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Genetic Resources and Crop Evolution

, Volume 66, Issue 8, pp 1791–1811 | Cite as

Combined study on genetic diversity of wheat genotypes using SNP marker and phenotypic reaction to Heterodera filipjevi

  • Zahra Majd Taheri
  • Zahra Tanha MaafiEmail author
  • Kumarse Nazari
  • Khalil Zaynali Nezhad
  • Farshad Rakhshandehroo
  • Abdelfattah A. Dababat
Research Article
  • 28 Downloads

Abstract

Wheat is the most important host for cereal cyst nematode, Heterodera filipjevi. The wild relatives of wheat have important sources of resistance genes to cereal nematodes. Phenotypic and genotypic evaluations have important implications for breeding programs, hence in this study information on the reaction of wheat genotypes to H. filipjevi and their genetic relationships are provided. A total of 223 wheat genotypes originating mostly from West Asia and North Africa (WANA countries) were evaluated against the H. filipjevi. Genetic diversity of 188 genotypes were assessed by using a 152 K single nucleotide polymorphism (SNP) chip. Data were analysed using generalized linear model, showed that there are significant differences at P ≤ 0.0001 among the tested genotypes. UPGMA clustering analysis clearly distinguished the genotypes into two main groups based on 840 SNP markers. The first group (A) consisted of 177 accessions containing multiple clusters, whilst the second group (B) with 11 accessions formed only a single cluster. The similarity coefficient between the accessions ranged from 0.30 and 0.99 with an average of 0.64. The present study demonstrated valuable source of resistance to the local population of H. filipjevi in a diverse range of bread wheat landraces that expand our knowledge towards promising perspective in development of resistant genotype in control strategies of cereal cyst nematode.

Keywords

Cereal cyst nematode Genetic diversity SNP Bread wheat landraces 

Notes

Acknowledgements

We would like to thank Farhad Saeidi Naeini from Nematology Research Department, Iranian Research Institute of Plant Protection for the help in statistical analyses.

Compliance with ethical standards

Conflict of interest

The authors declare that they have no conflict of interest.

Human and animal rights

This research did not involve human participants or animals.

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Copyright information

© Springer Nature B.V. 2019

Authors and Affiliations

  • Zahra Majd Taheri
    • 1
  • Zahra Tanha Maafi
    • 2
    Email author
  • Kumarse Nazari
    • 3
  • Khalil Zaynali Nezhad
    • 4
  • Farshad Rakhshandehroo
    • 1
  • Abdelfattah A. Dababat
    • 5
  1. 1.Department of Plant Pathology, College of Agriculture and Natural Resources, Science and Research BranchIslamic Azad UniversityTehranIran
  2. 2.Iranian Research Institute of Plant ProtectionAgricultural Research, Education and Extension Organization (AREEO)TehranIran
  3. 3.International Center for Agricultural Research in the Dry Areas, Regional Cereal Rust Research CenterAegean Agricultural Research InstituteIzmirTurkey
  4. 4.Plant Breeding and Biotechnology DepartmentGorgan University of Agricultural Sciences and Natural ResourcesGorgānIran
  5. 5.International Maize and Wheat Improvement CenterEmek, AnkaraTurkey

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