Identification and Characterization of a Multigene Family Encoding Germin-Like Proteins in Cultivated Peanut (Arachis hypogaea L.)
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Abstract
Germin-like proteins (GLPs) play diversified roles in plant development and defense response. Here, we identified 36 expressed sequence tags (ESTs) encoding GLPs from peanut (Arachis hypogaea L.). After assembly, these ESTs were integrated into eight unigenes named AhGLP1 to AhGLP8, of which, three (AhGLP1-3) were comprised 14, ten, and seven EST clones, respectively, whereas the remaining ones were associated with one single clone. The length of the deduced amino acid (AA) residues ranged from 208 to 223 AAs except for AhGLP6 and AhGLP8, which were incomplete at the carboxyl terminus. All of the AhGLPs contained a possible N-terminal signal peptide that was 17 to 24 residues in length excluding AhGLP7, where there is likely a non-cleavable amino terminus. Phylogenetic analysis showed that these AhGLPs were classified into three subfamilies. Southern blot analysis indicated that AhGLP1 and AhGLP2 likely have multiple copies in the peanut genome. The recombinant mature AhGLP1 and AhGLP2 proteins were successfully expressed in Escherichia coli. The purified AhGLP2 has superoxide dismutase (SOD) activity in enzymatic assay, but not oxalate oxidase activity. The SOD activity of AhGLP2 was stable up to 70°C and resistant to hydrogen peroxide, suggesting that AhGLP2 might be a manganese-containing SOD. Furthermore, AhGLP2 could confer E. coli resistance to oxidative damage caused by paraquat, suggesting that the AhGLP2 likely protects peanut plants from reactive oxygen metabolites. Thus, information provided in this study indicates the diverse nature of the peanut GLP family and suggests that some of AhGLPs might be involved in plant defense response.
Keywords
Peanut GLP family Superoxide dismutase Oxalate oxidase Disease resistanceAbbreviations
- GLP
Germin-like protein
- SOD
Superoxide dismutase
- OXO
Oxalate oxidase
- RFLP
Restriction fragment length polymorphism
Notes
Acknowledgements
The technical assistance of Dr. Zhangying Wang, William Wilson, Jake Fountain, and Thomas An in the laboratory and fields are gratefully acknowledged. This research was supported partially by a grant from China National Natural Science Foundation (No. 30971819) and by Scientific Cooperation Research Program of US Department of Agriculture-Foreign Agricultural Service between US and China, and The Peanut Foundation, and The Georgia Peanut Commission. Mention of trade names or commercial products in this publication is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the US Department of Agriculture.
References
- Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB et al (2009) Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol Biol 69(1–2):179–194PubMedCrossRefGoogle Scholar
- Baneyx F (1999) Recombinant protein expression in Escherichia coli. Curr Opin Biotechnol 10(5):411–421PubMedCrossRefGoogle Scholar
- Bernier F, Berna A (2001) Germins and germin-like proteins: plant do-all proteins. But what do they do exactly. Plant Physiol Biochem 39:545–554CrossRefGoogle Scholar
- Bessette PH, Aslund F, Beckwith J, Georgiou G (1999) Efficient folding of proteins with multiple disulfide bonds in the Escherichia coli cytoplasm. Proc Natl Acad Sci USA 96(24):13703–13708PubMedCrossRefGoogle Scholar
- Bhattacharya J, GhoshDastidar K, Chatterjee A, Majee M, Majumder AL (2004) Synechocystis Fe superoxide dismutase gene confers oxidative stress tolerance to Escherichia coli. Biochem Biophys Res Commun 316(2):540–544PubMedCrossRefGoogle Scholar
- Bowler C, Montagu MV, Inze D (1992) Superoxide dismutase and stress tolerance. Annu Rev Plant Physiol Plant Mol Biol 43:83–116CrossRefGoogle Scholar
- Caliskan M, Turet M, Cuming AC (2004) Formation of wheat (Triticum aestivum L.) embryogenic callus involves peroxide-generating germin-like oxalate oxidase. Planta 219(1):132–140PubMedCrossRefGoogle Scholar
- Carter C, Thornburg RW (1999) Germin-like proteins: structure, phylogeny, and function. J Plant Biol 42(2):97–108CrossRefGoogle Scholar
