Advertisement

Science China Life Sciences

, Volume 62, Issue 9, pp 1257–1260 | Cite as

Update soybean Zhonghuang 13 genome to a golden reference

  • Yanting Shen
  • Huilong Du
  • Yucheng Liu
  • Lingbin Ni
  • Zheng Wang
  • Chengzhi LiangEmail author
  • Zhixi TianEmail author
Letter to the Editor

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

Notes

Acknowledgements

This work was supported by the National Key Research & Development Program of China (2017YFD0101305), National Natural Science Foundation of China (31525018, 31788103), and the State Key Laboratory of Plant Cell and Chromosome Engineering (PCCE-KF-2019-05).

Compliance and ethics The author(s) declare that they have no conflict of interest.

Supplementary material

11427_2019_9822_MOESM1_ESM.docx (31 kb)
Supplementary material, approximately 30.6 KB.
11427_2019_9822_MOESM2_ESM.xlsx (13 kb)
Table S1 Comparison of Gmax_ZH13 and Gmax_ZH13_v2.0
11427_2019_9822_MOESM3_ESM.gff3 (147.7 mb)
Supplementary material, approximately 147 MB.
11427_2019_9822_MOESM4_ESM.txt (1.4 mb)
Table S3 Chromosome location of TEs with clear structural boundaries
11427_2019_9822_MOESM5_ESM.xlsx (10 kb)
Table S4 Transposable element and repeat sequence composition in the Gmax_ZH13_v2.0 genome
11427_2019_9822_MOESM6_ESM.txt (36.3 mb)
Table S5 Chromosome location of repeat sequences
11427_2019_9822_MOESM7_ESM.txt (1 kb)
Table S6 Locations of centromere region for each chromosome
11427_2019_9822_MOESM8_ESM.txt (11.7 mb)
Table S7 Expression pattern of protein coding genes in 27 different soybean samples
11427_2019_9822_MOESM9_ESM.txt (184 kb)
Table S8 Expression pattern of miRNA in 27 different soybean samples

References

  1. Cantarel, B.L., Korf, I., Robb, S.M.C., Parra, G., Ross, E., Moore, B., Holt, C., Sánchez Alvarado, A., and Yandell, M. (2008). MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Res 18, 188–196.CrossRefPubMedPubMedCentralGoogle Scholar
  2. Du, H., and Liang, C. (2018). Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads. bioRxiv, https://doi.org/10.1101/345983.CrossRefGoogle Scholar
  3. Liu, T., Fang, C., Ma, Y., Shen, Y., Li, C., Li, Q., Wang, M., Liu, S., Zhang, J., Zhou, Z., et al. (2016). Global investigation of the co-evolution of MIRNA genes and microRNA targets during soybean domestication. Plant J 85, 396–409.CrossRefPubMedPubMedCentralGoogle Scholar
  4. Shen, Y., Liu, J., Geng, H., Zhang, J., Liu, Y., Zhang, H., Xing, S., Du, J., Ma, S., and Tian, Z. (2018). De novo assembly of a Chinese soybean genome. Sci China Life Sci 61, 871–884.CrossRefPubMedGoogle Scholar
  5. Wang, Z., and Tian, Z.X. (2015). Genomics progress will facilitate molecular breeding in soybean. Sci China Life Sci 58, 813–815.CrossRefPubMedGoogle Scholar
  6. Yang, J., and Huang, X. (2018). A new high-quality genome sequence in soybean. Sci China Life Sci 61, 1604–1605.CrossRefPubMedGoogle Scholar

Copyright information

© Science China Press and Springer-Verlag GmbH Germany, part of Springer Nature 2019

Authors and Affiliations

  • Yanting Shen
    • 1
    • 2
  • Huilong Du
    • 3
    • 4
  • Yucheng Liu
    • 2
    • 4
  • Lingbin Ni
    • 2
    • 4
  • Zheng Wang
    • 2
  • Chengzhi Liang
    • 3
    • 4
    Email author
  • Zhixi Tian
    • 2
    • 4
    Email author
  1. 1.School of Pharmaceutical SciencesGuangzhou University of Chinese MedicineGuangzhouChina
  2. 2.State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Innovative Academy of Seed DesignChinese Academy of SciencesBeijingChina
  3. 3.State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Innovative Academy of Seed DesignChinese Academy of SciencesBeijingChina
  4. 4.University of Chinese Academy of SciencesBeijingChina

Personalised recommendations