Chromosome Research

, Volume 17, Issue 1, pp 47–64 | Cite as

Chromatin condensation in terminally differentiating mouse erythroblasts does not involve special architectural proteins but depends on histone deacetylation

  • Evgenya Y. Popova
  • Sharon Wald Krauss
  • Sarah A. Short
  • Gloria Lee
  • Jonathan Villalobos
  • Joan Etzell
  • Mark J. Koury
  • Paul A. Ney
  • Joel Anne Chasis
  • Sergei A. Grigoryev
Article

Abstract

Terminal erythroid differentiation in vertebrates is characterized by progressive heterochromatin formation and chromatin condensation and, in mammals, culminates in nuclear extrusion. To date, although mechanisms regulating avian erythroid chromatin condensation have been identified, little is known regarding this process during mammalian erythropoiesis. To elucidate the molecular basis for mammalian erythroblast chromatin condensation, we used Friend virus-infected murine spleen erythroblasts that undergo terminal differentiation in vitro. Chromatin isolated from early and late-stage erythroblasts had similar levels of linker and core histones, only a slight difference in nucleosome repeats, and no significant accumulation of known developmentally regulated architectural chromatin proteins. However, histone H3(K9) dimethylation markedly increased while histone H4(K12) acetylation dramatically decreased and became segregated from the histone methylation as chromatin condensed. One histone deacetylase, HDAC5, was significantly upregulated during the terminal stages of Friend virus-infected erythroblast differentiation. Treatment with histone deacetylase inhibitor, trichostatin A, blocked both chromatin condensation and nuclear extrusion. Based on our data, we propose a model for a unique mechanism in which extensive histone deacetylation at pericentromeric heterochromatin mediates heterochromatin condensation in vertebrate erythroblasts that would otherwise be mediated by developmentally-regulated architectural proteins in nucleated blood cells.

Key words

erythroblast enucleation chromatin condensation heterochromatin histone deacetylation 

Abbreviations

FVA cells

Friend virus-infected murine spleen erythroblasts

H3acK9,K14

histone H3 acetylated at lysines 9 and 14

H3me2K9

histone H3 dimethylated at lysine 9

H3me3K9

histone H3 trimethylated at lysine 9

H4acK12

histone H4 acetylated at lysine 12

HDAC

histone deacetylase

HP1

heterochromatin protein 1

HPLC

high-performance liquid chromatography

KCM buffer

120 mM KCl, 20 mM NaCl, 10 mM Tris-HCl, pH 7.7, 0.1% Triton X-100

MEL

mouse erythroleukemia cells

PBS

phosphate-buffered saline

RSB

reticulocyte standard buffer (10 mM NaCl, 3 mM MgCl2, 10 mM Hepes, pH 7.5)

SDS-PAGE

sodium dodecyl sulfate–polyacrylamide gel electrophoresis

TSA

trichostatin A

Notes

Acknowledgments

We are grateful to Drs. P. Singh (Borstel, Germany), D. Tremethick (Canberra, Australia), and N. Chaudhary (Woodlands, TX, USA) for their kind gifts of antibodies against HP1, H2A.Z, and lamins A/C and B. Supported in part by National Institutes of Health Grants DK32094, DK56267, DK59079, and CA084214; National Science Foundation grant MCB-0615536, and by the Director, Office of Health and Environment Research Division, US Department of Energy, under Contract DE-AC03-76SF00098; and by Merit Review Award from the Department of Veteran Affairs.

Supplementary material

10577_2008_9005_MOESM1_ESM.doc (32 kb)
Tab1 (DOC 32.5 kb)

