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Russian Journal of Genetics

, Volume 41, Issue 8, pp 907–912 | Cite as

Population Structure of the Baikalian Amphipod Gmelinoides fasciatus (Stebbing)

  • G. V. Gomanenko
  • R. M. Kamaltynov
  • Zh. V. Kuzmenkova
  • K. Berenos
  • D. Yu. Sherbakov
Plant Genetics

Abstract

Using the data on 71 individual sequences of the gene for the mitochondrial cytochrome-c-oxidase subunit one, molecular and phylogenetic characterization of the Baikalian amphipod, Gmelinoides fasciatus (Crustacea, Amphipoda), was performed. Interspecific polymorphism was demonstrated. Four main amphipod populations, Southeastern, Southwestern, Northern, and Central, were distinguished. A low level of genetic diversity typical of Southwestern population was revealed. For its explanation, the bottleneck hypothesis was proposed.

Keywords

Genetic Diversity Population Structure Individual Sequence Phylogenetic Characterization Amphipod Population 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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REFERENCES

  1. 1.
    Mats, V.D., Ufimtsev, G.F., Mandel’baum, M.M., et al., Kainozoi Baikal’skoi riftovoi vpadiny: Stroenie i geologicheskaya istoriya (The Cainozoe of the Baikal Rift Valley: Structure and Geological History), Novosibirsk: Nauka, 2001.Google Scholar
  2. 2.
    Kamaltynov, R.M., Amphipoda (Gammaroidea), Annotirovannyi spisok fauny ozera Baikal i ego vodosbornogo basseina (Annotated Registry of the Fauna of the Baikal Lake and Its Basin), vol. 1: Ozero Baikal (Baikal Lake), Timoshkin, O.A., Ed., Novosibirsk: Nauka, 2001, pp. 572–832.Google Scholar
  3. 3.
    Stebbing, T.R.R., Amphipoda from the Copenhagen Museum and Other Sources: Part 2, Trans. Linn. Soc. London, B, 1899, vol. 7, pp. 395–432.Google Scholar
  4. 4.
    Matafonov, D.V., Comparative Ecology of Amphipods Gmelinoides fasciatus (Stebbing, 1899) and Gammarus lacustris (Sars, 1863) from the Ivano-Arakhleiskie Lakes, Cand. Sci. (Biol.) Dissertation, Ulan-Ude: Chitinsk. Inst. of Natural Resources, 2003.Google Scholar
  5. 5.
    Mel’nik, M.M. and Mikhailov, A.E., Specific Biological Features of Amphipod Gmelinoides fasciatus (Stebb.) from the Pskovsko-Chudskoe Lake, VIII S”ezd Gidrobiologicheskogo Obshchestva RAN: Tezisy dokladov (Proc. VIII Meet. Hydrobiological Soc. of the Russian Academy of Sciences), Kaliningrad: KGTU, 2001, vol. 2, p. 85.Google Scholar
  6. 6.
    Matafonov, P.V., Matafonov, D.V., and Kuklin, A.P., Zoobenthic Community of Alga Sladorhora aegagrorila in the Lake Arakhlei, Ozera kholodnykh regionov: Materialy mezhdunarodnoi konferentsii (Lakes of Cold Regions: Proc. Int. Conf.), part 2, Yakutsk, 2000, pp. 127–136.Google Scholar
  7. 7.
    Bekman, M.Yu., Ecology and Production of Micruropus possolskii Sow. and Gmelinoides fasciatus Stebb., Tr. Limnol. Inst., 1962, vol. 2, pp. 141–155.Google Scholar
  8. 8.
    Beman, M.Yu. and Bazikalova, A.Ya., Biology and Productive Potential of Some Baikal and Siberian Amphipods, Tr. Probl. Tematichesk. Soveshch. ZIN, 1951, no. 1, pp. 61–67.Google Scholar
  9. 9.
    Panov, V.E., Timm, T., and Timm, H., Current Status of an Introduced Baikalian Amphipod, Gmelinoides fasciatus (Stebbing), in the Littoral Communities of Lake Peipsi, Proc. Estonian Acad. Sci. Biol. Ecol., 2000, vol. 49, no.1, pp. 91–105.Google Scholar
  10. 10.
    Mordukhai-Boltovskoi, F.D. and Chirkova, Z.N., On the Distribution of Baikal Amphipod Gmelinoides fasciatus (Stebbing) in the Gor’kovskoe Water Reserve, Biol. Vnutr. Vod: Inf. Byul. Akad. Nauk SSSR, 1971, no. 9, pp. 38–42.Google Scholar