- Carter C, Thornburg RW (2000) Tobacco nectarin I. Purification and characterization as a germin-like, manganese superoxide dismutase implicated in the defense of floral reproductive tissues. J Biol Chem 275(47):36726–36733PubMedCrossRefGoogle Scholar
- Carter C, Graham RA, Thornburg RW (1998) Arabidopsis thaliana contains a large family of germin-like proteins: characterization of cDNA and genomic sequences encoding 12 unique family members. Plant Mol Biol 38(6):929–943PubMedCrossRefGoogle Scholar
- Cassland P, Larsson S, Nilvebrant NO, Jonsson LJ (2004) Heterologous expression of barley and wheat oxalate oxidase in an E. coli trxB gor double mutant. J Biotechnol 109(1–2):53–62PubMedCrossRefGoogle Scholar
- Christensen AB, Thordal-Christensen H, Zimmermann G, Gjetting T, Lyngkjaer MF, Dudler R, Schweizer P (2004) The germin-like protein GLP4 exhibits superoxide dismutase activity and is an important component of quantitative resistance in wheat and barley. Mol Plant Microbe Interact 17(1):109–117PubMedCrossRefGoogle Scholar
- Davidson RM, Reeves PA, Manosalva PM, Leach JE (2009) Germins: A diverse protein family important for crop improvement. Plant Sci 177(6):499–510CrossRefGoogle Scholar
- Dumas B, Sailland A, Cheviet JP, Freyssinet G, Pallett K (1993) Identification of barley oxalate oxidase as a germin-like protein. C R Acad Sci III 316(8):793–798PubMedGoogle Scholar
- Dunwell JM, Gibbings JG, Mahmood T, Naqvi SMS (2008) Germin and germin-like proteins: evolution, structure, and function. Crit Rev Plant Sci 27(5):342–375CrossRefGoogle Scholar
- Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8(3):175–185PubMedGoogle Scholar
- Geller BL, Winge DR (1983) A method for distinguishing Cu, Zn- and Mn-containing superoxide dismutases. Anal Biochem 128(1):86–92PubMedCrossRefGoogle Scholar
- Godfrey D, Able AJ, Dry IB (2007) Induction of a grapevine germin-like protein (VvGLP3) gene is closely linked to the site of Erysiphe necator infection: a possible role in defense. Mol Plant Microbe Interact 20(9):1112–1125PubMedCrossRefGoogle Scholar
- Gucciardo S, Wisniewski JP, Brewin NJ, Bornemann S (2007) A germin-like protein with superoxide dismutase activity in pea nodules with high protein sequence identity to a putative rhicadhesin receptor. J Exp Bot 58(5):1161–1171PubMedCrossRefGoogle Scholar
- Guo B, Chen X, Dang P, Scully BT, Liang X, Holbrook CC, Yu J, Culbreath AK (2008) Peanut gene expression profiling in developing seeds at different reproduction stages during Aspergillus parasiticus infection. BMC Dev Biol 8:12PubMedCrossRefGoogle Scholar
- Guo B, Chen X, Hong Y, Liang X, Dang P, Brenneman T, Holbrook C, Culbreath A (2009) Analysis of gene expression profiles in leaf tissues of cultivated peanuts and development of EST-SSR markers and gene discovery. Int J Plant Genomics 2009:715605PubMedGoogle Scholar
- Gupta AS, Heinen JL, Holaday AS, Burke JJ, Allen RD (1993) Increased resistance to oxidative stress in transgenic plants that overexpress chloroplastic Cu/Zn superoxide dismutase. Proc Natl Acad Sci USA 90(4):1629–1633PubMedCrossRefGoogle Scholar
- Hassan HM, Fridovich I (1978) Superoxide radical and the oxygen enhancement of the toxicity of paraquat in Escherichia coli. J Biol Chem 253(22):8143–8148PubMedGoogle Scholar
- Himmelbach A, Liu L, Zierold U, Altschmied L, Maucher H, Beier F, Muller D, Hensel G, Heise A, Schutzendubel A et al (2010) Promoters of the barley germin-like GER4 gene cluster enable strong transgene expression in response to pathogen attack. Plant Cell 22(3):937–952PubMedCrossRefGoogle Scholar
- Hu X, Bidney DL, Yalpani N, Duvick JP, Crasta O, Folkerts O, Lu G (2003) Overexpression of a gene encoding hydrogen peroxide-generating oxalate oxidase evokes defense responses in sunflower. Plant Physiol 133(1):170–181PubMedCrossRefGoogle Scholar
- Hurkman WJ, Tanaka CK (1996a) Effect of salt stress on germin gene expression in barley roots. Plant Physiol 110(3):971–977PubMedGoogle Scholar
- Hurkman WJ, Tanaka CK (1996b) Germin gene expression is induced in wheat leaves by powdery mildew infection. Plant Physiol 111(3):735–739PubMedGoogle Scholar
