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Journal of Ocean University of China

, Volume 17, Issue 4, pp 855–863 | Cite as

The Impact of Irrigation on Bacterial Community Composition and Diversity in Liaohe Estuary Wetland

  • Tiantian Li
  • Hong Hu
  • Zhengyan Li
  • Jianye Zhang
  • Dong Li
Article
  • 3 Downloads

Abstract

In this study, the sequencing of 16S ribosomal DNA was used to characterize the soil bacterial community composition and diversity in Liaohe estuarine wetland. Soil samples were taken from different locations in the wetland dominated by reed. Moreover, the soil quality parameters were evaluated (pH, moisture, organic matter, total nitrogen, available nitrogen, total phosphorus, available phosphorus). The results showed that the organic matter and nutrient contents were significantly higher in irrigated wetland than those in natural wetland. Major phylogenic groups of bacteria in soil samples including Proteobacteria, Acidobacteria, Gemmatimonadetes, Actinobacteria and Cyanobacteria were analyzed and we found that Proteobacteria was the most abundant in the community, and the phylum Acidobacteria was more abundant in irrigated wetland. Beta diversity analyses indicated that the soil bacterial community was mainly affected by sampling sites rather than seasons. In general, the bacterial community in natural wetland was not significantly different with that in artificial irrigated wetland. Artificial hydraulic engineering irrigated according to the water requirement rule of reed, increased the production of reeds, changed the way of wetland soil material input, but the diversity of bacterial community kept stable relatively.

Key words

soil bacterial community Liaohe estuary wetland 16S rDNA sequencing nutrient 

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Notes

Acknowledgements

This study was funded by the National Water Pollution Control and Management Technology Major Project of China (No.2013ZX07202-007).

