Plant Molecular Biology

, Volume 59, Issue 1, pp 53–62

The Oryza Map Alignment Project: The Golden Path to Unlocking the Genetic Potential of Wild Rice Species

  • Rod A. Wing
  • Jetty S. S. Ammiraju
  • Meizhong Luo
  • HyeRan Kim
  • Yeisoo Yu
  • Dave Kudrna
  • Jose L. Goicoechea
  • Wenming Wang
  • Will Nelson
  • Kiran Rao
  • Darshan Brar
  • Dave J. Mackill
  • Bin Han
  • Cari Soderlund
  • Lincoln Stein
  • Phillip SanMiguel
  • Scott Jackson
Article

Abstract

The wild species of the genus Oryza offer enormous potential to make a significant impact on agricultural productivity of the cultivated rice species Oryza sativa and Oryza glaberrima. To unlock the genetic potential of wild rice we have initiated a project entitled the ‘Oryza Map Alignment Project’ (OMAP) with the ultimate goal of constructing and aligning BAC/STC based physical maps of 11 wild and one cultivated rice species to the International Rice Genome Sequencing Project’s finished reference genome – O. sativa ssp. japonica c. v. Nipponbare. The 11 wild rice species comprise nine different genome types and include six diploid genomes (AA, BB, CC, EE, FF and GG) and four tetrapliod genomes (BBCC, CCDD, HHKK and HHJJ) with broad geographical distribution and ecological adaptation. In this paper we describe our strategy to construct robust physical maps of all 12 rice species with an emphasis on the AA diploid O. nivara – thought to be the progenitor of modern cultivated rice.

Keywords

BAC-end sequencing comparative genomics physical mapping rice wild species 

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Copyright information

© Springer 2005

Authors and Affiliations

  • Rod A. Wing
    • 1
  • Jetty S. S. Ammiraju
    • 1
  • Meizhong Luo
    • 1
  • HyeRan Kim
    • 1
  • Yeisoo Yu
    • 1
  • Dave Kudrna
    • 1
  • Jose L. Goicoechea
    • 1
  • Wenming Wang
    • 1
  • Will Nelson
    • 2
  • Kiran Rao
    • 2
  • Darshan Brar
    • 6
  • Dave J. Mackill
    • 6
  • Bin Han
    • 7
  • Cari Soderlund
    • 2
  • Lincoln Stein
    • 5
  • Phillip SanMiguel
    • 4
  • Scott Jackson
    • 3
  1. 1.Arizona Genomics InstituteThe University of ArizonaTucson
  2. 2.Arizona Genomics Computational LaboratoryThe University of ArizonaTucson
  3. 3.Department of AgronomyPurdue UniversityWest Lafayette
  4. 4.Genomics Core FacilityPurdue UniversityWest Lafayette
  5. 5.Cold Spring Harbor LaboratoryCold Spring Harbor
  6. 6.International Rice Research InstituteLos BañosThe Philippines
  7. 7.National Center for Gene ResearchShanghaiChina

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