Skip to main content
Log in

Aquimarina seongsanensis sp. nov., isolated from sea water

  • Original Paper
  • Published:
Antonie van Leeuwenhoek Aims and scope Submit manuscript

Abstract

An orange, rod-shaped, gliding bacterium, designated strain CBA3208T, was isolated from sea water of Jeju Island, Republic of Korea. Cells were observed to be Gram-stain negative, strictly aerobic, catalase positive and oxidase negative and to hydrolyse starch, gelatin, and Tweens 40 and 80. The major fatty acids were identified as iso-C15:0, iso-C17:0 3-OH, and iso-C15:1 G. The only isoprenoid quinone was found to be menaquinone-6 (MK-6) and the major polar lipids were identified as phosphatidylethanolamine, two aminolipids and four unidentified polar lipids. The DNA G+C content of strain CBA3208T was determined to be 34.9 mol%. Strain CBA3208T is considered to represent a novel species of the genus Aquimarina, for which the name Aquimarina seongsanensis sp. nov. is proposed based on this polyphasic taxonomic analysis. The type strain is CBA3208T (=KACC 17667T =JCM 19529T).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  • Barrow GI, Feltham RKA (eds) (1993) Cowan and steel’s manual for the identification of medical bacteria, 3rd edn. Cambridge University Press, Cambridge

    Google Scholar 

  • Bernardet JF, Nakagawa Y, Holmes B, Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002) Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52(3):1049–1070

    CAS  PubMed  Google Scholar 

  • Bowman JP (2000) Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50(5):1861–1868

    Article  CAS  PubMed  Google Scholar 

  • Chen WM, Sheu FS, Sheu SY (2012) Aquimarina salinaria sp. nov., a novel algicidal bacterium isolated from a saltpan. Arch Microbiol 194(2):103–112

    Article  CAS  PubMed  Google Scholar 

  • CLSI (2009) Performance standards for antimicrobial susceptibility testing; 19th informational supplement, CLSI document M100-S19 (ISBN 1-56238-690-5). Clinical and Laboratory Standards Institute, Wayne

    Google Scholar 

  • Collins MD (1994) Isoprenoid quinones. In: Goodfellow M, O’DonnellChemical AG (eds) Methods in prokaryotic systematics. Wiley, Chichester, pp 265–309

    Google Scholar 

  • De Beer EJ, Sherwood MB (1945) The paper-disc agar-plate method for the assay of antibiotic substances. J Bacteriol 50(4):459–467

    PubMed  PubMed Central  Google Scholar 

  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39(4):783–791

    Article  PubMed  Google Scholar 

  • Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20(4):406–416

    Article  Google Scholar 

  • Kennedy J, Margassery LM, O’Leary ND, O’Gara F, Morrissey J, Dobson AD (2014) Aquimarina amphilecti sp. nov., isolated from the sponge Amphilectus fucorum. Int J Syst Evol Microbiol 64(2):501–505

    Article  CAS  PubMed  Google Scholar 

  • Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH et al (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62(3):716–721

    Article  CAS  PubMed  Google Scholar 

  • Komagata K, Suzuki K (1987) Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–207

    Article  CAS  Google Scholar 

  • Lányí B (1987) Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19:1–67

    Google Scholar 

  • Lee JK, Cha I-T, Kim M, Choi B-G, Song HS, Kim JY, Roh SW, Lee S-J (2017) Aquimarina versatilis sp. nov., isolated from seashore sand, and emended description of the genus Aquimarina. Int J Syst Evol Microbiol 67(2):411–416

    Article  PubMed  Google Scholar 

  • Li G, Lai Q, Sun F, Liu X, Xie Y, Du Y, Li G, Shao Z (2014a) Aquimarina atlantica sp. nov., isolated from surface seawater of the Atlantic Ocean. Antonie van Leeuwenhoek 106(2):293–300

    Article  CAS  PubMed  Google Scholar 

  • Li X, Wang L, Huang H, Lai Q, Shao Z (2014b) Aquimarina penaei sp. nov., isolated from intestinal tract contents of Pacific white shrimp, Penaeus vannamei. Antonie van Leeuwenhoek 106(6):1223–1229

    Article  PubMed  Google Scholar 

  • Lin B, Lu G, Zheng Y, Xie W, Li S, Hu Z (2012) Aquimarina agarilytica sp. nov., an agarolytic species isolated from a red alga. Int J Syst Evol Microbiol 62(4):869–873

    Article  CAS  PubMed  Google Scholar 

  • McCammon SA, Bowman JP (2000) Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov., and Flavobacterium xanthum sp. nov., nom. rev. and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov. Int J Syst Evol Microbiol 50(3):1055–1063

    Article  CAS  PubMed  Google Scholar 

  • MIDI (1999) Sherlock microbial identification system operating manual, version 3.0. MIDI Inc, Newark

    Google Scholar 

  • Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2(5):233–241

    Article  CAS  Google Scholar 

  • Miyazaki M, Nagano Y, Fujiwara Y, Hatada Y, Nogi Y (2010) Aquimarina macrocephali sp. nov., isolated from sediment adjacent to sperm whale carcasses. Int J Syst Evol Microbiol 60(10):2298–2302