References

  1. Adkins NL, Watts M, Georgel PT (2004) To the 30-nm chromatin fiber and beyond. Biochim Biophys Acta 1677:12–23PubMedGoogle Scholar
  2. Bannister AJ, Schneider R, Myers FA, Thorne AW, Crane-Robinson C, Kouzarides T (2005) Spatial distribution of Di- and tri-methyl lysine 36 of histone H3 at active genes. J Biol Chem 280:17732–17736PubMedCrossRefGoogle Scholar
  3. Bates DL, Thomas JO (1981) Histones H1 and H5: one or two molecules per nucleosome. Nucleic Acids Res 9:5883–5894PubMedCrossRefGoogle Scholar
  4. Bernstein E, Allis CD (2005) RNA meets chromatin. Genes Dev 19:1635–1655PubMedCrossRefGoogle Scholar
  5. Brero A, Easwaran HP, Nowak D et al (2005) Methyl CpG-binding proteins induce large-scale chromatin reorganization during terminal differentiation. J Cell Biol 169:733–743PubMedCrossRefGoogle Scholar
  6. Brown KE, Guest SS, Smale ST, Hahm K, Merkenschlager M, Fisher AG (1997) Association of transcriptionally silent genes with Ikaros complexes at centromeric heterochromatin. Cell 91:845–854PubMedCrossRefGoogle Scholar
  7. Bulynko YA, Hsing LC, Mason RW, Tremethick DJ, Grigoryev SA (2006) Cathepsin L stabilizes the histone modification landscape on the Y chromosome and pericentromeric heterochromatin. Mol Cell Biol 26:4172–4184PubMedCrossRefGoogle Scholar
  8. Chaudhary N, Courvalin JC (1993) Stepwise reassembly of the nuclear envelope at the end of mitosis. J Cell Biol 122:295–306PubMedCrossRefGoogle Scholar
  9. Cho HH, Park HT, Kim YJ, Bae YC, Suh KT, Jung JS (2005) Induction of osteogenic differentiation of human mesenchymal stem cells by histone deacetylase inhibitors. J Cell Biochem 96:533–542PubMedCrossRefGoogle Scholar
  10. Claus R, Lubbert M (2003) Epigenetic targets in hematopoietic malignancies. Oncogene 22:6489–6496PubMedCrossRefGoogle Scholar
  11. Cowell IG, Aucott R, Mahadevaiah SK et al (2002) Heterochromatin, HP1 and methylation at lysine 9 of histone H3 in animals. Chromosoma 111:22–36PubMedCrossRefGoogle Scholar
  12. Eissenberg JC, Elgin SC (2000) The HP1 protein family: getting a grip on chromatin. Curr Opin Genet Dev 10:204–210PubMedCrossRefGoogle Scholar
  13. Esteller M (2006) Epigenetics provides a new generation of oncogenes and tumour-suppressor genes. Br J Cancer 94:179–183PubMedCrossRefGoogle Scholar
  14. Fan JY, Rangasamy D, Luger K, Tremethick DJ (2004) H2A.Z alters the nucleosome surface to promote HP1alpha-mediated chromatin fiber folding. Mol Cell 16:655–661PubMedCrossRefGoogle Scholar
  15. Feinberg AP, Ohlsson R, Henikoff S (2006) The epigenetic progenitor origin of human cancer. Nat Rev Genet 7:21–33PubMedCrossRefGoogle Scholar
  16. Felsenfeld G, Burgess-Beusse B, Farrell C et al (2004) Chromatin boundaries and chromatin domains. Cold Spring Harb Symp Quant Biol 69:245–250PubMedCrossRefGoogle Scholar
  17. Francastel C, Schubeler D, Martin DI, Groudine M (2000) Nuclear compartmentalization and gene activity. Nat Rev Mol Cell Biol 1:137–143PubMedCrossRefGoogle Scholar
  18. Frenster JH (1974) Ultrastructure and function of heterochromatin and euchromatin. In: Busch H, ed. The Cell Nucleus 1:565–581. Academic Press, New YorkGoogle Scholar
  19. Gilbert N, Boyle S, Sutherland H et al (2003) Formation of facultative heterochromatin in the absence of HP1. EMBO J 22:5540–5550PubMedCrossRefGoogle Scholar
  20. Greaves IK, Rangasamy D, Devoy M, Marshall Graves JA, Tremethick DJ (2006) The X and Y chromosomes assemble into H2A.Z, containing facultative heterochromatin, following meiosis. Mol Cell Biol 26:5394–5405PubMedCrossRefGoogle Scholar
  21. Grigoryev SA (2001) Higher-order folding of heterochromatin: protein bridges span the nucleosome arrays. Biochem Cell Biol 79:227–241PubMedCrossRefGoogle Scholar
