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Systematic Parasitology

, Volume 93, Issue 3, pp 295–306 | Cite as

Molecular approaches to trematode systematics: ‘best practice’ and implications for future study

  • Isabel Blasco-Costa
  • Scott C. Cutmore
  • Terrence L. Miller
  • Matthew J. Nolan
Article

Abstract

To date, morphological analysis has been the cornerstone to trematode systematics. However, since the late-1980s we have seen an increased integration of genetic data to overcome problems encountered when morphological data are considered in isolation. Here, we provide advice regarding the ‘best molecular practice’ for trematode taxonomy and systematic studies, in an attempt to help unify the field and provide a solid foundation to underpin future work. Emphasis is placed on defining the study goals and recommendations are made regarding sample preservation, extraction methods, and the submission of molecular vouchers. We advocate generating sequence data from all parasite species/host species/geographic location combinations and stress the importance of selecting two independently evolving loci (one ribosomal and one mitochondrial marker). We recommend that loci should be chosen to provide genetic variation suitable to address the question at hand and for which sufficient ‘useful’ comparative sequence data already exist. Quality control of the molecular data via using proof-reading Taq polymerase, sequencing PCR amplicons using both forward and reverse primers, ensuring that a minimum of 85% overlap exists when constructing consensus sequences, and checking electropherograms by eye is stressed. We advise that all genetic results are best interpreted using a holistic biological approach, which considers morphology, host identity, collection locality, and ecology. Finally, we consider what advances next-generation sequencing holds for trematode taxonomy and systematics.

Keywords

Mitochondrial Gene Species Concept Polymerase Chain Reaction Amplicon Trematode Species Biological Species Concept 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

Notes

Acknowledgements

We thank Associate Professor Thomas Cribb for organising the workshop ‘The biodiversity of trematodes of fishes’ at the 9th International Symposium on Fish Parasites and sharing his opinion on this topic. We are also grateful to two anonymous reviewers and the Editor-in-Chief for their very constructive comments.

Compliance with ethical standards

Conflict of interest

The authors declare that they have no conflict of interest.

Ethical approval

This article does not contain any studies with animals performed by any of the authors.

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Copyright information

© Springer Science+Business Media Dordrecht 2016

Authors and Affiliations

  • Isabel Blasco-Costa
    • 1
  • Scott C. Cutmore
    • 2
  • Terrence L. Miller
    • 3
    • 4
  • Matthew J. Nolan
    • 5
  1. 1.Department of InvertebratesNatural History Museum of GenevaGenevaSwitzerland
  2. 2.School of Biological SciencesThe University of QueenslandSt LuciaAustralia
  3. 3.Department of FisheriesFish Health LaboratorySouth PerthAustralia
  4. 4.Centre for Sustainable Tropical Fisheries and Aquaculture, College of Marine and Environmental SciencesJames Cook UniversityCairnsAustralia
  5. 5.Department of Pathology and Pathogen Biology, Royal Veterinary CollegeUniversity of LondonHatfieldUK

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