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Mycological Progress

, Volume 18, Issue 5, pp 671–682 | Cite as

Kevinhydea brevistipitata gen. et sp. nov. and Helicoma hydei sp. nov., (Tubeufiaceae) from decaying wood habitats

  • Ning-Guo Liu
  • Yong-Zhong Lu
  • D. Jayarama Bhat
  • Eric H. C. McKenzie
  • Saisamorn Lumyong
  • Juangjun Jumpathong
  • Jian-Kui (Jack) LiuEmail author
Original Article
  • 12 Downloads

Abstract

Kevinhydea brevistipitata gen. et sp. nov., and Helicoma hydei sp. nov., collected on decaying wood in terrestrial and freshwater habitats, respectively, are described and illustrated. Kevinhydea brevistipitata, the type species for a novel monotypic genus (Kevinhydea), is characterized by its macronematous, short conidiophores, and dictyosporous conidia. Helicoma hydei morphologically resembles H. guttulatum, but they are phylogenetically distinct species. Phylogenetic analyses of combined LSU, ITS, and TEF1α sequence data of 63 taxa were carried out to infer the phylogenetic affinity of new taxa within the family Tubeufiaceae. Additionally, phylogenetic analyses for the genus Helicoma, comprising 33 taxa, were performed separately to justify the new species H. hydei. Kevinhydea brevistipitata and Helicoma hydei are phylogenetically distinct from other species in Tubeufiaceae. A morphological comparison of dictyosporous hyphomycete genera in Tubeufiaceae is provided.

Keywords

3 new taxa Asexual morph Dothideomycetes Phylogeny Taxonomy 

Notes

Acknowledgements

The Faculty of Agriculture, Natural Resources and Environment, Naresuan University is acknowledged for providing Ph.D. research scholarship to Ning-Guo Liu. We are grateful to Dr. Shaun Pennycook for providing the advice on fungal nomenclature.

Funding information

National Natural Science Foundation of China (NSFC 31600032) and Science and Technology Foundation of Guizhou Province (LH [2015]7061).

