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Molecular Biology Reports

, Volume 44, Issue 2, pp 233–242 | Cite as

Complete mitochondrial genome sequences of Korean native horse from Jeju Island: uncovering the spatio-temporal dynamics

  • Sook Hee Yoon
  • Jaemin Kim
  • Donghyun Shin
  • Seoae Cho
  • Woori Kwak
  • Hak-Kyo Lee
  • Kyoung-Do Park
  • Heebal Kim
Original Article

Abstract

The Korean native horse (Jeju horse) is one of the most important animals in Korean historical, cultural, and economical viewpoints. In the early 1980s, the Jeju horse was close to extinction. The aim of this study is to explore the phylogenomics of Korean native horse focusing on spatio-temporal dynamics. We determined complete mitochondrial genome sequences for the first Korean native (n = 6) and additional Mongolian (n = 2) horses. Those sequences were analyzed together with 143 published ones using Bayesian coalescent approach as well as three different phylogenetic analysis methods, Bayesian inference, maximum likelihood, and neighbor-joining methods. The phylogenomic trees revealed that the Korean native horses had multiple origins and clustered together with some horses from four European and one Middle Eastern breeds. Our phylogenomic analyses also supported that there was no apparent association between breed or geographic location and the evolution of global horses. Time of the most recent common ancestor of the Korean native horse was approximately 13,200–63,200 years, which was much younger than 0.696 My of modern horses. Additionally, our results showed that all global horse lineages including Korean native horse existed prior to their domestication events occurred in about 6000–10,000 years ago. This is the first study on phylogenomics of the Korean native horse focusing on spatio-temporal dynamics. Our findings increase our understanding of the domestication history of the Korean native horses, and could provide useful information for horse conservation projects as well as for horse genomics, emergence, and the geographical distribution.

Keywords

Korean native horse Mitogenome Spatio-temporal dynamics Bayesian coalescent approach 

Notes

Acknowledgements

This work was carried out with the support of “Cooperative Research Program for Agriculture Science & Technology Development (Project No. PJ01040603)” Rural Development Administration, Republic of Korea.

Supplementary material

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Copyright information

© Springer Science+Business Media Dordrecht 2017

Authors and Affiliations

  • Sook Hee Yoon
    • 1
  • Jaemin Kim
    • 1
  • Donghyun Shin
    • 1
  • Seoae Cho
    • 2
  • Woori Kwak
    • 3
  • Hak-Kyo Lee
    • 4
  • Kyoung-Do Park
    • 5
  • Heebal Kim
    • 1
    • 2
  1. 1.Department of Agricultural Biotechnology and Research Institute for Agriculture and Life SciencesSeoul National UniversitySeoulRepublic of Korea
  2. 2.C&K GenomicsSeoul National University Mt.4-2SeoulRepublic of Korea
  3. 3.Interdisciplinary Program in BioinformaticsSeoul National UniversitySeoulRepublic of Korea
  4. 4.The Animal Genomics and Breeding CenterChonbuk National UniversityJeonjuRepublic of Korea
  5. 5.Genomic Informatics CenterHankyong National UniversityAnseongRepublic of Korea

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