  22. Grigoryev SA, Woodcock CL (1998) Chromatin structure in granulocytes. A link between tight compaction and accumulation of a heterochromatin-associated protein (MENT). J Biol Chem 273:3082–3089PubMedCrossRefGoogle Scholar
  23. Grigoryev SA, Solovieva VO, Spirin KS, Krasheninnikov IA (1992) A novel nonhistone protein (MENT) promotes nuclear collapse at the terminal stage of avian erythropoiesis. Exp Cell Res 198:268–275PubMedCrossRefGoogle Scholar
  24. Grigoryev SA, Nikitina T, Pehrson JR, Singh PB, Woodcock CL (2004) Dynamic relocation of epigenetic chromatin markers reveals an active role of constitutive heterochromatin in the transition from proliferation to quiescence. J Cell Sci 117:6153–6162PubMedCrossRefGoogle Scholar
  25. Grigoryev SA, Bulynko YA, Popova EY (2006) The end adjusts the means: heterochromatin remodelling during terminal cell differentiation. Chromosome Res 14:53–69PubMedCrossRefGoogle Scholar
  26. Hebbes TR, Clayton AL, Thorne AW, Crane-Robinson C (1994) Core histone hyperacetylation co-maps with generalized DNase I sensitivity in the chicken beta-globin chromosomal domain. EMBO J 13:1823–1830PubMedGoogle Scholar
  27. Hennig W (1999) Heterochromatin. Chromosoma 108:1–9PubMedCrossRefGoogle Scholar
  28. Heo K, Kim B, Kim K et al (2007) Isolation and characterization of proteins associated with histone H3 tails in vivo. J Biol Chem 282:15476–15483PubMedCrossRefGoogle Scholar
  29. Hilwig I, Gropp A (1972) Staining of constitutive heterochromatin in mammalian chromosomes with a new fluorochrome. Exp Cell Res 75:122–126PubMedCrossRefGoogle Scholar
  30. Huisinga KL, Brower-Toland B, Elgin SC (2006) The contradictory definitions of heterochromatin: transcription and silencing. Chromosoma 115:110–122PubMedCrossRefGoogle Scholar
  31. Irving JA, Shushanov SS, Pike RN et al (2002) Inhibitory activity of a heterochromatin-associated serpin (MENT) against papain-like cysteine proteinases affects chromatin structure and blocks cell proliferation. J Biol Chem 277:13192–13201PubMedCrossRefGoogle Scholar
  32. Istomina NE, Shushanov SS, Springhetti EM et al (2003) Insulation of the chicken β-globin chromosomal domain from a chromatin-condensing protein, MENT. Mol Cell Biol 23:6455–6468PubMedCrossRefGoogle Scholar
  33. Jenuwein T, Allis CD (2001) Translating the histone code. Science 293:1074–1080PubMedCrossRefGoogle Scholar
  34. Kelley LL, Koury MJ, Bondurant MC, Koury ST, Sawyer ST, Wickrema A (1993) Survival or death of individual proerythroblasts results from differing erythropoietin sensitivities: a mechanism for controlled rates of erythrocyte production. Blood 82:2340–2352PubMedGoogle Scholar
  35. Koury MJ, Sawyer ST, Bondurant MC (1984) Splenic erythroblasts in anemia-inducing Friend disease: a source of cells for studies of erythropoietin-mediated differentiation. J Cell Physiol 121:526–532PubMedCrossRefGoogle Scholar
  36. Koury ST, Koury MJ, Bondurant MC (1988) Morphological changes in erythroblasts during erythropoietin-induced terminal differentiation in vitro. Exp Hematol 16:758–763PubMedGoogle Scholar
  37. Koury ST, Koury MJ, Bondurant MC (1989) Cytoskeletal distribution and function during the maturation and enucleation of mammalian erythroblasts. J Cell Biol 109:3005–3013PubMedCrossRefGoogle Scholar
  38. Koury MJ, Park DJ, Martincic D et al (1997) Folate deficiency delays the onset but increases the incidence of leukemia in Friend virus-infected mice. Blood 90:4054–4061PubMedGoogle Scholar
  39. Koutzamani E, Loborg H, Sarg B, Lindner HH, Rundquist I (2002) Linker histone subtype composition and affinity for chromatin in situ in nucleated mature erythrocytes. J Biol Chem 277:44688–44694PubMedCrossRefGoogle Scholar