References

  1. Abed, R. M. M., Safi, N. M. D., Köster, J., de Beer, D., El-Nahhal, Y., and Rullkötter, J., 2002. Microbial diversity of a heavily polluted microbial mat and its community changes following degradation of petroleum compounds. Applied and Environmental Microbiology, 68: 1674–1683.CrossRefGoogle Scholar
  2. Ahn, C., and Peralta, R. M., 2009. Soil bacterial community structure and physicochemical properties in mitigation wetlands created in the Piedmont region of Virginia (USA). Ecological Engineering, 35: 1036–1042.CrossRefGoogle Scholar
  3. Ahn, C., Gillevet, P. M., Sikaroodi, M., and Wolf, K. L., 2009. An assessment of soil bacterial community structure and physicochemistry in two microtopographic locations of a palustrine forested wetland. Wetlands Ecol Manage, 17: 397–407.CrossRefGoogle Scholar
  4. Al-Hasan, R. H., Al-Bader, D. A., Sorkhoh, N. A., and Radwan, S. S. 1998. Evidence for n-alkane consumption and oxidation by filamentous cyanobacteria from oil-contaminated coasts of the Arabian Gulf. Marine Biology, 130: 521–527.CrossRefGoogle Scholar
  5. Ansola, G., Arroyo, P., and Miera, L. E. S., 2014. Characterisation of the soil bacterial community structure and composition of natural and constructed wetlands. Science of the Total Environment, 473-474: 63–71.CrossRefGoogle Scholar
  6. Arroyo, P., Miera, L. E., and Ansola, G., 2015. Influence of environmental variables on the structure and composition of soil bacterial communities in natural and constructed wetlands. Science of the Total Environment, 506-507: 380–390.CrossRefGoogle Scholar
  7. Barbier, E. B., Hacker, S. D., Kennedy, C., Koch, E. W., Stier, A. C., and Silliman, B. R., 2011. The value of estuarine and coastal ecosystem services. Ecological Monographs, 81: 169–193.CrossRefGoogle Scholar
  8. Chao, A., 1987. Estimating the population size for capturerecapture data with unequal catchability. Biometrics, 43: 783–791.CrossRefGoogle Scholar
  9. Clarke, K. R., 1993. Non-parametric multivariate analysis of changes in community structure. Australian Journal of Ecology, 18: 117–143.CrossRefGoogle Scholar
  10. DeBruyn, J. M., Nixon, L. T., Fawaz, M. N., Johnson, A. M., and Radosevich, M., 2011. Global biogeography and quantitative season dynamics of gemmatimonadetes in soil. Applied and Environmental Microbiology, 77: 6295–300.CrossRefGoogle Scholar
  11. Dos Santos, H. F., Cury, J. C., do Carmo, F. L., dos Santos, A. L., Tiedje, J., Elsas, J. D., Rosado, A. S., and Peixoto, R. S., 2011. Mangrove bacterial diversity and the impact of oil contamination revealed by pyrosequencing: Bacterial proxies for oil pollution. PLoS One, 6: e16943, DOI: 10.1371/journal.pone.0016943.CrossRefGoogle Scholar
  12. Edgar, R. C., 2013. UPARSE: Highly accurate OTU sequences from microbial amplicon reads. Nature Methods, 10: 996–998.CrossRefGoogle Scholar
  13. Fierer, N., Bradford, M. A., and Jackson, R. B., 2007. Toward an ecological classification of soil bacteria. Ecology, 88: 1354–1364.CrossRefGoogle Scholar
  14. Ge, Y., Zhang, J., Zhang, L., Yang, M., and He, J., 2008. Longterm fertilization regimes affect bacterial community structure and diversity of an agricultural soil in Northern China. Journal of Soils and Sediments, 8: 43–50.CrossRefGoogle Scholar
  15. Guittonny-Philippe, A., Masotti, V., Höhener, P., Boudenne, J. L., Viglione, J., and Laffont-Schwob, I., 2014. Constructed wetlands to reduce metal pollution from industrial catchments in aquatic Mediterranean ecosystems: A review to overcome obstacles and suggest potential solutions. Environment International, 64: 1–16.CrossRefGoogle Scholar
  16. He, X. Y., Wang, K. L., Zhang, W., Chen, Z. H., Zhu, Y. G., and Chen, H. S., 2008. Positive correlation between soil bacterial metabolic and plant species diversity and bacterial and fungal diversity in a vegetation succession on Karst. Plant Soil, 307: 123–134.CrossRefGoogle Scholar
  17. Hu, Y., Li, Y., Wang, L., Tang, Y., Chen, J., Fu, X., Le, Y., and Wu, J., 2012. Variability of soil organic carbon reservation capability between coastal saltmarsh and riverside freshwater wetland in Chongming Dongtan and its microbial mechanism. Journal of Environmental Sciences, 24: 1053–1063.CrossRefGoogle Scholar
  18. Inceoglu, O., Al-Soud, W. A., Salles, J. F., Semenov, A. V., and Elsas, J. D., 2011. Comparative analysis of bacterial communities in a potato field as determined by pyrosequencing. PLoS One, 6: e23321, DOI: 10.1371/journal.pone.0023321.CrossRefGoogle Scholar