  11. 11.
    Bazikalova, A.Ya., Amphipods of the Baikal Lake, Tr. Baikal’sk. Limnol. St., 1945, vol. 11, pp. 3–440.Google Scholar
  12. 12.
    Doyle, J.J. and Dickson, E., Preservation of Plant Samples for DNA Restriction Endonuclease Analysis, Taxon, 1987, vol. 36, pp. 715–722.Google Scholar
  13. 13.
    Folmer, O., Black, M., Hoeh, W., et al., DNA Primer for Amplification of Mitochondrial Cytochrome C Oxidase Subunit I from Diverse Metazoan Invertebrates, Mol. Mar. Biol. Biotech., 1994, vol. 3, pp. 294–299.Google Scholar
  14. 14.
    Sambrook, J., Fritsch, E.F., and Maniatis, T., Molecular Cloning: A Laboratory Manual, Cold Spring Harbor, New York: Cold Spring Harbor Lab., 1967.Google Scholar
  15. 15.
    Tom Hall Bio Edit Sequence Alignment Editor, Version 5.0.9, Department of Microbiology, North Carolina State University.Google Scholar
  16. 16.
    Kumar, S., Tamura, K., and Nei, M., MEGA: Molecular Evolution Genetic Analysis, Version 1.0, Pennsylvania State Univ., 1993.Google Scholar
  17. 17.
    Tajima, F., Statistical Method for Testing the Neutral Mutation Hypothesis by DNA Polymorphism, Genetics, 1989, vol. 123, pp. 585–595.PubMedGoogle Scholar
  18. 18.
    Felsenstein, J., PHYLIP (Phylogeny Inference Package), Version 3.61, Seattle: Univ. of Washington, 1993.Google Scholar
  19. 19.
    Schneider, S., Roessli, D., and Excoffier, L., ARLEQUIN (A Software for Population Genetics Data Analysis), Version 2.000, Genetics and Biometry Laboratory, Dept. of Anthropology and Ecology, Univ. of Geneva, 2000.Google Scholar
  20. 20.
    Weir, B.S. and Cockerham, C.C., Estimating F-Statistics for the Analysis of Population Structure, Evolution, 1984, vol. 38, pp. 1358–1370.Google Scholar
  21. 21.
    Excoffier, L., Smouse, P., and Quattro, J., Analysis of Molecular Variance Inferred from Metric Distances among DNA Haplotypes: Application to Human Mitochondrial DNA Restriction Data, Genetics, 1992, vol. 136, pp. 343–359.Google Scholar
  22. 22.
    Tajima, F., Evolutionary Relationship of DNA Sequences in Finite Population, Genetics, 1983, vol. 105, pp. 437–460.PubMedGoogle Scholar
  23. 23.
    Tajima, F., Measurement of DNA Polymorphism, Mechanisms of Molecular Evolution: Introduction to Molecular Paleopopulation Biology, Takahata, N. and Clark, A.G., Eds., Tokyo: Japan Sci. Soc., Sinauer Associates, 1993, pp. 37–59.Google Scholar
  24. 24.
    Nei, M., Molecular Evolutionary Genetics, New York: Columbia Univ. Press, 1987.Google Scholar
  25. 25.
    Chakraborty, R. and Weiss, K.M., Genetic Variation of the Mitochondrial DNA Genome in American Indians at Mutation-Drift Equilibrium, Am. J. Hum. Genet., 1991, vol. 47, pp. 87–94.Google Scholar
  26. 26.
    Rogers, A.R. and Harpending, H., Population Growth Makes Waves in the Distribution of Pairwise Genetic Differences, Mol. Biol. Evol., 1992, vol. 9, pp. 552–569.PubMedGoogle Scholar
  27. 27.
    Lut, B.F., Geomorphology of the Baikal Region and the Deep of the Baikal Lake, Tr. LIN Sib. Otd. Akad. Nauk SSSR, 1978.Google Scholar

Copyright information

© MAIK “Nauka/Interperiodica” 2005

Authors and Affiliations

  • G. V. Gomanenko
    • 1
  • R. M. Kamaltynov
    • 1
  • Zh. V. Kuzmenkova
    • 1
  • K. Berenos
    • 2
  • D. Yu. Sherbakov
    • 1
  1. 1.Limnological InstituteRussian Academy of SciencesIrkutskRussia
  2. 2.Amsterdam UniversityAmsterdamthe Netherlands

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