Diffeomorphic Metric Landmark Mapping Using Stationary Velocity Field Parameterization
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Abstract
Large deformation diffeomorphic metric mapping (LDDMM) has been shown as an effective computational paradigm to measure anatomical variability. However, its time-varying vector field parameterization of diffeomorphism flow leads to computationally expensive implementation, as well as some theoretical issues in metric based shape analysis, e.g. high order metric approximation via Baker–Campbell–Hausdorff (BCH) formula. To address these problems, we study the role of stationary vector field parameterization in context of LDDMM. Under this setting registration is formulated as finding the Lie group exponential path with minimal energy in Riemannian manifold of diffeomorphisms bringing two shapes together. Accurate derivation of Euler–Lagrange equation shows that optimal vector field for landmark matching is associated with singular momenta at landmark trajectories in whole time domain, and a new momentum optimization scheme is proposed to solve the variational problem. Length of group exponential path is also proposed as an alternative shape metric to geodesic distance, and pair-wise metrics among a population are computed through an approximation method via BCH formula which only needs registrations to a template. The proposed methods have been tested on both synthesized data and real database. Compared to non-stationary parameterization, this method can achieve comparable registration accuracy in significantly reduced time. Second order metric approximation by this method also improves significantly over first order, which can not be achieved by non-stationary parameterization. Correlation between the two shape metrics is also investigated, and their statistical power in clinical study compared.
Keywords
Computational anatomy Diffeomorphic metric mapping Stationary parameterization Landmark matching Metric approximationNotes
Acknowledgments
This work was partially supported by the National Key Basic Research and Development Program (973) (Grant No. 2011CB707800), the Strategic Priority Research Program of the Chinese Academy of Sciences (Grant No. XDB02030300), and the National Natural Science Foundation of China (Grant No. 91132301). We also thank Dr. Anqi Qiu for thoughtful discussions on LDDMM.
References
- Arsigny, V., Commowick, O., Pennec, X., & Ayache, N. (2006). A log-euclidean framework for statistics on diffeomorphisms. Medical Image Computing and Computer-Assisted Intervention, 9, 924–931.Google Scholar
- Ashburner, J. (2007). A fast diffeomorphic image registration algorithm. NeuroImage, 38, 95–113.CrossRefGoogle Scholar
- Ashburner, J., & Friston, K. J. (2011). Diffeomorphic registration using geodesic shooting and Gauss-Newton optimisation. NeuroImage, 55, 954–67.CrossRefGoogle Scholar
- Avants, B. B., Epstein, C. L., Grossman, M., & Gee, J. C. (2008). Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain. Medical Image Analysis, 12, 26–41.CrossRefGoogle Scholar
- Beg, M. F., & Khan, A. (2007). Symmetric data attachment terms for large deformation image registration. IEEE Transactions on Medical Imaging, 26, 1179–1189.CrossRefGoogle Scholar
- Beg, M. F., Miller, M. I., Trouve, A., & Younes, L. (2005). Computing large deformation metric mappings via geodesic flows of diffeomorphisms. International Journal of Computer Vision, 61, 139–157.CrossRefGoogle Scholar
- Cox, T. F., & Cox, M. A. A. (2001). Multidimensional scaling (2nd ed.). Boca Raton: Chapman & Hall/CRC.Google Scholar
- Davis, B. C., Fletcher, P. T., Bullitt, E., & Joshi, S. (2010). Population shape regression from random design data. International Journal of Computer Vision, 90, 255–266.CrossRefGoogle Scholar
- Du, J., Goh, A., & Qiu, A. (2011). Large deformation diffeomorphic metric mapping of orientation distribution functions. Information Processing Medical Imaging, 22, 448–462.Google Scholar
- Dupuis, P., Grenander, U., & Miller, M. I. (1998). Variational problems on flows of diffeomorphisms for image matching. Quarterly of Applied Mathematics, 56, 587–600.MATHMathSciNetGoogle Scholar
- Glaunes, J., Qiu, A. Q., Miller, M. I., & Younes, L. (2008). Large deformation diffeomorphic metric curve mapping. International Journal of Computer Vision, 80, 317–336.CrossRefGoogle Scholar
- Grabowski, J. (1988). Free subgroups of diffeomorphism-groups. Fundamenta Mathematicae, 131, 103–121.MATHMathSciNetGoogle Scholar
- Grenander, U., & Miller, M. I. (1998). Computational anatomy: An emerging discipline. Quarterly of Applied Mathematics, 56, 617–694.MATHMathSciNetGoogle Scholar
- Grenander, U. (1993). General pattern theory : A mathematical study of regular structures Oxford mathematical monographs. Oxford University Press: Clarendon.Google Scholar
- Hernandez, M., Bossa, M. N., & Olmos, S. (2009). Registration of anatomical images using paths of diffeomorphisms parameterized with stationary vector field flows. International Journal of Computer Vision, 85, 291–306.CrossRefGoogle Scholar
- Holm, D. D., Ratnanather, J. T., Trouve, A., & Younes, L. (2004). Soliton dynamics in computational anatomy. NeuroImage, 23, S170–S178.Google Scholar
- Joshi, S. C., & Miller, M. I. (2000). Landmark matching via large deformation diffeomorphisms. Information Processing Medical Imaging, 9, 1357–1370.MATHMathSciNetGoogle Scholar
