Skip to main content

Advertisement

Log in

The coming of age of conservation genetics in Latin America: what has been achieved and what needs to be done

  • Review Article
  • Published:
Conservation Genetics Aims and scope Submit manuscript

Abstract

Genetic research is a well-recognized component of understanding biodiversity and is an invaluable approach for documenting and mitigating increasingly high rates of loss. Here we present a quantitative synthesis of conservation genetics science in Latin America and its progress, focusing on evolving trends on different taxonomic groups, environments and markers. We reviewed 528 conservation genetics research papers published in 57 journals from 1992 to 2013. Brazil and Mexico were the most represented countries in the literature and there was a marked disparity between terrestrial (~64%) and aquatic-marine research (~36%). More than a third or the articles focused on plants (~35%) while the other (65%) were animal studies with a clear emphasis on mammals (35%) and bony fishes (24%). Most research (42%) addressed patterns of population structure, while 17% focused on genetic diversity issues and 14% focused on the description of novel genetic markers. Finally, although genetics has become an integral part of conservation biology, genetic analyses have often not been completely integrated into the development of conservation and management strategies and formal policies. We discuss the levels to which these types of studies can effectively contribute to biodiversity conservation in this region, and offer suggestions on how conservation genetic approaches may be used more broadly, enhancing the connectivity between scientists and policy makers.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Allendorf FW, Hohenlohe PA, Luikart G (2010) Genomics and the future of conservation genetics. Nat Rev Genet 11:697–709

    Article  CAS  PubMed  Google Scholar 

  • Barlow J, Calambokidis J, Falcone EA et al (2011) Humpback whale abundance in the North Pacific estimated by photographic capture-recapture with bias correction from simulation studies. Mar Mamm Sci 27:793–818

    Article  Google Scholar 

  • Barnosky AD, Matzke M, Tomiya S et al (2011) Has the Earth’s sixth mass extinction already arrived? Nature 471:51–57

    Article  CAS  PubMed  Google Scholar 

  • Benirschke K, Kumamoto AT (1991) Mammalian cytogenetics and conservation of species. J Hered 82:187–191

    Article  CAS  PubMed  Google Scholar 

  • Bourlat SJ, Borja A, Gilbert J et al (2013) Genomics in marine monitoring: new opportunities for assessing marine health status. Mar Pollut Bull 74:19–31

    Article  CAS  PubMed  Google Scholar 

  • Bowen BW, Abreu-Grobois FA, Balazs GH, Kamezaki N, Limpus CJ, Ferl RJ (1995) Trans-Pacific migrations of the loggerhead turtle (Caretta caretta) demonstrated with mitochondrial DNA markers. PNAS 92:3771–3774

    Article  Google Scholar 

  • Bowman J, Greenhorn JE, Marrotte RR, McKay MM, Morris KY, Mrentice MB, Wehtje M (2016) On application of landscape genetics. Conserv Genet 17:753–760

    Article  Google Scholar 

  • Cardoso MA, Provan J, Powell W, Ferreiras PCE, de Oliveira PE (1998) High genetic differentiation among remnant populations of the endangered Caesalpinia echinata Lam. (Leguminosae-Caesalpinoideae). Mol Ecol 7:601–608

    Article  Google Scholar 

  • Ceballos G, Brown JH (1995) Global patterns of mammalian diversity, endemism, and endangerment. Conserv Biol 9:559–568

    Article  Google Scholar 

  • Ceballos G, Vale GMM, Bonacic C et al (2009) Conservation challenges for the Austral and Neotropical America section. Conserv Biol 23:811–817

    Article  PubMed  Google Scholar 

  • Costello MJ, May RM, Stork NE (2013) Can we name earth’s species before they go extinct? Science 339:413–416

    Article  CAS  PubMed  Google Scholar 

  • De-Franco B, Mendonça FF, Hashimoto DT, Porto-Foresti F, Oliveira C, Foresti F (2010) Forensic identification of the guitarfish species Rhinobatos horkelli, R. percellens and Zapteryx brevirostris using multiplex-PCR. Mol Ecol Resour 10:197–199

    Article  CAS  PubMed  Google Scholar 

  • Dirzo R, Young HS, Galetti M, Ceballos G, Isaac NJ, Collen B (2014) Defaunation in the Anthropocene. Science 345:401–406

