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Cluster Computing

, Volume 10, Issue 3, pp 301–310 | Cite as

Cyberinfrastructure for the analysis of ecological acoustic sensor data: a use case study in grid deployment

  • Randy ButlerEmail author
  • Mark Servilla
  • Stuart Gage
  • Jim Basney
  • Von Welch
  • Bill Baker
  • Terry Fleury
  • Patrick Duda
  • David Gehrig
  • Michael Bletzinger
  • Jing Tao
  • D. Michael Freemon
Article

Abstract

The LTER Grid Pilot Study was conducted by the National Center for Supercomputing Applications, the University of New Mexico, and Michigan State University, to design and build a prototype grid for the ecological community. The featured grid application, the Biophony Grid Portal, manages acoustic data from field sensors and allows researchers to conduct real-time digital signal processing analysis on high-performance systems via a web-based portal. Important characteristics addressed during the study include the management, access, and analysis of a large set of field collected acoustic observations from microphone sensors, single signon, and data provenance. During the development phase of this project, new features were added to standard grid middleware software and have already been successfully leveraged by other, unrelated grid projects. This paper provides an overview of the Biophony Grid Portal application and requirements, discusses considerations regarding grid architecture and design, details the technical implementation, and summarizes key experiences and lessons learned that are generally applicable to all developers and administrators in a grid environment.

Keywords

Acoustic signal analysis Case study Grid Security 

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References

  1. 1.
    Long Term Ecological Research Network, http://www.lternet.edu
  2. 2.
    LTER Network Information System Strategic Plan, http://intranet.lternet.edu/planning
  3. 3.
    Porter, J., Arzberger, P., Kratz, T., Hanson, P., Gage, S., Michener, W., Lin, F.-P., King, H., Braun, H.-W., Hanson, T., Shapiro, S., Bryant, P.: Wireless sensor networks for ecology. Bioscience 55, 561–572 (2005) CrossRefGoogle Scholar
  4. 4.
    Gage, S.H., Napoletano, B., Cooper, M.: Assessment of ecosystem biodiversity by acoustic diversity indices. J. Acoust. Soc. Am. 109(5), 2430 (2001) Google Scholar
  5. 5.
    Gage, S.H., Napoletano, B.: 2004. Envirosonics Equipment and Operations Manual. Computational Ecology and Visualization Laboratory, Michigan State University, 30 pp Google Scholar
  6. 6.
    Basney, J., Humphrey, M., Welch, V.: The MyProxy online credential repository. Software Pract. Experience 35(9), 801–816 (2005) CrossRefGoogle Scholar
  7. 7.
  8. 8.
    Sotomayor, B., Childers, L.: Globus Toolkit 4: Programming Java Services. Kaufmann (2005) Google Scholar
  9. 9.
    von Laszewski, G., Foster, I., Gawor, J., Lane, P.: A Java commodity grid kit. Concurr. Comput. Pract. Experience 13(89), 643–662 (2001) CrossRefGoogle Scholar
  10. 10.
  11. 11.
    Gamma, E., Helm, R., Johnson, R., Vlissides, J.: Design Patterns Elements of Reusable Object-Oriented Software, pp. 139–150. Addison-Wesley (1995) Google Scholar
  12. 12.
  13. 13.
    National Ecological Observatory Network, http://www.neoninc.org
  14. 14.
    Gullapalli, S., Dyke, S., Hubbard, P., Marcusiu, D., Pearlman, L., Severance, C.: Showcasing the features and capabilities of NEESgrid: a grid based system for the earthquake engineering domain. In: 13th IEEE International Symposium on High Performance Distributed Computing (HPDC-13 ’04), 2004, pp. 268–269 Google Scholar
  15. 15.
    Kornievskaia, O., Honeyman, P., Doster, B., Coffman, K.: Kerberized credential translation: a solution to web access control. In: 10th Usenix Security Symposium, 2001 Google Scholar
  16. 16.
  17. 17.
    Fleury, T.: Using X.509 proxy certificates with Tomcat and Windows XP, http://security.ncsa.uiuc.edu/research/wssec/gsihttps/gsitomcat.php
  18. 18.
    Tuecke, S., Welch, V., Engert, D., Pearlman, L., Thompson, M.: Internet X.509 public key infrastructure (PKI) proxy certificate profile, RFC 3820, IETF, June 2004 Google Scholar
  19. 19.
    Krishnan, S., Stearn, B., Bhatia, K., Baldridge, K., Li, W., Arzberger, P.: Opal: simple web services wrappers for scientific applications, SDSC TR-2006-5, http://www.sdsc.edu/techreports/SDSC-TR-2006-5-opal.pdf
  20. 20.
    Kandaswamy, G., Fang, L., Huang, Y., Shirasuna, S., Marru, S., Gannon, D.: Building web services for scientific grid applications. IBM J. Res. Dev. 50(2/3), 249–260 (2006) CrossRefGoogle Scholar
  21. 21.
    Basney, J., Humphrey, M., Welch, V.: The MyProxy online credential repository. Software Pract. Experience 35(8), (2005) Google Scholar

Copyright information

© Springer Science+Business Media, LLC 2007

Authors and Affiliations

  • Randy Butler
    • 1
    Email author
  • Mark Servilla
    • 2
  • Stuart Gage
    • 3
  • Jim Basney
    • 1
  • Von Welch
    • 1
  • Bill Baker
    • 1
  • Terry Fleury
    • 1
  • Patrick Duda
    • 1
  • David Gehrig
    • 1
  • Michael Bletzinger
    • 1
  • Jing Tao
    • 4
  • D. Michael Freemon
    • 1
  1. 1.National Center for Supercomputing ApplicationsUniversity of Illinois at Urbana-ChampaignUrbana-CampainUSA
  2. 2.Long Term Ecological Research (LTER) Network OfficeUniversity of New MexicoAlbuquerqueUSA
  3. 3.Kellogg Biological Station (KBS) LTERMichigan State UniversityEast LansingUSA
  4. 4.National Center for Ecological Analysis and SynthesisUniversity of CaliforniaSanta BarbaraUSA

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