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Conservation Genetics

, Volume 19, Issue 1, pp 27–41 | Cite as

Genetic divergence between colonies of Flesh-footed Shearwater Ardenna carneipes exhibiting different foraging strategies

  • Anicee J. LombalEmail author
  • Theodore J. Wenner
  • Jennifer L. Lavers
  • Jeremy J. Austin
  • Eric J. Woehler
  • Ian Hutton
  • Christopher P. Burridge
Research Article

Abstract

Increasing evidence suggests foraging segregation as a key mechanism promoting genetic divergence within seabird species. However, testing for a relationship between population genetic structure and foraging movements among seabird colonies can be challenging. Telemetry studies suggest that Flesh-footed Shearwater Ardenna carneipes that breed at Lord Howe Island or New Zealand, versus southwestern Australia or Saint-Paul Island in the Indian Ocean, migrate to different regions (North Pacific Ocean and northern Indian Ocean, respectively) during the non-breeding season, which may inhibit gene flow among colonies. In this study, we sequenced a 858-base pair mitochondrial region and seven nuclear DNA fragments (352–654 bp) for 148 individuals to test genetic differentiation among colonies of Flesh-footed Shearwaters. Strong genetic divergence was detected between Pacific colonies relative to those further West. Molecular analysis of fisheries’ bycatch individuals sampled in the Sea of Japan indicated that individuals from both western and eastern colonies were migrating through this area, and hence the apparent segregation of the non-breeding distribution based on telemetry is invalid and cannot contribute to the population genetic structure among colonies. The genetic divergence among colonies is better explained by philopatry and evidence of differences in foraging strategies during the breeding season, as supported by the observed genetic divergence between Lord Howe Island and New Zealand colonies. We suggest molecular analysis of fisheries’ bycatch individuals as a rigorous method to identify foraging segregation, and we recommend the eastern and western A. carneipes colonies be regarded as different Management Units.

Keywords

Oceanic seabirds Ardenna carneipes Gene flow Genetic divergence Foraging segregation Genetic assignment Conservation management 

Notes

Acknowledgements

South Australia Nature Foundation, Trading Consultants (V. Wellington), Pennicott Wilderness Journeys and the Winifred Violet Scott Charitable Trust provided funding for the field and laboratory components of this research. Special thanks go to C. & G. Biddulph, P. Collins, A. Fidler, S. Goldsworthy, M. Stadler, the South Australian Department of Environment, Water & Natural Resources (DEWNR), and Western Australian Department of Parks and Wildlife (DPaW) for generously providing data and logistical support. This research was undertaken with animal ethic permissions from DPaW (SF009585), the University of Tasmania Animal Ethics committee (A13598 and A13836), DEWNR Resources permits (AEC 021028/02), and Lord Howe Island Board permits (LHIB 07/12 & LHIB 02/14). We thank the anonymous reviewers for their careful reading of our paper.

Author contributions

AL, JL and IH performed the sample collection. AL and TW collected the molecular data. AL performed the statistical and Bayesian analyses. CB and JL designed the study. AL, CB, JL, IH, JA and EW contributed to the manuscript.

Supplementary material

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Supplementary Material SM XML files generated with BEAUti v.2.4.4 implemented in Beast2. (XML 274 KB)
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Supplementary Information SI Additional information relative to the study entitled: ‘Genetic divergence between colonies of Flesh-footed Shearwater Ardenna carneipes exhibiting different foraging strategies 1) Identification numbers of A. carneipes samples. 2) Number of A. carneipes individuals sequenced for Cytochrome b and seven nuclear DNA fragments. 3) Description of primers for seven nuclear DNA fragments. 4) Variable sites in Cytochrome b. 5) Characterization of genetic diversity for Cytochrome b and seven nuclear DNA fragments. 6) Deviation from neutral expectations. 7) Haplotype networks for seven nuclear DNA fragments based on the TCS algorithm. 8) AMOVA Φ-statistics for Cytochrome b. 9-10) Marginal posterior distribution of the genetic parameters as implemented with IMa/IMa2. 11) Extended Bayesian Skyline Plot (EBSP) for Cytochrome b and four nuclear DNA fragments. (DOCX 534 KB)

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Authors and Affiliations

  1. 1.School of Biological SciencesUniversity of TasmaniaHobartAustralia
  2. 2.Institute for Marine and Antarctic StudiesUniversity of TasmaniaHobartAustralia
  3. 3.Australian Centre for Ancient DNA, School of Biological SciencesUniversity of AdelaideAdelaideAustralia
  4. 4.Lord Howe Island MuseumLord Howe IslandAustralia

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