    Article  CAS  PubMed  Google Scholar 

  • Eguiarte LE, Perez-Nasser N, Piñero D (1992) Genetic structure, outcrosing rate and heterosis in Astrocaryum mexicanum (tropical palm): implications for evolution and conservation. Heredity 69:217–228

    Article  CAS  Google Scholar 

  • Fischer J, Lindenmayer DB (2000) An assessment of the published results of animal relocations. Biol Conserv 96:1–11

    Article  Google Scholar 

  • Fisher MC, Garner TW, Walker SF (2009) Global emergence of Batrachochytrium dendrobatidis and amphibian chytridiomycosis in space, time, and host. Annu Rev Microbiol 63:291–310

    Article  CAS  PubMed  Google Scholar 

  • Frankel OH, Bennett E (1970) Genetic resources: introduction. In: Frankel OH, Bennett E (eds) Genetic resources in plants: their exploration and conservation. Blackwell, Oxford, pp 7–17

    Google Scholar 

  • Frankel OH, Soulé M (1981) Conservation and evolution. Cambridge University Press, Cambridge

    Google Scholar 

  • Frankham R (2010) Challenges and opportunities of genetic approaches to biological conservation. Biol Conserv 143:1919–1927

    Article  Google Scholar 

  • Funk WC, McKay JK, Hohenlohe PA, Allendorf FW (2012) Harnessing genomics for delineating conservation units. TREE 27:489–496

    PubMed  PubMed Central  Google Scholar 

  • Gaynor KM, Fiorella KJ, Gregory GH, Kurz DJ, Seto KL, Withey LS, Brashares JS (2016) War and wildlife: linking armed conflict to conservation. Front Ecol Environ 14:533–542

    Article  Google Scholar 

  • Gompert Z (2012) Population genomics as a new tool for wildlife management. Mol Ecol 21:1542–1544

    Article  PubMed  Google Scholar 

  • González S, Maldonado JE, Leonard JA, Vilá C, Barbanti-Duarte JM, Merino M, Brum-Zorilla N, Wayne RK (1998) Conservation genetics of the endangered Pampas deer (Ozotoceros bezoarticus). Mol Ecol 7:47–56

    Article  PubMed  Google Scholar 

  • González-Astorga J, Vovides AP, Cruz-Angon A, Octavio-Aguilar P, Iglesias C (2005) Allozyme variation in the three extant populations of the narrowly endemic cycad Dioon angustifolium Miq. (Zamiaceae) from North-eastern Mexico. Ann Bot-London 95:999–1007

    Article  Google Scholar 

  • González-Astorga J, Vergara-Silva F, Vovides A, Nicolalde-Morejón F, Cabrera-Toledo D, Pérez-Farrera MA (2008) Diversity and genetic structure of three species of Dioon Lindl. (Zamiaceae, Cycadales) from the Pacific seaboard of Mexico. Biol J Linn Soc 94:765–776

    Article  Google Scholar 

  • Gordon IJ, Evans DM, Garner TWJ et al (2014) Enhancing communication between conservation biologists and conservation practitioners: letter from the conservation front line. Anim Conserv 17:1–2

    Article  Google Scholar 

  • Haig SM, Wagner RS, Forsman ED, Mullins TD (2001) Geographic variation and genetic structure in spotted owls. Conserv Genet 2:25–40

    Article  CAS  Google Scholar 

  • Haig SM, Miller MP, Bellinger MR, Draheim HM, Mercer DM, Mullins TD (2016) The conservation genetics juggling act: integrating genetics and ecology science policy. Evol Appl 9:181–195

    Article  CAS  PubMed  Google Scholar 

  • Heino M, Kummu M, Makkonen M, Mulligan M, Verburg PH, Jalava M, Räsänen TA (2015) Forest loss in protected areas and intact forest landscapes: a global analysis. PLoS ONE 10:e0138918

    Article  PubMed  PubMed Central  Google Scholar 

  • Hoban SM, Hauffe HC, Pérez-Espona S et al (2013a) Bringing genetic diversity to the forefront of conservation policy and management. Conserv Genet Resour 5:593–598

    Article  Google Scholar 

  • Hoban SM, Arntzen JW, Bertorelle G et al (2013b) Conservation genetic resources for effective species survival (ConGRESS): bridging the divide between conservation research and practice. J Nat Conserv 21:433–437