References

  1. Barr ME (1979) A classification of Loculoascomycetes. Mycologia 71(5):935–957.  https://doi.org/10.2307/3759283 CrossRefGoogle Scholar
  2. Barr ME (1980) On the family Tubeufiaceae (Pleosporales). Mycotaxon 12:137–167Google Scholar
  3. Bezerra JDP, Oliveira RJV, Paiva LM, Silva GA, Groenewald JZ, Crous PW, Souza-Motta CM (2017) Bezerromycetales and Wiesneriomycetales ord. nov. (class Dothideomycetes), with two novel genera to accommodate endophytic fungi from Brazilian cactus. Mycol Prog 16(4):297–309.  https://doi.org/10.1007/s11557-016-1254-0 CrossRefGoogle Scholar
  4. Boonmee S, Zhang Y, Chomnunti P, Chukeatirote E, Tsui CKM, Bahkali AH, Hyde KD (2011) Revision of lignicolous Tubeufiaceae based on morphological reexamination and phylogenetic analysis. Fungal Divers 51:63–102.  https://doi.org/10.1007/s13225-011-0147-4 CrossRefGoogle Scholar
  5. Boonmee S, Rossman AY, Liu JK, Li WJ, Dai DQ, Bhat JD, Jones EBG, McKenzie EHC, Xu JC, Hyde KD (2014) Tubeufiales, ord. nov., integrating sexual and asexual generic names. Fungal Divers 68:239–298.  https://doi.org/10.1007/s13225-014-0304-7 CrossRefGoogle Scholar
  6. Brahmanage RS, Lu YZ, Bhat DJ, Wanasinghe DN, Yan JY, Hyde KD, Boonmee S (2017) Phylogenetic investigations on freshwater fungi in Tubeufiaceae (Tubeufiales) reveals the new genus Dictyospora and new species Chlamydotubeufia aquatica and Helicosporium flavum. Mycosphere 8(7):917–933.  https://doi.org/10.5943/mycosphere/8/7/8 CrossRefGoogle Scholar
  7. Castañeda-Ruíz RF, Guarro J, Gené J (2000) Two new hyphomycetes from Arecaceae in La Gomera, Canary Islands. Mycotaxon 76:85–92Google Scholar
  8. Chaiwan N, Lu YZ, Tibpromma S, Bhat DJ, Hyde KD, Boonmee S (2017) Neotubeufia gen. nov. and Tubeufia guangxiensis sp. nov. (Tubeufiaceae) from freshwater habitats. Mycosphere 8(9):1443–1456.  https://doi.org/10.5943/mycosphere/8/9/9 CrossRefGoogle Scholar
  9. Chomnunti P, Hongsanan S, Aguirre-Hudson B, Tian Q, Peršoh D, Dhami MK, Alias AS, Xu JC, Liu XZ, Stadler M (2014) The sooty moulds. Fungal Divers 66:1–36.  https://doi.org/10.1007/s13225-014-0278-5 CrossRefGoogle Scholar
  10. Corda AJ (1837) Icones fungorum hucusque cognitorum, vol 2. Calve Google Scholar
  11. Doilom M, Dissanayake AJ, Wanasinghe DN, Boonmee S, Liu JK, Bhat DJ, Taylor JE, Bahkali AH, McKenzie EHC, Hyde KD (2017) Microfungi on Tectona grandis (teak) in northern Thailand. Fungal Divers 82:107–182.  https://doi.org/10.1007/s13225-016-0368-7 CrossRefGoogle Scholar
  12. Goh TK, Kuo CH (2018) A new species of Helicoön from Taiwan. Phytotaxa 346(2):141–156.  https://doi.org/10.11646/phytotaxa.346.2.2 CrossRefGoogle Scholar
  13. Goh TK, Hyde KD, Ho WH (1998) Aquaphila albicans gen. et sp. nov., a hyphomycete from submerged wood in the tropics. Mycol Res 102(5):587–592.  https://doi.org/10.1017/S0953756297005303 CrossRefGoogle Scholar
  14. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser, pp 95–98Google Scholar
  15. Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42(2):182–192.  https://doi.org/10.1093/sysbio/42.2.182 CrossRefGoogle Scholar
  16. Hughes SJ (1958) Revisiones hyphomycetum aliquot cum appendice de nominibus rejiciendis. Can J Bot 36(6):727–836.  https://doi.org/10.1139/b58-067 CrossRefGoogle Scholar
