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A new Rhizobium species isolated from the water of a crater lake, description of Rhizobium aquaticum sp. nov.

  • István Máthé
  • Erika Tóth
  • Anikó Mentes
  • Attila Szabó
  • Károly Márialigeti
  • Peter Schumann
  • Tamás Felföldi
Original Paper
  • 74 Downloads

Abstract

A novel isolate, strain SA-276T, was isolated from the water of Lake St. Ana, a crater lake which is located in Romania. Phylogenetic analysis based on the 16S rRNA gene revealed that the new strain is a member of the family Rhizobiaceae, showing a high pairwise similarity value (97.65%) to Rhizobium tubonense CCBAU 85046T (= DSM 25379T), Rhizobium leguminosarum USDA 2370T (= LMG 14904T), Rhizobium anhuiense CCBAU 23252T and Rhizobium laguerreae FB206T. Cells of strain SA-276T were rod-shaped, motile, oxidase negative and weakly catalase positive. The predominant fatty acids were C18:1ω7c and cyclo C19:0ω8c, the major respiratory quinones were Q-10 and Q-9, and the main polar lipids were phosphatidylmonomethylethanolamine, phosphatidylglycerol and phosphatidylcholine. The G + C content of the genomic DNA of strain SA-276T was 60.8 mol%. The novel isolate can be distinguished from the closest related type strain R. tubonense DSM 25379T based on its broader substrate specificity and positive trypsin enzyme activity. On the basis of the phenotypic, chemotaxonomic and molecular data, strain SA-276T is considered to represent a new species, for which the name Rhizobium aquaticum sp. nov. is proposed. The type strain is SA-276T (= DSM 29780T = JCM 31760T).

Keywords

Rhizobium Crater lake Alphaproteobacteria Rhizobiacaeae 

Abbreviations

PC

Phosphatidylcholine

PG

Phosphatidylglycerol

PMME

Phosphatidylmonomethylethanolamine

Notes

Acknowledgements

The authors are thankful to Mihály Koncz, Judit Kosztik, Zsuzsa Kéki, Sára Szuróczki and Anikó Lajosné Balogh for their technical assistance. The authors wish to thank to Tisza Bell for correction of English grammar. T. F. was supported by the New National Excellence Program of the Ministry of Human Capacities, Hungary (Grant Number: ÚNKP-17-4-III-ELTE-111).

Compliance with ethical standards

Conflict of interest

The authors declare that there are no conflicts of interest.

Ethical approval

The article does not contain any studies with humans or animals.

Supplementary material

10482_2018_1110_MOESM1_ESM.pdf (681 kb)
Supplementary material 1 (PDF 681 kb)

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Copyright information

© Springer International Publishing AG, part of Springer Nature 2018

Authors and Affiliations

  1. 1.Department of BioengineeringSapientia Hungarian University of TransylvaniaMiercurea CiucRomania
  2. 2.Department of MicrobiologyELTE Eötvös Loránd UniversityBudapestHungary
  3. 3.Leibniz Institute DSMZ - German Collection of Microorganisms and Cell CulturesBraunschweigGermany

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