    Article  Google Scholar 

  • Hogg CJ, Grueber CE, Pemberton D et al (2017) ‘Devil Tools & Tech’: a synergy of conservation research and management practice. Conserv Lett 10:133–138

    Article  Google Scholar 

  • Hughes AR, Brian DI, Marc TJJ, Nora U, Mark V (2008) Ecological consequences of genetic diversity. Ecol Lett 11:609–623

    Article  PubMed  Google Scholar 

  • Inza MV, Zelener N, Fornes L, Gallo LA (2012) Effect of latitudinal gradient and impact of logging on genetic diversity of Cedrela lilloi along the Argentine Yungas Rainforest. Ecol Evol 2:2722–2736

    Article  PubMed  PubMed Central  Google Scholar 

  • Jamieson IG, Wallis GP, Briskie JV (2006) Inbreeding and endangered species management: is New Zealand out of step with the rest of the world? Conserv Biol 20:38–47

    Article  PubMed  Google Scholar 

  • Laikre L (2010) Genetic diversity is overlooked in international conservation policy implementation. Conserv Genet 11:349–354

    Article  Google Scholar 

  • Lara-Ruiz P, Chiarello AG, Santos FR (2008) Extreme population divergence and conservation implications for the rare endangered Atlantic Forest sloth, Bradypus torquatus (Pilosa: Bradypodidae). Biol Conserv 141:1332–1342

    Article  Google Scholar 

  • Lee CE (2002) Evolutionary genetics of invasive species. TREE 17:386–391

    Google Scholar 

  • Leisher C, Touval J, Hess S, Boucher T, Reymondin L (2013) Land and forest degradation inside protected areas in Latin America. Diversity 5:779–795

    Article  Google Scholar 

  • Lenhard SC, Witter JA (1977) Insects as biological indicators of environmental change. Bull Entomol Soc Am 23:191–193

    Google Scholar 

  • Levin II, Zwiers P, Deem SL et al (2013) Multiple lineages of Avian malaria parasites (Plasmodium) in the Galapagos Islands and evidence for arrival via migratory birds. Conserv Biol 27:1366–1377

    Article  CAS  PubMed  Google Scholar 

  • Lousada JM, Borba EL, Ribeiro KT, Ribeiro LC, Lovato MB (2011) Genetic structure and variability of the endemic and vulnerable Vellozia gigantea (Velloziaceae) associated with the landscape in the Espinhaco Range, in southeastern Brazil: implications for conservation. Genetica 139:431–440

    Article  PubMed  Google Scholar 

  • Male TD, Bean MJ (2005) Measuring progress in US endangered species conservation. Ecol Lett 9:986:992

    Article  Google Scholar 

  • Mariguela TC, De-Franco B, Almeida TVV, Mendonça FF, Gadig OBF, Foresti F, Oliveira C (2009) Identification of guitarfish species Rhinobatos percellens, R. horkelli, and Zapteryx brevirostris (Chondrichthyes) using mitochondrial genes and RFLP technique. Conserv Genet Resour 1:393–396

    Article  Google Scholar 

  • Marín JC, Corti P, Saucedo C, González BA (2009) Application of DNA forensic techniques for identifying poached guanacos (Lama guanicoe) in Chilean Patagonia. J Forensic Sci 54:1073–1076

    Article  PubMed  Google Scholar 

  • Márquez A, Maldonado JE, González S, Beccaceci MD, Garcia JE, Duarte JMB (2006) Phylogeography and Pleistocene demographic history of the endangered marsh deer (Blastocerus dichotomus) from the Río de la Plata Basin. Conserv Genet 7:563–575

    Article  Google Scholar 

  • Martín-López B, Montes C, Ramírez L, Benayas J (2009) What drives policy decision-making related to species conservation? Biol Conserv 142:1370–1380

    Article  Google Scholar 

  • Mendez M, Gomez A, Bynum N, Medellin R, Porzecanski AL, Sterling E (2007) Availability of formal academic programs in conservation biology in Latin America. Conserv Biol 21:1399–1403

    Article  PubMed  Google Scholar 

  • Millennium Ecosystem Assessment (2005) Ecosystems and human well-being: synthesis. Island Press, Washington

    Google Scholar 

  • Mora C, Rollo A, Tittensor DP (2013) Comment on “can we name earth’s species before they go extinct?” Science 341:237–238