- Jensen-Jarolim E, Schmid B, Bernier F, Berna A, Kinaciyan T, Focke M, Ebner C, Scheiner O, Boltz-Nitulescu G (2002) Allergologic exploration of germins and germin-like proteins, a new class of plant allergens. Allergy 57(9):805–810PubMedCrossRefGoogle Scholar
- Khuri S, Bakker FT, Dunwell JM (2001) Phylogeny, function, and evolution of the cupins, a structurally conserved, functionally diverse superfamily of proteins. Mol Biol Evol 18(4):593–605PubMedGoogle Scholar
- Kim HJ, Triplett BA (2004) Cotton fiber germin-like protein. I. Molecular cloning and gene expression. Planta 218(4):516–524PubMedCrossRefGoogle Scholar
- Laker MF, Hofmann AF, Meeuse BJ (1980) Spectrophotometric determination of urinary oxalate with oxalate oxidase prepared from moss. Clin Chem 26(7):827–830PubMedGoogle Scholar
- Lane BG (1991) Cellular desiccation and hydration: developmentally regulated proteins, and the maturation and germination of seed embryos. FASEB J 5(14):2893–2901PubMedGoogle Scholar
- Lane BG (1994) Oxalate, germin, and the extracellular matrix of higher plants. FASEB J 8(3):294–301PubMedGoogle Scholar
- Lane BG (2002) Oxalate, germins, and higher-plant pathogens. IUBMB Life 53(2):67–75PubMedCrossRefGoogle Scholar
- Lane BG, Bernier F, Dratewka-Kos E, Shafai R, Kennedy TD, Pyne C, Munro JR, Vaughan T, Walters D, Altomare F (1991) Homologies between members of the germin gene family in hexaploid wheat and similarities between these wheat germins and certain Physarum spherulins. J Biol Chem 266:10461–10469PubMedGoogle Scholar
- Lane BG, Cuming AC, Fregeau J, Carpita NC, Hurkman WJ, Bernier F, Dratewka-Kos E, Kennedy TD (1992) Germin isoforms are discrete temporal markers of wheat development. Pseudogermin is a uniquely thermostable water-soluble oligomeric protein in ungerminated embryos and like germin in germinated embryos, it is incorporated into cell walls. Eur J Biochem 209(3):961–969PubMedCrossRefGoogle Scholar
- Lane BG, Dunwell JM, Ray JA, Schmitt MR, Cuming AC (1993) Germin, a protein marker of early plant development, is an oxalate oxidase. J Biol Chem 268(17):12239–12242PubMedGoogle Scholar
- Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R et al (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23(21):2947–2948PubMedCrossRefGoogle Scholar
- Lerouge P, Cabanes-Macheteau M, Rayon C, Fischette-Laine AC, Gomord V, Faye L (1998) N-glycoprotein biosynthesis in plants: recent developments and future trends. Plant Mol Biol 38(1–2):31–48PubMedCrossRefGoogle Scholar
- Li JR, Yu P (2007) Expression of Cu, Zn-superoxide dismutase gene from Saccharomyces cerevisiae in Pichia pastoris and its resistance to oxidative stress. Appl Biochem Biotechnol 136(1):127–139PubMedCrossRefGoogle Scholar
- Livingstone DM, Hampton JL, Phipps PM, Grabau EA (2005) Enhancing resistance to Sclerotinia minor in peanut by expressing a barley oxalate oxidase gene. Plant Physiol 137(4):1354–1362PubMedCrossRefGoogle Scholar
- Manosalva PM, Davidson RM, Liu B, Zhu X, Hulbert SH, Leung H, Leach JE (2009) A germin-like protein gene family functions as a complex quantitative trait locus conferring broad-spectrum disease resistance in rice. Plant Physiol 149(1):286–296PubMedCrossRefGoogle Scholar
- Matamoros MA, Dalton DA, Ramos J, Clemente MR, Rubio MC, Becana M (2003) Biochemistry and molecular biology of antioxidants in the rhizobia-legume symbiosis. Plant Physiol 133(2):499–509PubMedCrossRefGoogle Scholar
- Mathieu M, Lelu-Walter MA, Blervacq AS, David H, Hawkins S, Neutelings G (2006) Germin-like genes are expressed during somatic embryogenesis and early development of conifers. Plant Mol Biol 61(4–5):615–627PubMedCrossRefGoogle Scholar
- Membre N, Bernier F (1998) The rice genome expresses at least six different genes for oxalate oxidase/germin-like proteins. Plant Physiol 116(2):868Google Scholar
- Membre N, Berna A, Neutelings G, David A, David H, Staiger D, Saez Vasquez J, Raynal M, Delseny M, Bernier F (1997) cDNA sequence, genomic organization and differential expression of three Arabidopsis genes for germin/oxalate oxidase-like proteins. Plant Mol Biol 35(4):459–469PubMedCrossRefGoogle Scholar
- Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8(19):4321–4325PubMedCrossRefGoogle Scholar
