Journal of Biological Physics

, Volume 39, Issue 4, pp 673–685

Network model of a protein globule

Original Paper

DOI: 10.1007/s10867-013-9326-8

Cite this article as:
Meilikhov, E.Z. & Farzetdinova, R.M. J Biol Phys (2013) 39: 673. doi:10.1007/s10867-013-9326-8

Abstract

Phase transition of a protein globule is considered in the frameworks of (i) the generalized mean-field theory for the order parameter, characterizing the extent of the deviation of a protein three-dimensional structure from its native state and (ii) the network model that treats a protein globule as a small-world network with a significant percent of long-range links between amino acid residues. Temperature dependencies of the introduced order parameter are defined and phase-transition temperatures are found on the basis of the function defining the distribution of links’ numbers for protein residues. An important role of long-range links, promoting considerable rise of thermal protein stability, is demonstrated by the example of a correlation between protein melting temperature and a fraction of disulfide bonds.

Keywords

Protein globule Network model Small-world network Phase transition Order parameter Mean-field theory Long-range links 

Copyright information

© Springer Science+Business Media Dordrecht 2013

Authors and Affiliations

  1. 1.Kurchatov InstituteMoscowRussia

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