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Euphytica

, 215:4 | Cite as

Genome-wide association study for an efficient selection of Fusarium head blight resistance in winter triticale

  • Ana L. Galiano-Carneiro
  • Philipp H. G. Boeven
  • Hans Peter Maurer
  • Tobias Würschum
  • Thomas MiedanerEmail author
Article
  • 130 Downloads

Abstract

Fusarium head blight (FHB) is one of the most serious diseases in small-grain cereals including triticale (× Triticosecale Wittmack). The disease reduces yield and accumulates mycotoxins which are harmful to human and animal health. Triticale grain is almost exclusively used on-farm in feed formulations for swine and other animals, and swine is the most susceptible farm animal to Fusarium mycotoxins. In order to evaluate the potential of genomics-assisted breeding to FHB, we performed the first genome-wide association study for FHB resistance in triticale. QTL for FHB resistance were identified on chromosomes 2A, 2B, 5B and 3R with an explained genotypic variance ranging from 0.28 to 30.23% and a total explained genetic variance of 56.64%. A QTL on chromosome 3R that explained 15.38% of the genotypic variance was identified for the first time. Association mapping was complemented by genome-wide prediction, which yielded a high prediction accuracy of 0.78 for FHB resistance when weighted genomic selection was performed. Collectively our findings highlight the potential of genomics-assisted approaches to improve Fusarium resistance in triticale in early generations.

Keywords

Fusarium head blight (FHB) Genome-wide association (GWA) Genomics-assisted breeding (GAB) Genomic selection (GS) Triticale 

Abbreviations

BLUEs

Best linear unbiased estimators

DON

Deoxynivalenol

FHB

Fusarium head blight

FT

Flowering time

GEBV

Genomic estimated breeding value

GS

Genomic selection

GWA

Genome-wide association

K

Kinship

MAF

Minor allele frequency

MAS

Marker-assisted selection

NIV

Nivalenol

PCA

Principal component analysis

PH

Plant height

QTL

Quantitative trait loci

RR-BLUP

Ridge-regression BLUP

wRR-BLUP

Weighted ridge-regression BLUP

ZON

Zearalenone

Notes

Acknowledgements

The molecular marker data was funded by the Federal Ministry of Food and Agriculture (BMEL) through its project management body Fachagentur für Nachwachsende Rohstoffe e.V. (FNR) (Grants: 22406112, 22406212, 22406312, and 22406412). We thank the Federal Ministry of Food and Agriculture (BMEL) based on a decision of the Parliament of the Federal Republic of Germany via the Federal Office for Agriculture and Food (BLE) under the innovation support program within the PRIMA cooperative project (Grant No. 2818202815) for financially supporting the first author of this project. The authors also would like to thank Tizian Zollinger for the collection of phenotypic data within his master thesis and Dr. S. Weissmann, HegeSaat GmbH & Co. KG, Singen, for providing genotypes. We highly appreciate the excellent technical support of the teams at Hohenheim and Oberer Lindenhof.

Compliance with ethical standards

Conflict of interest

The authors declare that they have no conflict of interest.

Ethical standard

The authors declare that the experiments comply with the current laws of Germany.

Supplementary material

10681_2018_2327_MOESM1_ESM.pdf (111 kb)
Supplementary material 1 (PDF 111 kb)

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Copyright information

© Springer Nature B.V. 2018

Authors and Affiliations

  1. 1.State Plant Breeding InstituteUniversity of HohenheimStuttgartGermany
  2. 2.Limagrain GmbHPeine-RosenthalGermany

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