  40. Krauss SW, Lo AJ, Short SA, Koury MJ, Mohandas N, Chasis JA (2005) Nuclear substructure reorganization during late-stage erythropoiesis is selective and does not involve caspase cleavage of major nuclear substructural proteins. Blood 106:2200–2205PubMedCrossRefGoogle Scholar
  41. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685PubMedCrossRefGoogle Scholar
  42. Lee G, Spring FA, Parsons SF et al (2003) Novel secreted isoform of adhesion molecule ICAM-4: potential regulator of membrane-associated ICAM-4 interactions. Blood 101:1790–1797PubMedCrossRefGoogle Scholar
  43. Li Y, Danzer JR, Alvarez P, Belmont AS, Wallrath LL (2003) Effects of tethering HP1 to euchromatic regions of the Drosophila genome. Development 130:1817–1824PubMedCrossRefGoogle Scholar
  44. Litt MD, Simpson M, Gaszner M, Allis CD, Felsenfeld G (2001a) Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus. Science 293:2453–2455CrossRefGoogle Scholar
  45. Litt MD, Simpson M, Recillas-Targa F, Prioleau MN, Felsenfeld G (2001b) Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci. EMBO J 20:2224–2235CrossRefGoogle Scholar
  46. Maison C, Almouzni G (2004) HP1 and the dynamics of heterochromatin maintenance. Nat Rev Mol Cell Biol 5:296–304PubMedCrossRefGoogle Scholar
  47. Martelli AM, Billi AM, Gilmour RS, Manzoli L, Di Primio R, Cocco L (1992) Mouse and human hemopoietic cell lines of erythroid lineage express lamins A,B, C. Biochem Biophys Res Commun 185:271–276PubMedCrossRefGoogle Scholar
  48. McBryant SJ, Adams VH, Hansen JC (2006) Chromatin architectural proteins. Chromosome Res 14:39–51PubMedCrossRefGoogle Scholar
  49. Peterson DG, Stack SM, Healy JL, Donohoe BS, Anderson LK (1994) The relationship between synaptonemal complex length and genome size in four vertebrate classes (Osteicthyes, Reptilia, Aves, Mammalia). Chromosome Res 2:153–162PubMedCrossRefGoogle Scholar
  50. Popova EY, Claxton DF, Lukasova E, Bird PI, Grigoryev SA (2006) Epigenetic heterochromatin markers distinguish terminally differentiated leukocytes from incompletely differentiated leukemia cells in human blood. Exp Hematol 34:453–462PubMedCrossRefGoogle Scholar
  51. Rangasamy D, Berven L, Ridgway P, Tremethick DJ (2003) Pericentric heterochromatin becomes enriched with H2A.Z during early mammalian development. EMBO J 22:1599–1607PubMedCrossRefGoogle Scholar
  52. Richards EJ, Elgin SC (2002) Epigenetic codes for heterochromatin formation and silencing: rounding up the usual suspects. Cell 108:489–500PubMedCrossRefGoogle Scholar
  53. Schubeler D, Francastel C, Cimbora DM, Reik A, Martin DI, Groudine M (2000) Nuclear localization and histone acetylation: a pathway for chromatin opening and transcriptional activation of the human beta-globin locus. Genes Dev 14:940–950PubMedGoogle Scholar
  54. Shahbazian MD, Grunstein M (2007) Functions of site-specific histone acetylation and deacetylation. Annu Rev Biochem 76:75–100PubMedCrossRefGoogle Scholar
  55. Shogren-Knaak M, Ishii H, Sun JM, Pazin MJ, Davie JR, Peterson CL (2006) Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science 311:844–847PubMedCrossRefGoogle Scholar
  56. Singh PB, Georgatos SD (2002) HP1: facts, open questions, and speculation. J Struct Biol 140:10–16PubMedCrossRefGoogle Scholar
  57. Springhetti EM, Istomina NE, Whisstock JC, Nikitina TV, Woodcock CL, Grigoryev SA (2003) Role of the M-loop and reactive center loop domains in the folding and bridging of nucleosome arrays by MENT. J Biol Chem 278:43384–43393PubMedCrossRefGoogle Scholar
  58. Su RC, Brown KE, Saaber S, Fisher AG, Merkenschlager M, Smale ST (2004a) Dynamic assembly of silent chromatin during thymocyte maturation. Nat Genet 36:502–506PubMedCrossRefGoogle Scholar
