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Tree Genetics & Genomes

, Volume 2, Issue 1, pp 10–24 | Cite as

QTLs and candidate genes for wood properties in maritime pine (Pinus pinaster Ait.)

  • David Pot
  • Jose-Carlos Rodrigues
  • Philippe Rozenberg
  • Guillaume Chantre
  • Josquin Tibbits
  • Christine Cahalan
  • Frédérique Pichavant
  • Christophe PlomionEmail author
Original Paper

Abstract

A three-generation outbred pedigree of 186 individuals was used to identify the genomic regions involved in the variability of chemical and physical wood properties of Pinus pinaster. A total of 54 quantitative trait loci (QTLs) was detected, with an average of 2.4 QTLs per trait. Clusters of wood properties QTLs were found at several points in the genome, suggesting the existence of pleiotropic effects of a limited number of genes. The co-localizations observed in this study are in accordance with the genetic correlations previously reported in the literature. In addition, in an attempt to identify the genes underlying the QTLs, nine wood quality candidate genes involved in cell wall structure were localized on the genetic map. Only one of them, Korrigan, a gene encoding for a β 1-4 endo-glucanase known in Arabidopis thaliana to be involved in polysaccharide biosynthesis, co-localized with a wood quality QTL cluster involved in hemicellulose content and fibre characteristics. This finding is in accordance with results previously reported for this gene regarding its expression variability (transcriptome and proteome levels) and patterns of molecular evolution. The pertinence of this result will be tested in more rigorous designs in order to identify early selection predictors for wood quality.

Keywords

Wood quality QTL Candidate gene Korrigan Pinus pinaster 

Notes

Acknowledgements

We thank Dr. H. Höfte for his helpful comments and advice.

This work was supported by funding from the European Union (GENIALITY: FAIR CT98-3953, GEMINI: QLRT-1999-00942), the Aquitaine Region (no. 2002 0307002A) and the Ministère de la Recherche (Biotech programme).

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Copyright information

© Springer-Verlag 2006

Authors and Affiliations

  • David Pot
    • 1
    • 2
  • Jose-Carlos Rodrigues
    • 3
  • Philippe Rozenberg
    • 4
  • Guillaume Chantre
    • 5
  • Josquin Tibbits
    • 6
  • Christine Cahalan
    • 7
  • Frédérique Pichavant
    • 8
  • Christophe Plomion
    • 1
    Email author
  1. 1.UMR 1202 BIOGECO, INRAEquipe de GénétiqueCestasFrance
  2. 2.UMR 1096 PIA, CIRADMontpellierFrance
  3. 3.Instituto Investigaçao Cientifica TropicalLisbonPortugal
  4. 4.INRA, Unité d’AméliorationGénétique et Physiologie ForestièresOlivetFrance
  5. 5.AFOCEL, Station Territoriale Sud Ouest Domaine de SivaillanMoulis en MédocFrance
  6. 6.Forest Science CentreThe University of MelbourneCreswickAustralia
  7. 7.School of Agricultural and Forest SciencesUniversity of WalesBangorUK
  8. 8.Institut du PinUniversité de Bordeaux 1TalenceFrance

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