    Article  CAS  PubMed  Google Scholar 

  • Morafka D, Aguirre G, Murphy RW (1994) Allozyme differentiation among gopher tortoises (Gopherus): conservation genetics and phylogenetic and taxonomic implications. Can J Zool 72:1665–1671

    Article  Google Scholar 

  • Myers N, Mittermeier RA, Mittermeier CG, da Fonseca GAB, Kent J (2000) Biodiversity hotspots for conservation priorities. Nature 403:853–858

    Article  CAS  PubMed  Google Scholar 

  • Oliveira-Miranda MA, Martino AM, De Oliveira-Miranda RM, Balboa K, Aguilera M (2013) Conserving the genetic diversity of plants in Austral and Neotropical America (ANA): a metanalysis of published studies using samples of the region. Bot Rev 79:449–468

    Article  Google Scholar 

  • Pérez-Espona S, ConGRESS Consortium (2017) Conservation genetics in the European Union - biases, gaps and future directions. Biol Cons 209:130–136

  • Piggott MP, Chao NL, Beheregaray LB (2011) Three fishes in one: cryptic species in an Amazonian floodplain forest specialist. Biol J Linn Soc 102:391–403

    Article  Google Scholar 

  • Pimper LE, Goodall N, Olavarria C, Baker S, Remis MI (2010) Mitochondrial DNA variation and population structure of Commerson’s dolphins (Cephalorhynchus commersonii) in their southernmost distribution. Conserv Genet 11:2157–2168

    Article  Google Scholar 

  • Pinzon JH, LaJeunesse TC (2011) Species delimitation of common reef corals in the genus Pocillopora using nucleotide sequence phylogenies, population genetics and symbiosis ecology. Mol Ecol 20:311–325

    Article  CAS  PubMed  Google Scholar 

  • Poelstra JW, Vijay N, Bossu CM et al (2014) The genomic landscape underlying phenotypic integrity in the face of gene flow in crows. Science 344:1410–1414

    Article  CAS  PubMed  Google Scholar 

  • Pope TR (1998) Genetic variation in remnant populations of the woolly spider monkey (Brachyteles arachnoides). Int J Primatol 19:95–109

    Article  Google Scholar 

  • Pounds JA, Bustamante MR, Coloma LA, Consuegra JA, Fogden MPL, Foster PN, La Marca E, Masters KL, Merino-Viteri A, Puschendorf R, Ron SR, Sánchez-Azofeifa GA, Still CJ, Young BE (2006) Widespread amphibian extinctions from epidemic disease driven by global warming. Nature 439:161–167

    Article  CAS  PubMed  Google Scholar 

  • Ramey RR (1995) Mitochondrial DNA variation, population structure, and evolution of mountain sheep in the south-western United States and Mexico. Mol Ecol 4:429–440

    Article  CAS  PubMed  Google Scholar 

  • Ray DA, Dever JA, Platt SG (2004) Low levels of nucleotide diversity in Crocodylus moreletii and evidence of hybridization with C. acutus. Conserv Genet 5:449–462

    Article  CAS  Google Scholar 

  • Rodriguez JP, Simonetti JA, Premoli A, Marini MA (2005) Conservation in Austral and Neotropical America: building scientific capacity equal to the challenges. Conserv Biol 19:969–972

    Article  Google Scholar 

  • Rodríguez-Clark KM, Oliveira-Miranda MA, Meneses MA et al (2015) Finding the “conservation” in conservation genetics-progress in Latin America. J Hered 106:423–427

    Article  PubMed  Google Scholar 

  • Sagarin R, Carlsson J, Duval M et al (2009) Bringing molecular tools into environmental resource management: untangling the molecules to policy pathway. PloS Biol 7:426–430

    Article  CAS  Google Scholar 

  • Sgorbati S, Labra M, Grugni E et al (2004) A survey of genetic diversity and reproductive biology of Puya raimondii (Bromeliaceae), the endangered queen of the Andes. Plant Biol 6:222–230

    Article  CAS  PubMed  Google Scholar 

  • Shafer ABA, Wolf JBW, Alves PC et al (2015) Genomics and the challenging translation into conservation practice. TREE 30:78–87