- Lorenzi, M., & Pennec, X. (2013). Geodesics, parallel transport & One-parameter subgroups for diffeomorphic image registration. International Journal of Computer Vision, 105, 111–127.MATHMathSciNetCrossRefGoogle Scholar
- Marcus, D. S., Wang, T. H., Parker, J., Csernansky, J. G., Morris, J. C., & Buckner, R. L. (2007). Open access series of imaging studies (oasis): Cross-sectional MRI data in young, middle aged, nondemented, and demented older adults. Journal of Cognitive Neuroscience, 19, 1498–1507.CrossRefGoogle Scholar
- Miller, M. I., Priebe, C. E., Qiu, A., Fischl, B., Kolasny, A., Brown, T., et al. (2009). Collaborative computational anatomy: An MRI morphometry study of the human brain via diffeomorphic metric mapping. Human Brain Mapping, 30, 2132–2141.CrossRefGoogle Scholar
- Miller, M. I., Trouve, A., & Younes, L. (2002). On the metrics and Euler-Lagrange equations of computational anatomy. Annual Review of Biomedical Engineering, 4, 375–405.CrossRefGoogle Scholar
- Miller, M. I., Trouve, A., & Younes, L. (2006). Geodesic shooting for computational anatomy. Journal of Mathematical Imaging and Vision, 24, 209–228.MathSciNetCrossRefGoogle Scholar
- Nocedal, J., & Wright, S. J. (1999). Numerical optimization springer series in operations research. New York: Springer.Google Scholar
- Pennec, X. (2009). Statistical computing on manifolds: From riemannian geometry to computational anatomy. Emerging Trends in Visual Computing, 5416, 347–386.CrossRefGoogle Scholar
- Qiu, A., & Miller, M. I. (2007). Cortical hemisphere registration via large deformation diffeomorphic metric curve mapping. Medical Image Computing and Computer-Assisted Intervention, 10, 186–193.Google Scholar
- Qiu, A., & Miller, M. I. (2008). Multi-structure network shape analysis via normal surface momentum maps. NeuroImage, 42, 1430–8.CrossRefGoogle Scholar
- Raffelt, D., Tournier, J. D., Fripp, J., Crozier, S., Connelly, A., & Salvado, O. (2011). Symmetric diffeomorphic registration of fibre orientation distributions. NeuroImage, 56, 1171–80.CrossRefGoogle Scholar
- Roweis, S. T., & Saul, L. K. (2000). Nonlinear dimensionality reduction by locally linear embedding. Science, 290, 2323–2326.CrossRefGoogle Scholar
- Tenenbaum, J. B., de Silva, V., & Langford, J. C. (2000). A global geometric framework for nonlinear dimensionality reduction. Science, 290, 2319–2323.Google Scholar
- Thompson, P., & Toga, A. W. (1996). A surface-based technique for warping three-dimensional images of the brain. IEEE Transactions on Medical Imaging, 15, 402–417.CrossRefGoogle Scholar
- Trouvé, A. (1995). An infinite dimensional group approach for physics based model in pattern recognition. Technical report (electronically available at http://www.cis.jhu.edu).
- Trouvé, A. (1998). Diffeomorphisms groups and pattern matching in image analysis. International Journal of Computer Vision, 28, 213–221.CrossRefGoogle Scholar
- Vaillant, M., & Glaunes, J. (2005). Surface matching via currents. Information Processing in Medical Imaging, Proceedings, 3565, 381–392.CrossRefGoogle Scholar
- Vaillant, M., Miller, M. I., Younes, L., & Trouve, A. (2004). Statistics on diffeomorphisms via tangent space representations. NeuroImage, 23(Suppl 1), S161–9.CrossRefGoogle Scholar
- Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2008). Symmetric log-domain diffeomorphic registration: A demons-based approach. Medical Image Computing and Computer-Assisted Intervention, 11, 754–761.Google Scholar
- Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2009). Diffeomorphic demons: Efficient non-parametric image registration. NeuroImage, 45, S61–72.CrossRefGoogle Scholar
- Vialard, F. X., Risser, L., Rueckert, D., & Cotter, C. J. (2012). Diffeomorphic 3d image registration via geodesic shooting using an efficient adjoint calculation. International Journal of Computer Vision, 97, 229–241.MATHMathSciNetCrossRefGoogle Scholar
- Wang, L., Beg, F., Ratnanather, T., Ceritoglu, C., Younes, L., Morris, J. C., et al. (2007). Large deformation diffeomorphism and momentum based hippocampal shape discrimination in dementia of the alzheimer type. IEEE Transactions on Medical Imaging, 26, 462–470.Google Scholar
- Wojtynski, W. (1994). One-parameter subgroups and the b-c-h formula. Studia Mathematica, 111, 163–185.MATHMathSciNetGoogle Scholar
- Yang, C. J., Duraiswami, R., Gumerov, N. A., & Davis, L. (2003). Improved fast gauss transform and efficient kernel density estimation. Proceedings of the Ninth IEEE International Conference on Computer Vision, 2, 464–471.Google Scholar
- Yang, X. F., Goh, A., & Qiu, A. Q. (2011a). Approximations of the diffeomorphic metric and their applications in shape learning. Information Processing in Medical Imaging, 6801, 257–270.Google Scholar
- Yang, X. F., Goh, A., & Qiu, A. Q. (2011b). Locally linear diffeomorphic metric embedding (lldme) for surface-based anatomical shape modeling. NeuroImage, 56, 149–161.CrossRefGoogle Scholar
- Younes, L. (2007). Jacobi fields in groups of diffeomorphisms and applications. Quarterly of Applied Mathematics, 65, 113–134.MATHMathSciNetCrossRefGoogle Scholar
- Younes, L. (2010). Shapes and diffeomorphisms. Shapes and Diffeomorphisms, 171, 1–434.MathSciNetCrossRefGoogle Scholar