  17. Hyde KD, Hongsanan S, Jeewon R, Bhat DJ, McKenzie EHC, Jones EBG, Phookamsak R, Ariyawansa HA, Boonmee S, Zhao Q, Abdel-Aziz FA, Abdel-Wahab MA, Banmai S, Chomnunti P, Cui BK, Daranagama DA, Das K, Dayarathne MC, de Silva NI, Dissanayake AJ, Doilom M, Ekanayaka AH, Gibertoni TB, Góes-Neto A, Huang SK, Jayasiri SC, Jayawardena RS, Konta S, Lee HB, Li WJ, Lin CG, Liu JK, Lu YZ, Luo ZL, Manawasinghe IS, Manimohan P, Mapook A, Niskanen T, Norphanphoun C, Papizadeh M, Perera RH, Phukhamsakda C, Richter C, Santiago d A, ALCM D-SER, Senanayake IC, Tanaka K, Tennakoon TMDS, Thambugala KM, Tian Q, Tibpromma S, Thongbai B, Vizzini A, Wanasinghe DN, Wijayawardene NN, Wu HX, Yang J, Zeng XY, Zhang H, Zhang JF, Bulgakov TS, Camporesi E, Bahkali AH, Amoozegar MA, Araujo-Neta LS, Ammirati JF, Baghela A, Bhatt RP, Bojantchev D, Buyck B, da Silva GA, de Lima CLF, de Oliveira RJV, de Souza CAF, Dai YC, Dima B, Duong TT, Ercole E, Mafalda-Freire F, Ghosh A, Hashimoto A, Kamolhan S, Kang JC, Karunarathna SC, Kirk PM, Kytövuori I, Lantieri A, Liimatainen K, Liu ZY, Liu XZ, Lücking R, Medardi G, Mortimer PE, Nguyen TTT, Promputtha I, Raj KNA, Reck MA, Lumyong S, Shahzadeh-Fazeli SA, Stadler M, Soudi MR, Su HY, Takahashi T, Tangthirasunun N, Uniyal P, Wang Y, Wen T-C, Xu JC, Zhang ZK, Zhao YC, Zhou JL, Zhu L (2016) Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 80:1–270.  https://doi.org/10.1007/s13225-016-0373-x CrossRefGoogle Scholar
  18. Index Fungorum (2018) Available from: www.indexfungorum.org/Names/Names.asp
  19. Jayasiri SC, Hyde KD, Ariyawansa HA, Bhat J, Buyck B, Cai L, Dai YC, Abd-Elsalam KA, Ertz D, Hidayat I (2015) The faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Divers 74:3–18.  https://doi.org/10.1007/s13225-015-0351-8 CrossRefGoogle Scholar
  20. Jeewon R, Hyde KD (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7(11):1669–1677.  https://doi.org/10.5943/mycosphere/7/11/4 CrossRefGoogle Scholar
  21. Kirk PM, Cannon PF, David JC, Stalpers JA (2001) Ainsworth & Bisby’s dictionary of the fungi, 9th edn. CABI, Wallingford, pp 1–655Google Scholar
  22. Kodsueb R, Jeewon R, Vijaykrishna D, McKenzie EHC, Lumyong P, Lumyong S, Hyde KD (2006) Systematic revision of Tubeufiaceae based on morphological and molecular data. Fungal Divers 21:105–130Google Scholar
  23. Larsson A (2014) AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics 30(22):3276–3278.  https://doi.org/10.1093/bioinformatics/btu531 CrossRefGoogle Scholar
  24. Link HF (1809) Observationes in ordines plantarum naturales. Dissertatio I. Mag Ges naturf Fr Berlin 3:3–42.Google Scholar
  25. Liu JK, Chomnunti P, Cai L, Phookamsak R, Chukeatirote E, Jones EBG, Moslem M, Hyde KD (2010) Phylogeny and morphology of Neodeightonia palmicola sp. nov. from palms. Sydowia 62:261–276Google Scholar
  26. Liu JK, Phookamsak R, Doilom M, Wikee S, Li YM, Ariyawansa H, Boonmee S, Chomnunti P, Dai DQ, Bhat JD (2012) Towards a natural classification of Botryosphaeriales. Fungal Divers 57:149–210.  https://doi.org/10.1007/s13225-012-0207-4 CrossRefGoogle Scholar
  27. Liu JK, Hyde KD, Jeewon R, Phillips AJL, Maharachchikumbura SSN, Ryberg M, Liu ZY, Zhao Q (2017) Ranking higher taxa using divergence times: a case study in Dothideomycetes. Fungal Divers 84:75–99.  https://doi.org/10.1007/s13225-017-0385-1 CrossRefGoogle Scholar
  28. Liu JK, Lu YZ, Cheewangkoon R, To-Anun C (2018) Phylogeny and morphology of Helicotubeufia gen. nov., with three new species in Tubeufiaceae from aquatic habitats. Mycosphere 9(3):495–509.  https://doi.org/10.5943/mycosphere/9/3/4 CrossRefGoogle Scholar
  29. Lu YZ, Boonmee S, Bhat DJ, Hyde KD, Kang JC (2017a) Helicosporium luteosporum sp. nov. and Acanthohelicospora aurea (Tubeufiaceae, Tubeufiales) from terrestrial habitats. Phytotaxa 319(3):241–253.  https://doi.org/10.11646/phytotaxa.319.3.3 CrossRefGoogle Scholar
