Modeling temperature entrainment of circadian clocks using the Arrhenius equation and a reconstructed model from Chlamydomonas reinhardtii
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Endogenous circadian rhythms allow living organisms to anticipate daily variations in their natural environment. Temperature regulation and entrainment mechanisms of circadian clocks are still poorly understood. To better understand the molecular basis of these processes, we built a mathematical model based on experimental data examining temperature regulation of the circadian RNA-binding protein CHLAMY1 from the unicellular green alga Chlamydomonas reinhardtii, simulating the effect of temperature on the rates by applying the Arrhenius equation. Using numerical simulations, we demonstrate that our model is temperature-compensated and can be entrained to temperature cycles of various length and amplitude. The range of periods that allow entrainment of the model depends on the shape of the temperature cycles and is larger for sinusoidal compared to rectangular temperature curves. We show that the response to temperature of protein (de)phosphorylation rates play a key role in facilitating temperature entrainment of the oscillator in Chlamydomonas reinhardtii. We systematically investigated the response of our model to single temperature pulses to explain experimentally observed phase response curves.
KeywordsCircadian oscillator Temperature compensation Temperature entrainment Phase response curves Chlamydomonas reinhardtii
We gratefully acknowledge funding from the German Federal Ministry of Education and Research (BMBF, project no. 0315260A) within the Research Initiative in Systems Biology (FORSYS).
- 9.Schmidt, M., Gessner, G., Luff, M., Heiland, I., Wagner, V., Kaminski, M., Geimer, S., Eitzinger, N., Reissenweber, T., Voytsekh, O., Fiedler, M., Mittag, M., Kreimer, G.: Proteomic analysis of the eyespot of Chlamydomonas reinhardtii provides novel insights into its components and tactic movements. Plant Cell 18, 1908–1930 (2006)CrossRefGoogle Scholar
- 37.Bruce, V.G.: Mutants of the biological clock in Chlamydomonas reinhardtii. Genetics 70, 537–548 (1972)Google Scholar