    Article  CAS  PubMed  Google Scholar 

  • Nedashkovskaya OI, Kim SB, Lysenko AM, Frolova GM, Mikhailov VV, Lee KH, Bae KS (2005) Description of Aquimarina muelleri gen. nov., sp. nov., and proposal of the reclassification of [Cytophaga] latercula Lewin 1969 as Stanierella latercula gen. nov., comb. nov. Int J Syst Evol Microbiol 55(1):225–229

    Article  CAS  PubMed  Google Scholar 

  • Nedashkovskaya OI, Vancanneyt M, Christiaens L, Kalinovskaya NI, Mikhailov VV, Swings J (2006) Aquimarina intermedia sp. nov., reclassification of Stanierella latercula (Lewin 1969) as Aquimarina latercula comb. nov. and Gaetbulimicrobium brevivitae Yoon et al. 2006 as Aquimarina brevivitae comb. nov. and emended description of the genus Aquimarina. Int J Syst Evol Microbiol 56(9):2037–2041

    Article  CAS  PubMed  Google Scholar 

  • Oh YS, Kahng HY, Lee YS, Yoon BJ, Lim SB, Jung JS, Oh DC, Lee DH (2010) Aquimarina litoralis sp. nov., isolated from a coastal seawater. J Microbiol 48(4):433–437

    Article  CAS  PubMed  Google Scholar 

  • Park SC, Choe HN, Baik KS, Seong CN (2012) Aquimarina mytili sp. nov., isolated from the gut microflora of a mussel, Mytilus coruscus, and emended description of Aquimarina macrocephali. Int J Syst Evol Microbiol 62(8):1974–1979

    Article  CAS  PubMed  Google Scholar 

  • Park SC, Choe HN, Baik KS, Seong CN (2013) Aquimarina gracilis sp. nov., isolated from the gut microflora of a mussel, Mytilus coruscus, and emended description of Aquimarina spongiae. Int J Syst Evol Microbiol 63(5):1782–1787

    Article  CAS  PubMed  Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4(4):406–425

    CAS  PubMed  Google Scholar 

  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol 30(12):2725–2729

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tindall BJ, Rosselló-Móra R, Busse HJ, Ludwig W, Kämpfer P (2010) Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60(1):249–266

    Article  CAS  PubMed  Google Scholar 

  • Tittsler RP, Sandholzer LA (1936) The use of semi-solid agar for the detection of bacterial motility. J Bacteriol 31(6):575–580

    CAS  PubMed  PubMed Central  Google Scholar 

  • Wang Y, Ming H, Guo W, Chen H, Zhou C (2016) Aquimarina aggregata sp. nov., isolated from seawater. Int J Syst Evol Microbiol 66(9):3406–3412

    Article  PubMed  Google Scholar 

  • Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE et al (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37(4):463–464

    Article  Google Scholar 

  • Yang SJ, Cho JC (2008) Gaetbulibacter marinus sp. nov., isolated from coastal seawater, and emended description of the genus Gaetbulibacter. Int J Syst Evol Microbiol 58(2):315–318

    Article  CAS  PubMed  Google Scholar 

  • Yi H, Chun J (2011) Aquimarina addita sp. nov., isolated from seawater. Int J Syst Evol Microbiol 61(10):2445–2449

    Article  CAS  PubMed  Google Scholar 

  • Yoon BJ, You HS, Lee DH, Oh DC (2011) Aquimarina spongiae sp. nov., isolated from marine sponge Halichondria oshoro. Int J Syst Evol Microbiol 61(2):417–421

    Article  CAS  PubMed  Google Scholar 

  • Yu T, Yin Q, Song X, Zhao R, Shi X, Zhang XH (2013) Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri. Int J Syst Evol Microbiol 63(4):1235–1240

    Article  CAS  PubMed  Google Scholar 

  • Yu T, Zhang Z, Fan X, Shi X, Zhang XH (2014) Aquimarina megaterium sp. nov., isolated from seawater. Int J Syst Evol Microbiol 64(1):122–127

    Article  CAS  PubMed  Google Scholar 

  • Zhang Z, Yu T, Xu T, Zhang XH (2014) Aquimarina pacifica sp. nov., isolated from seawater. Int J Syst Evol Microbiol 64(6):1991–1997

    Article  CAS  PubMed  Google Scholar 

  • Zheng Y, Wang Y, Liu Y, Li W, Yu M, Zhang XH (2016) Aquimarina hainanensis sp. nov., isolated from diseased Pacific white shrimp Litopenaeus vannamei larvae. Int J Syst Evol Microbiol 66(1):70–75

    Article  CAS  PubMed  Google Scholar 

  • Zhou YX, Wang C, Du ZJ, Chen GJ (2015) Aquimarina agarivorans sp. nov., a genome-sequenced member of the class Flavobacteriia isolated from Gelidium amansii. Int J Syst Evol Microbiol 65(8):2684–2688

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

S-J. Lee is grateful for a grant from the Kyung Hee University (20151262). S.W. Roh is grateful for project funding (C36703) from the Center for Analytical Research of Disaster Science at the Korea Basic Science Institute.

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Seong Woon Roh or Sung-Jae Lee.

Ethics declarations

Conflict of interest

The authors have declared no conflict of interest.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 10 kb)

Supplementary material 2 (PPTX 1372 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Oh, Y., Choi, Bg., Kim, J.Y. et al. Aquimarina seongsanensis sp. nov., isolated from sea water. Antonie van Leeuwenhoek 110, 1019–1025 (2017). https://doi.org/10.1007/s10482-017-0875-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10482-017-0875-x

Keywords

Navigation