  30. Lu YZ, Boonmee S, Dai DQ, Liu JK, Hyde KD, Bhat DJ, Ariyawansa H, Kang JC (2017b) Four new species of Tubeufia (Tubeufiaceae, Tubeufiales) from Thailand. Mycol Prog 16(4):403–417.  https://doi.org/10.1007/s11557-017-1280-6 CrossRefGoogle Scholar
  31. Lu YZ, Boonmee S, Liu JK, Hyde KD, Bhat DJ, Eungwanichayapant PD, Kang JC (2017c) Novel Neoacanthostigma species from aquatic habitats. Cryptogam Mycol 38(2):169–190.  https://doi.org/10.7872/crym/v38.iss2.2017.169 CrossRefGoogle Scholar
  32. Lu YZ, Boonmee S, Liu JK, Hyde KD, McKenzie EHC, Eungwanichayapant PD, Kang JC (2018a) Multi-gene phylogenetic analyses reveals Neohelicosporium gen. nov. and five new species of helicosporous hyphomycetes from aquatic habitats. Mycol Prog 17:631–646.  https://doi.org/10.1007/s11557-017-1366-1 CrossRefGoogle Scholar
  33. Lu YZ, Liu JK, Hyde KD, Jeewon R, Kang JC, Fan C, Boonmee S, Bhat DJ, Luo ZL, Lin CG, Eungwanichayapant PD (2018b) A taxonomic reassessment of the Tubeufiales based on multi-locus phylogeny and morphology. Fungal Divers 92:131–344.  https://doi.org/10.1007/s13225-018-0411-y CrossRefGoogle Scholar
  34. Lumbsch HT, Huhndorf SM (2010) Outline of Ascomycota—2009. Myconet 14:1–64Google Scholar
  35. Luo ZL, Bhat DJ, Jeewon R, Boonmee S, Bao DF, Zhao YC, Chai HM, Su HY, Su XJ, Hyde KD (2017) Molecular phylogeny and morphological characterization of asexual fungi (Tubeufiaceae) from freshwater habitats in Yunnan, China. Cryptogam Mycol 38:27–53.  https://doi.org/10.7872/crym/v38.iss1.2017.27 CrossRefGoogle Scholar
  36. Matsushima T (1983) Matsushima Mycological Memoirs No. 3, Published by the auther, Kobe, Japan.Google Scholar
  37. Nees von Esenbeck CG (1817) Das System der Pilze und Schwämme. Stahelsche Buchhandlung, Würzburg, pp 1–334Google Scholar
  38. Nylander JA (2004) MrModeltest v2, Program distributed by the author, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.Google Scholar
  39. Penzig AJO, Saccardo PA (1897) Diagnoses fungorum novorum in Insula Java collectorum. Series secunda. Malpighia 11:491–530Google Scholar
  40. Phookamsak R, Lu YZ, Hyde KD, Jeewon R, Li JF, Doilom M, Boonmee S, Promputtha I (2018) Phylogenetic characterization of two novel Kamalomyces species in Tubeufiaceae (Tubeufiales). Mycol Prog 17:647–660.  https://doi.org/10.1007/s11557-017-1365-2 CrossRefGoogle Scholar
  41. Promputtha I, Miller AN (2010) Three new species of Acanthostigma (Tubeufiaceae, Dothideomycetes) from Great Smoky Mountains National Park. Mycologia 102(3):574–587.  https://doi.org/10.3852/09-051 CrossRefGoogle Scholar
  42. Rajeshkumar KC, Sharma R (2013) Tamhinispora a new genus belongs to family Tubeufiaceae from the Western Ghats, India based on morphology and phylogenetic analysis. Mycosphere 4(2):165–174.  https://doi.org/10.5943/mycosphere/4/2/2 CrossRefGoogle Scholar
  43. Rajeshkumar KC, Bhat DJ, Lad SS, Wijayawardene NW, Singh SK, Pandkar MR, Maurya DK, Ashtekar ND, Hyde KD (2018) Morphology and phylogeny of Tamhinispora srinivasanii sp. nov. (Tubeufiaceae) from northern Western Ghats, India. Phytotaxa 346(1):113–120.  https://doi.org/10.11646/phytotaxa.346.1.7 CrossRefGoogle Scholar
  44. Rambaut A (2006) FigTree. Tree figure drawing tool version 1.3.1, Institute of Evolutionary Biology, University of Edinburgh. <http://tree.bio.ed.ac.uk/software/figtree/>.
  45. Rannala B, Yang ZH (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J Mol Evol 43(3):304–311.  https://doi.org/10.1007/BF02338839 CrossRefGoogle Scholar
  46. Rehner SA, Buckley E (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97(1):84–98.  https://doi.org/10.3852/mycologia.97.1.84 Google Scholar