- Nakata M, Watanabe Y, Sakurai Y, Hashimoto Y, Matsuzaki M, Takahashi Y, Satoh T (2004) Germin-like protein gene family of a moss, Physcomitrella patens, phylogenetically falls into two characteristic new clades. Plant Mol Biol 56(3):381–395PubMedCrossRefGoogle Scholar
- Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A et al (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457(7229):551–556PubMedCrossRefGoogle Scholar
- Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, White J, Cheung F, Parvizi B et al (2003) TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19(5):651–652PubMedCrossRefGoogle Scholar
- Prinz WA, Aslund F, Holmgren A, Beckwith J (1997) The role of the thioredoxin and glutaredoxin pathways in reducing protein disulfide bonds in the Escherichia coli cytoplasm. J Biol Chem 272(25):15661–15667PubMedCrossRefGoogle Scholar
- Regelsberger G, Atzenhofer W, Ruker F, Peschek GA, Jakopitsch C, Paumann M, Furtmuller PG, Obinger C (2002) Biochemical characterization of a membrane-bound manganese-containing superoxide dismutase from the cyanobacterium Anabaena PCC 7120. J Biol Chem 277(46):43615–43622PubMedCrossRefGoogle Scholar
- Rodriguez-Lopez M, Baroja-Fernandez E, Zandueta-Criado A, Moreno-Bruna B, Munoz FJ, Akazawa T, Pozueta-Romero J (2001) Two isoforms of a nucleotide-sugar pyrophosphatase/phosphodiesterase from barley leaves (Hordeum vulgare L.) are distinct oligomers of HvGLP1, a germin-like protein. FEBS Lett 490(1–2):44–48PubMedCrossRefGoogle Scholar
- Rollins JA (2003) The Sclerotinia sclerotiorum pac1 gene is required for sclerotial development and virulence. Mol Plant Microbe Interact 16(9):785–795PubMedCrossRefGoogle Scholar
- Rotthues A, Kappler J, Lichtfuss A, Kloos DU, Stahl DJ, Hehl R (2008) Post-harvest regulated gene expression and splicing efficiency in storage roots of sugar beet (Beta vulgaris L.). Planta 227(6):1321–1332PubMedCrossRefGoogle Scholar
- Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4(4):406–425PubMedGoogle Scholar
- Segarra CI, Casalongue CA, Pinedo ML, Ronchi VP, Conde RD (2003) A germin-like protein of wheat leaf apoplast inhibits serine proteases. J Exp Bot 54(386):1335–1341PubMedCrossRefGoogle Scholar
- Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24(8):1596–1599PubMedCrossRefGoogle Scholar
- Wei Y, Zhang Z, Andersen CH, Schmelzer E, Gregersen PL, Collinge DB, Smedegaard-Petersen V, Thordal-Christensen H (1998) An epidermis/papilla-specific oxalate oxidase-like protein in the defence response of barley attacked by the powdery mildew fungus. Plant Mol Biol 36(1):101–112PubMedCrossRefGoogle Scholar
- Whittaker MM, Whittaker JW (2002) Characterization of recombinant barley oxalate oxidase expressed by Pichia pastoris. J Biol Inorg Chem 7(1–2):136–145PubMedCrossRefGoogle Scholar
- Woo EJ, Dunwell JM, Goodenough PW, Marvier AC, Pickersgill RW (2000) Germin is a manganese containing homohexamer with oxalate oxidase and superoxide dismutase activities. Nat Struct Biol 7(11):1036–1040PubMedCrossRefGoogle Scholar
- Wu S, Druka A, Horvath H, Kleinhofs A, Kannangara G, Wettstein D (2000) Functional characterization of seed coat specific members of the barley germin gene family. Plant Physiol Biochem 38:1–14CrossRefGoogle Scholar
- Yamahara T, Shiono T, Suzuki T, Tanaka K, Takio S, Sato K, Yamazaki S, Satoh T (1999) Isolation of a germin-like protein with manganese superoxide dismutase activity from cells of a moss, Barbula unguiculata. J Biol Chem 274(47):33274–33278PubMedCrossRefGoogle Scholar
- Youn HD, Kim EJ, Roe JH, Hah YC, Kang SO (1996) A novel nickel-containing superoxide dismutase from Streptomyces spp. Biochem J 318(Pt 3):889–896PubMedGoogle Scholar
- Zhang Z, Collinge DB, Thordal-Christensen H (1995) Germin-like oxalate oxidase, a H2O2-producing enzyme, accumulates in barley attacked by the powdery mildew fungus. Plant J 8(1):139–145CrossRefGoogle Scholar
- Zimmermann G, Baumlein H, Mock HP, Himmelbach A, Schweizer P (2006) The multigene family encoding germin-like proteins of barley regulation and function in basal host resistance. Plant Physiol 142(1):181–192PubMedCrossRefGoogle Scholar