the oxidised and reduced forms of the oxidoreductase protein DsbA from Staphylococcus aureus. Biomol NMR Assign. doi: 10.1007/s12104-009-9199-8
  13. Wishart DS, Sykes BD (1994) The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data. J Biomol NMR 4:171–180CrossRefGoogle Scholar

Copyright information

© Springer Science+Business Media B.V. 2010

Authors and Affiliations

  • Tony Collins
    • 1
  • Manolis Matzapetakis
    • 1
  • Helena Santos
    • 1
  1. 1.Instituto de Tecnologia Química e BiológicaUniversidade Nova de LisboaOeirasPortugal

Personalised recommendations