  47. Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61(3):539–542.  https://doi.org/10.1093/sysbio/sys029 CrossRefGoogle Scholar
  48. Rossman AY (1987) The Tubeufiaceae and similar Loculoascomycetes. Mycol Pap 157:1–71Google Scholar
  49. Slippers B, Boissin E, Phillips AJL, Groenewald JZ, Lombard L, Wingfield MJ, Postma A, Burgess T, Crous PW (2013) Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework. Stud Mycol 76:31–49.  https://doi.org/10.3114/sim0020 CrossRefGoogle Scholar
  50. Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690.  https://doi.org/10.1093/bioinformatics/btl446 CrossRefGoogle Scholar
  51. Subramanian CV (1994) Hyphomycetes from South East Asia-novelties from Singapore and Malaysia. Kavaka 22(23):52–76Google Scholar
  52. Suetrong S, Rungjindamai N, Sommai S, Rung-Areerate P, Sommrithipol S, Jones EBG (2014) Wiesneriomyces a new lineage of Dothideomycetes (Ascomycota) basal to Tubeufiales. Phytotaxa 176(1):283–297.  https://doi.org/10.11646/phytotaxa.176.1.27 CrossRefGoogle Scholar
  53. Swofford DL (2002) PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4.Sinauer Associates, SunderlandGoogle Scholar
  54. Tanney J, Miller AN (2017) Asexual-sexual morph connection in the type species of Berkleasmium. IMA Fungus 8(1):99–105.  https://doi.org/10.5598/imafungus.2017.08.01.07 CrossRefGoogle Scholar
  55. Taylor JE, Hyde KD (2003) Microfungi of tropical and temperate palms. Fungal Diversity Press.Google Scholar
  56. Tsui CKM, Berbee ML (2006) Phylogenetic relationships and convergence of helicosporous fungi inferred from ribosomal DNA sequences. Mol Phylogenet Evol 39(3):587–597.  https://doi.org/10.1016/j.ympev.2006.01.025 CrossRefGoogle Scholar
  57. Tsui CKM, Sivichai S, Berbee ML (2006) Molecular systematics of Helicoma, Helicomyces and Helicosporium and their teleomorphs inferred from rDNA sequences. Mycologia 98(1):94–104.  https://doi.org/10.1080/15572536.2006.11832715 CrossRefGoogle Scholar
  58. Verma RK, Sharma N, Soni KK (2008) Forest Fungi of Central India. International Book Distributing Company.Google Scholar
  59. Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172(8):4238–4246.  https://doi.org/10.1128/jb.172.8.4238-4246 CrossRefGoogle Scholar
  60. White TJ, Bruns T, Lee SJWT, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, California, pp 315–322Google Scholar
  61. Zhao GZ, Liu XZ, Wu WP (2007) Helicosporous hyphomycetes from China. Fungal Divers 26:313–524Google Scholar

Copyright information

© German Mycological Society and Springer-Verlag GmbH Germany, part of Springer Nature 2019

Authors and Affiliations

  1. 1.Center for Bioinformatics, School of Life Science and TechnologyUniversity of Electronic Science and Technology of ChinaChengduPeople’s Republic of China
  2. 2.Guizhou Key Laboratory of Agricultural BiotechnologyGuizhou Academy of Agricultural SciencesGuiyangPeople’s Republic of China
  3. 3.Faculty of Agriculture, Natural Resources and EnvironmentNaresuan UniversityPhitsanulokThailand
  4. 4.Center of Excellence in Fungal ResearchMae Fah Luang UniversityChiang RaiThailand
  5. 5.School of Pharmaceutical EngineeringGuizhou Institute of TechnologyGuiyangPeople’s Republic of China
  6. 6.Azad Housing SocietyGoa VelhaIndia
  7. 7.Landcare ResearchAucklandNew Zealand
  8. 8.Department of Biology, Faculty of ScienceChiang Mai UniversityChiang MaiThailand
  9. 9.Center for Agricultural BiotechnologyNaresuan UniversityPhitsanulokThailand

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