  19. Jones, R. T., Robeson, M. S., Lauber, C. L., Hamady, M., Knight, R., and Fierer, N., 2009. A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. ISME J., 3: 442–453.CrossRefGoogle Scholar
  20. Kersters, K., De Vos, P., Gillis, M., Swings, J., Vandamme, P., and Stackebrandt, E., 2006. Introduction to the Proteobacteria. Prokaryotes, 5: 3–37.Google Scholar
  21. Kim, S. Y., Lee, S. H., Freeman, C., Fenner, N., and Kang, H., 2008. Comparative analysis of soil microbial communities and their responses to the short-term drought in bog, fen, and riparian wetlands. Soil Biology & Biochemistry, 40: 2874–2880.CrossRefGoogle Scholar
  22. Lauber, C. L., Hamady, M., Knight, R., and Fierer, N., 2009. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Applied and Environmental Microbiology, 75: 5111–5120.CrossRefGoogle Scholar
  23. Li, H., Bai, J., Yin, N., Zhao, Y. G., and Tian, W. J., 2013. The main factors affecting the number of bacteria in intertidal wetland of the Liaohe Estuary. Journal of Ocean University of China, 43: 67–71 (in Chinese with English abstract).Google Scholar
  24. Ligi, T., Oopkaup, K., Truu, M., Preem, J. K., Nãlvak, H., Mitsch, W. J., Mander, Ü., and Truu, J., 2013. Characterization of bacterial communities in soil and sediment of a created riverine wetland complex using high-throughput 16S rRNA amplicon sequencing. Ecological Engineering, http://dx.doi.org/10.1016/j.ecoleng.2013.09.007.Google Scholar
  25. López-Piñeiro, A., Muñoz, A., Zamora, E., and Ramírez, M., 2013. Influence of the management regime and phenological state of the vines on the physicochemical properties and the seasonal fluctuations of the microorganisms in a vineyard soil under semi-arid conditions. Soil & Tillage Research, 126: 119–126.CrossRefGoogle Scholar
  26. Lu, R. K., 2000. Soil Agricultural Chemical Analysis. China’s Agricultural Science and Technology Press, Beijing, 1–44.Google Scholar
  27. McCune, B., and Grace, J. B., 2002. Analysis of ecological communities. MJM software design, Gleneden Beach, Oregon, http://www.pcord.com.Google Scholar
  28. Menon, R., Jackson, C. R., and Holland, M. M., 2013. The influence of vegetation on microbial enzyme activity and bacterial community structure in freshwater constructed wetland sediments. Wetlands, 33: 365–378.CrossRefGoogle Scholar
  29. Nemergut, D. R., Anderson, S. P., Cleveland, C. C., Martin, A. P., Miller, A. E., Seimon, A., and Schmidt, S. K., 2007. Microbial community succession in an unvegetated, recently deglaciated soil. Microbiology Ecology, 53: 110–122.CrossRefGoogle Scholar
  30. Phillips, L. A., Schefe, C. R., Fridman, M., O’Halloran, N., Armstrong, R. D., and Mele, P. M., 2015. Organic nitrogen cycling microbial communities are abundant in a dry Australian agricultural soil. Soil Biology & Biochemistry, 86: 201–211.CrossRefGoogle Scholar
  31. Pereira, E., Silva, M. C., Semenov, A. V., Schmitt, H., Elsas, J. D., and Salles, J. F., 2013. Microbe-mediated processes as indicators to establish the normal operating range of soil functioning. Soil Biology & Biochemistry, 57: 995–1002.CrossRefGoogle Scholar
  32. Peralta, A. L., Ludmer, S., Matthews, J. W., and Kent, A. D., 2014. Bacterial community response to changes in soil redox potential along a moisture gradient in restored wetlands. Ecological Engineering, 73: 246–253.CrossRefGoogle Scholar
  33. Peralta, A. L., Ludmer, S., and Kent, A. D., 2013. Hydrologic history influences microbial community composition and nitrogen cycling under experimental drying/wetting treatments. Soil Biology & Biochemistry, 66: 29–37.CrossRefGoogle Scholar
  34. Peralta, R. M., Ahn, C., and Gillevet, P. M., 2013. Characterization of soil bacterial community structure and physicochemical properties in created and natural wetlands. Science of the Total Environment, 443: 725–732.CrossRefGoogle Scholar
  35. Peng, R., Zou, L., and Wan, H., 2012. Studies on the accumulation of organic carbon in the soil in the reed wetland at Liaohe Estuary. Periodical of Ocean University of China, 42 (5): 28–34.Google Scholar
  36. Rainey, F. A., Ray, K., Ferreira, M., Gatz, B. Z., Nobre, M. F., Bagaley, D., Rash, B. A., Park, M. J., Earl, A. M., Shank, N. C., Small, A. M., Henk, M. C., Battista, J. R., Kämpfer, P., and Costa, M. S., 2005. Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample. Applied and Environmental Microbiology, 71: 5225–5235.CrossRefGoogle Scholar
  37. Rocker, D., Brinkhoff, T., Grüner, N., Dogs, M., Simon, M., 2012. Composition of humic acid-degrading estuarine and marine bacterial communities. Microbiology Ecology, 80: 45–63.CrossRefGoogle Scholar
