Journal of Computer-Aided Molecular Design

, Volume 19, Issue 8, pp 609–615

Validated ligand mapping of ACE active site

Article

DOI: 10.1007/s10822-005-9017-z

Cite this article as:
Kuster, D.J. & Marshall, G.R. J Comput Aided Mol Des (2005) 19: 609. doi:10.1007/s10822-005-9017-z

Summary

Crystal structures of angiotensin-converting enzyme (ACE) complexed with three inhibitors (lisinopril, captopril, enalapril) provided experimental data for testing the validity of a prior active site model predicting the bound conformation of the inhibitors. The ACE active site model – predicted over 18 years ago using a series of potent ACE inhibitors of diverse chemical structure – was recreated using published data and commercial software. Comparison between the predicted structures of the three inhibitors bound to the active site of ACE and those determined experimentally yielded root mean square deviation (RMSD) values of 0.43–0.81 Å, among the distances defining the active site map. The bound conformations of the chemically relevant atoms were accurately deduced from the geometry of ligands, applying the assumption that the geometry of the active site groups responsible for binding and catalysis of amide hydrolysis was constrained. The mapping of bound inhibitors at the ACE active site was validated for known experimental compounds, so that the constrained conformational search methodology may be applied with confidence when no experimentally determined structure of the enzyme yet exists, but potent, diverse inhibitors are available.

Keywords

active analog angiotensin-converting enzyme (ACE) captopril constrained systematic search enalapril lisinopril ramipril 

Copyright information

© Springer Science+Business Media, Inc. 2005

Authors and Affiliations

  1. 1.Center for Computational BiologyWashington UniversitySt. LouisUSA
  2. 2.Department of Biomedical EngineeringWashington UniversitySt. LouisUSA
  3. 3.Department of Biochemistry and Molecular BiophysicsWashington UniversitySt. LouisUSA

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