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Light-dependent isomeric effects of polycyclic aromatic hydrocarbons on the predication of DNA cleavage factor efficiency

  • Shawnta D. Woods
  • Wojciech Kolodziejczyk
  • Karina Kapusta
  • Jerzy Leszczynski
  • Glake A. Hill
Original Research
  • 17 Downloads

Abstract

PAHs, short for polycyclic aromatic hydrocarbons, are a ubiquitous group of chemically related, environmentally persistent organic compounds having diverse structures and varied toxicity. They have been shown to cause mutagenic and carcinogenic effects on organisms and are quite immunosuppressive. Time-dependent density functional theory (TD-DFT) offers a practical means of understanding the behavior of excitation energies for PAHs. Here, we examined the performance of the long-range corrected Coulomb-attenuating functional (CAM-B3LYP) in relation to four different basis sets, determining which basis set compliments the functional better in identifying the most reactive atomic site on six isomeric PAH compounds. Condensed Fukui function indices were used to compare the performance of applied basis sets in identifying the most reactive atomic site on six isomeric PAHs compounds, assessing which basis set would be more appropriate in determining the site where free-radical formation would occur after light irradiation. Dunning’s correlation consistent triple-zeta (cc-pVTZ) basis set was determined to have the best PAH characterization performance, concluding the need for application of a higher-level basis set with the long-range corrected Coulomb-attenuating functional. Although each compound was a structural isomer of the other, the reactive atomic sites varied for each molecule with the use of an applied basis set. It was concluded that structural shape has some influence on the calculation of PAH characteristics. Lastly, in order to predict DNA single-stranded cleavage factor for the compounds proposed here, we have used the quantitative structure-activity relationship (QSAR). The cleavage factor values for the set of aromatic molecules with similar structures have been collected from the literature for a total number of 22 compounds.

Keywords

QSAR PAH, Cleavage factor DNA Polycyclic aromatic hydrocarbons 

Notes

Acknowledgments

The authors wish to thank the funding source for this research PREM-DMR-I205194 and NSF CREST-HRD-1547754 along with the Wroclaw Supercomputing and Networking Center and the Mississippi Center for Supercomputing Research, both for their generous allotment of computer time.

Compliance with ethical standards

Conflict of interest

The authors declare that they have no conflict of interest.

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Copyright information

© Springer Science+Business Media, LLC, part of Springer Nature 2018

Authors and Affiliations

  1. 1.Interdisciplinary Center for Nanotoxicity, Department of Chemistry and BiochemistryJackson State UniversityJacksonUSA

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