    PubMed  Google Scholar 

  • Shamblin BM, Bjorndal KA, Bolten AB, Hillis-Starr ZM, Lundgren I, Naro-Maciel E, Nairn CJ (2012) Mitogenomic sequences better resolve stock structure of southern Greater Caribbean green turtle rookeries. Mol Ecol 21:2330–2340

    Article  CAS  PubMed  Google Scholar 

  • Steiner CC, Putnam AS, Hoeck PE, Ryder OA (2013) Conservation genomics of threatened animal species. Ann RevAnim Biosci 1:261–281

    Article  Google Scholar 

  • Struebig MJ, Kingston T, Petit EJ, Le Comber SC, Zubaid A, Mohd-Adnan A, Rossiter SJ (2011) Parallel declines in species and genetic diversity in tropical forest fragments. Ecol Lett 14:582–590

    Article  PubMed  Google Scholar 

  • Stuart SN, Chanson JS, Cox NA, Young BE, Rodrigues ASL, Fischmann DL, Waller RW (2004) Status and trends of amphibian declines and extinctions worldwide. Science 306:1783–1786

    Article  CAS  PubMed  Google Scholar 

  • Tagliaro CH, Schneider MPC, Schneider H, Sampaio IC, Stanhope MJ (1997) Marmoset phylogenetics, conservation perspectives, and evolution of the mtDNA control region. Mol Biol Evol 14:674–684

    Article  CAS  PubMed  Google Scholar 

  • Templeton AR, Robertson RJ, Brisson J, Strasburg J (2001) Disrupting evolutionary processes: the effect of habitat fragmentation on collared lizards in the Missouri Ozarks. PNAS 98:5426–5432

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Torres-Florez JP, Hucke-Gaete R, LeDuc R et al (2014) Blue whale population structure along the eastern South Pacific Ocean: evidence of more than one population. Mol Ecol 23:5998–6010

    Article  CAS  PubMed  Google Scholar 

  • Trigo TC, Schneider A, Oliveira TG, Lehugeur L, Silveira L, Freitas TRO, Eizirik E (2013) Molecular data reveal complex hybridization and a cryptic species of neotropical wild cat. Curr Biol 23:2528–2533

    Article  CAS  PubMed  Google Scholar 

  • Van Noorden R (2014) South America by the numbers. Nature 510:202–203

  • Vianna JA, Bonde RK, Caballero S et al (2006) Phylogeography, phylogeny and hybridization in trichechid sirenians: implications for manatee conservation. Mol Ecol 15:433–447

    Article  CAS  PubMed  Google Scholar 

  • Welsh HH, Ollivier LM (1998) Stream amphibians as indicators of ecosystem stress: a case study from California’s redwoods. Ecol Appl 8:1118–1132

    Google Scholar 

  • Wilson JRU, Proches S, Braschler B, Dixon ES, Richardson DM (2007) The bio(diversity) of science reflects the interests of society. Front Ecol Environ 5:409–414

    Article  Google Scholar 

  • Woolaver LG, Nichols RK, Morton E, Stutchbury BJ (2013) Population genetics and relatedness in a critically endangered island raptor, Ridgway’s Hawk Buteo ridgwayi. Conserv Genet 14:559–571

    Article  Google Scholar 

  • Yahnke CJ, Johnson WE, Geffen E et al (1996) Darwin’s fox: a distinct endangered species in a vanishing habitat. Conserv Biol 10:366–375

    Article  Google Scholar 

  • Young DL, Allard MW (1997) Conservation genetics of the plain pigeon Columba inornata in Puerto Rico and the Dominican Republic. Mol Ecol 6:877–879

    Article  CAS  Google Scholar 

  • Zhou X, Sun F, Xu S et al (2013) Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations. Nat Commun 4:2708–2713

    PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

This work was funded by a FAPESP postdoctoral fellowship (2013/23198-0) to JPTF, together with a visiting researcher FAPESP Grant (2014/12681-5) to PMGJ and WEJ. PMGJ also thanks CNPq (308385/2014-4 and 401401/2014-6).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Juan Pablo Torres-Florez.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Torres-Florez, J.P., Johnson, W.E., Nery, M.F. et al. The coming of age of conservation genetics in Latin America: what has been achieved and what needs to be done. Conserv Genet 19, 1–15 (2018). https://doi.org/10.1007/s10592-017-1006-y

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10592-017-1006-y

Keywords

Navigation