  59. Su RC, Brown KE, Saaber S, Fisher AG, Merkenschlager M, Smale ST (2004b) Dynamic assembly of silent chromatin during thymocyte maturation. Nat Genet 36:502–506PubMedCrossRefGoogle Scholar
  60. Sung MT, Harford J, Bundman M, Vidalakas G (1977) Metabolism of histones in avian erythroid cells. Biochemistry 16:279–285PubMedCrossRefGoogle Scholar
  61. Terranova R, Sauer S, Merkenschlager M, Fisher AG (2005) The reorganisation of constitutive heterochromatin in differentiating muscle requires HDAC activity. Exp Cell Res 20:20Google Scholar
  62. Tse C, Sera T, Wolffe AP, Hansen JC (1998) Disruption of higher-order folding by core histone acetylation dramatically enhances transcription of nucleosomal arrays by RNA polymerase III. Mol Cell Biol 18:4629–4638PubMedGoogle Scholar
  63. Verreault A, Thomas JO (1993) Chromatin structure of the beta-globin chromosomal domain in adult chicken erythrocytes. Cold Spring Harb Symp Quant Biol 58:15–24PubMedGoogle Scholar
  64. Verschure PJ, van der Kraan I, de Leeuw W et al (2005) In vivo HP1 targeting causes large-scale chromatin condensation and enhanced histone lysine methylation. Mol Cell Biol 25:4552–4564PubMedCrossRefGoogle Scholar
  65. Watamoto K, Towatari M, Ozawa Y et al (2003) Altered interaction of HDAC5 with GATA-1 during MEL cell differentiation. Oncogene 22:9176–9184PubMedCrossRefGoogle Scholar
  66. Weintraub H (1978) The nucleosome repeat length increases during erythropoiesis in the chick. Nucleic Acids Res 5:1179–1188PubMedCrossRefGoogle Scholar
  67. Weintraub H (1984) Histone-H1-dependent chromatin superstructures and the suppression of gene activity. Cell 38:17–27PubMedCrossRefGoogle Scholar
  68. Woodcock CL, Dimitrov S (2001) Higher order structure of chromatin and chromosomes. Curr Opin in Gen Dev 11:130–135CrossRefGoogle Scholar
  69. Woodcock CL, Skoultchi AI, Fan Y (2006) Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length. Chromosome Res 14:17–25PubMedCrossRefGoogle Scholar
  70. Wright JM, Wiersma PA, Dixon GH (1987) Use of protein blotting to study the DNA-binding properties of histone H1 and H1 variants. Eur J Biochem 168:281–285PubMedCrossRefGoogle Scholar
  71. Yellajoshyula D, Brown DT (2006) Global modulation of chromatin dynamics mediated by dephosphorylation of linker histone H1 is necessary for erythroid differentiation. Proc Natl Acad Sci USA 103:18568–18573PubMedCrossRefGoogle Scholar
  72. Zhang CL, McKinsey TA, Olson EN (2002) Association of class II histone deacetylases with heterochromatin protein 1: potential role for histone methylation in control of muscle differentiation. Mol Cell Biol 22:7302–7312PubMedCrossRefGoogle Scholar
  73. Zlatanova J, Leuba SH (2003) Chromatin fibers, one-at-a-time. J Mol Biol 331:1–19PubMedCrossRefGoogle Scholar

Copyright information

© Springer Science+Business Media B.V. 2009

Authors and Affiliations

  • Evgenya Y. Popova
    • 1
  • Sharon Wald Krauss
    • 2
  • Sarah A. Short
    • 2
  • Gloria Lee
    • 2
  • Jonathan Villalobos
    • 2
  • Joan Etzell
    • 3
  • Mark J. Koury
    • 4
  • Paul A. Ney
    • 5
  • Joel Anne Chasis
    • 2
  • Sergei A. Grigoryev
    • 1
  1. 1.Biochemistry and Molecular Biology, College of MedicinePenn State UniversityHersheyUSA
  2. 2.Life Sciences DivisionUniversity of California, Lawrence Berkeley National LaboratoryBerkeleyUSA
  3. 3.Laboratory MedicineUniversity of CaliforniaSan FranciscoUSA
  4. 4.Medicine/HematologyTN Valley Healthcare System and Vanderbilt UniversityNashvilleUSA
  5. 5.St. Jude Children’s Research HospitalMemphisUSA

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