  38. Roesch, L. F., Fulthorpe, R. R., Riva, A., Casella, G., Hadwin, A. K. M., Kent, A. D., Daroub, S. H., Camargo, F. A. O., Farmerie, W. G., and Triplett, E. W., 2007. Pyrosequencing enumerates and contrasts soil microbial diversity. ISME Journal, 4: 283–290.CrossRefGoogle Scholar
  39. Sato, K., Kato, Y., Taguchi, G., Nogawa, M., Yokota, A., and Shimosaka, M., 2009. Chitiniphilus shinanonensis gen. nov., sp. nov., a novel chitin-degrading bacterium belonging to Betaproteo bacteria. Journal of General and Applied Microbiology, 55: 147–153.Google Scholar
  40. Suleiman, A. K., Manoelib, L., Boldo, J. T., Pereira, M. G., and Roesch, L. F. W., 2013. Shifts in soil bacterial community after eight years of land-use change. Systematic and Applied Microbiology, 36: 137–144.CrossRefGoogle Scholar
  41. Tian, W., Zhao, Y., Sun, H., Bai, J., Wang, Y., and Wu, C., 2014. The effect of irrigation with oil-polluted water on microbial communities in estuarine reed rhizosphere soils. Ecological Engineering, 70: 275–281.CrossRefGoogle Scholar
  42. Urbanová, Z., and Bárta, J., 2015. Effects of long-term drainage on microbial community composition vary between peatland types. Soil Biology & Biochemistry, 92: 16–26.CrossRefGoogle Scholar
  43. Wardle, D. A., Bardgett, R. D., Klironomos, J. N., Setälä, H., Putten, W. H., and Wall, D. H., 2004. Ecological linkages between aboveground and belowground biota. Science, 304: 1629–1633.CrossRefGoogle Scholar
  44. Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R., 2007. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73: 5261–5267.CrossRefGoogle Scholar
  45. Wang, Y., Sheng, H. F., He, Y., Wu, J. Y., Jiang, Y. X., Tam, N. F., and Zhou, H. W., 2012. Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of Illumina tags. Applied and Environmental Microbiology, 78: 8264–8271.CrossRefGoogle Scholar
  46. Wang, Z. Y., Xin, Y. Z., Gao, D. M., Li, F. M., Morgan, J., and Xin, B. S., 2010. Microbial community characteristics in a degraded wetland of the Yellow River Delta. Pedosphere, 20: 466–478.CrossRefGoogle Scholar
  47. Whittaker, R. H., 1972. Evolution and measurement of species diversity. Taxon, 21: 213–251.CrossRefGoogle Scholar
  48. Xu, Z., Yu, G., Zhang, X., Ge, J., He, N., Wang, Q., and Wang, D., 2014. The variations in soil microbial communities, enzyme activities and their relationships with soil organic matter decomposition along the northern slope of Changbai Mountain. Applied Soil Ecology, 86: 19–29.CrossRefGoogle Scholar
  49. Yin, N., Wang, L. P., He, S. L., and Bai, J., 2014. Characteristics of soil microbial community structure in the process of ecological restoration of Liaohe estuary wetland. Journal of Hebei Normal University/Nature Science Edition, 38: 195–199 (in Chinese with English abstract).Google Scholar
  50. Yu, Y., Wang, H., Liu, J., Wang, Q., Shen, T., Guo, W., and Wang, R., 2012. Shifts in microbial community function and structure along the successional gradient of coastal wetlands in Yellow River Estuary. European Journal of Soil Biology, 49: 12–21.CrossRefGoogle Scholar
  51. Zhang, X., Wang, Z., Liu, X., Hu, X., Liang, X., and Hu, Y., 2013. Degradation of diesel pollutants in Huangpu-Yangtze River estuary wetland using plant-microbe systems. International Biodeterioration & Biodegradation, 76: 71–75.CrossRefGoogle Scholar
  52. Zhang, Y., Zheng, X., and Wu, C., 2011. Experimental study of evapotranspiration from phragmites australis wetland in Liaohe Estuary. Advances in Water Science, 22 (3): 352–358.Google Scholar
  53. Zhao, X. L., Zhou, G. S., and Lu, G. H., 2009. The study on soil microbial characteristic under different types of vegetation in Liaohe Delta. Chinese Journal of Soil Science, 40: 1266–1269 (in Chinese with English abstract).Google Scholar
  54. Zhao, X. L., Zhou, G. S., Zhou, L., Lu, G. H., Jia, Q. Y., and Xie, Y. B., 2008. Seasonal changes in soil microbial biomass C in bulrush wetlands of Panjin, Northeast China. Chinese Journal of Soil Science, 39: 43–46 (in Chinese with English abstract).Google Scholar

Copyright information

© Science Press, Ocean University of China and Springer-Verlag GmbH Germany, part of Springer Nature 2018

Authors and Affiliations

  1. 1.College of Environmental Science and EngineeringOcean University of ChinaQingdaoChina
  2. 2.Colleget of Marine Life SciencesOcean University of ChinaQingdaoChina
  3. 3.Institute of Wetland SciencePanjinChina

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