Two promising alkaline β-glucosidases isolated by functional metagenomics from agricultural soil, including one showing high tolerance towards harsh detergents, oxidants and glucose
- 599 Downloads
- 14 Citations
Abstract
New β-glucosidase activities were identified by screening metagenomic libraries constructed with DNA isolated from the topsoil of a winter wheat field. Two of the corresponding proteins, displaying an unusual preference for alkaline conditions, were selected for purification by Ni-NTA chromatography. AS-Esc6, a 762-amino-acid enzyme belonging to glycoside hydrolase family 3, proved to be a mesophilic aryl-β-glucosidase with maximal activity around pH 8 and 40 °C. A similar pH optimum was found for AS-Esc10, a 475-amino-acid GH1-family enzyme, but this enzyme remained significantly active across a wider pH range and was also markedly more stable than AS-Esc6 at pH greater than 10. AS-Esc10 was found to degrade cellobiose and diverse aryl glycosides, with an optimal temperature of 60 °C and good stability up to 50 °C. Unlike AS-Esc6, which showed a classically low inhibitory constant for glucose (14 mM), AS-Esc10 showed enhanced activity in the presence of molar concentrations of glucose. AS-Esc10 was highly tolerant to hydrogen peroxide and also to sodium dodecyl sulfate, this being indicative of kinetic stability. This unique combination of properties makes AS-Esc10 a particularly promising candidate whose potential in biotechnological applications is worth exploring further.
Keywords
Alkaline enzyme β-Glucosidase Detergent Functional metagenomics Glucose toleranceNotes
Acknowledgments
We thank Benjamin Dubois for technical assistance. Sophie Biver is a Postdoctoral Researcher of the Fonds National de la Recherche Scientifique (F.R.S-FNRS).
References
- 1.Bhat MK (2000) Cellulases and related enzymes in biotechnology. Biotechnol Adv 18(5):355–383PubMedCrossRefGoogle Scholar
- 2.Bhatia Y, Mishra S, Bisaria VS (2002) Microbial beta-glucosidases: cloning, properties, and applications. Crit Rev Biotechnol 22(4):375–407. doi: 10.1080/07388550290789568 PubMedCrossRefGoogle Scholar
- 3.Biver S, Vandenbol M (2013) Characterization of three new carboxylic ester hydrolases isolated by functional screening of a forest soil metagenomic library. J Ind Microbiol Biotechnol 40(2):191–200. doi: 10.1007/s10295-012-1217-7 PubMedCrossRefGoogle Scholar
- 4.Cunningham EL, Jaswal SS, Sohl JL, Agard DA (1999) Kinetic stability as a mechanism for protease longevity. Proc Natl Acad Sci USA 96(20):11008–11014PubMedCrossRefGoogle Scholar
- 5.Daniel R (2004) The soil metagenome–a rich resource for the discovery of novel natural products. Curr Opin Biotechnol 15(3):199–204. doi: 10.1016/j.copbio.2004.04.005 PubMedCrossRefGoogle Scholar
- 6.Eriksson T, Börjesson J, Tjerneld F (2002) Mechanism of surfactant effect in enzymatic hydrolysis of lignocellulose. Enzyme Microb Technol 31(3):353–364CrossRefGoogle Scholar
- 7.Fan H-X, Miao L-L, Liu Y, Liu H-C, Liu Z-P (2011) Gene cloning and characterization of a cold-adapted β-glucosidase belonging to glycosyl hydrolase family 1 from a psychrotolerant bacterium Micrococcus antarcticus. Enzyme Microb Technol 49(1):94–99. doi: 10.1016/j.enzmictec.2011.03.001 PubMedCrossRefGoogle Scholar
- 8.Gudiksen KL, Gitlin I, Whitesides GM (2006) Differentiation of proteins based on characteristic patterns of association and denaturation in solutions of SDS. Proc Natl Acad Sci USA 103(21):7968–7972. doi: 10.1073/pnas.0602816103 PubMedCrossRefGoogle Scholar
- 9.Harvey AJ, Hrmova M, De Gori R, Varghese JN, Fincher GB (2000) Comparative modeling of the three-dimensional structures of family 3 glycoside hydrolases. Proteins 41(2):257–269PubMedCrossRefGoogle Scholar
- 10.Hill AD, Reilly PJ (2008) Computational analysis of glycoside hydrolase family 1 specificities. Biopolymers 89(11):1021–1031. doi: 10.1002/bip.21052 PubMedCrossRefGoogle Scholar
- 11.Jabbour D, Klippel B, Antranikian G (2012) A novel thermostable and glucose-tolerant β-glucosidase from Fervidobacterium islandicum. Appl Microbiol Biotechnol 93(5):1947–1956. doi: 10.1007/s00253-011-3406-0 PubMedCrossRefGoogle Scholar
- 12.Joo H-S, Chang C-S (2005) Oxidant and SDS-stable alkaline protease from a halo-tolerant Bacillus clausii I-52: enhanced production and simple purification. J Appl Microbiol 98(2):491–497. doi: 10.1111/j.1365-2672.2004.02464.x PubMedCrossRefGoogle Scholar
- 13.Kalyani D, Lee K-M, Tiwari MK, Ramachandran P, Kim H, Kim I-W, Jeya M, Lee J-K (2012) Characterization of a recombinant aryl β-glucosidase from Neosartorya fischeri NRRL181. Appl Microbiol Biotechnol 94(2):413–423. doi: 10.1007/s00253-011-3631-6 PubMedCrossRefGoogle Scholar
- 14.Karnaouri A, Topakas E, Paschos T, Taouki I, Christakopoulos P (2013) Cloning, expression and characterization of an ethanol tolerant GH3 β-glucosidase from Myceliophthora thermophila. PeerJ 1:e46. doi: 10.7717/peerj.46 PubMedCentralPubMedCrossRefGoogle Scholar
- 15.Kaya F, Heitmann JA Jr, Joyce TW (1995) Influence of surfactants on the enzymatic hydrolysis of xylan and cellulose. TAPPI J 78(10):150–157Google Scholar
- 16.Kuhad RC, Gupta R, Singh A (2011) Microbial cellulases and their industrial applications. Enzyme Res 2011:280696. doi: 10.4061/2011/280696 PubMedCentralPubMedCrossRefGoogle Scholar
- 17.Kumar R, Singh S, Singh OV (2008) Bioconversion of lignocellulosic biomass: biochemical and molecular perspectives. J Ind Microbiol Biotechnol 35(5):377–391. doi: 10.1007/s10295-008-0327-8 PubMedCrossRefGoogle Scholar
- 18.Di Lauro B, Rossi M, Moracci M (2006) Characterization of a beta-glycosidase from the thermoacidophilic bacterium Alicyclobacillus acidocaldarius. Extremophiles 10(4):301–310. doi: 10.1007/s00792-005-0500-1 PubMedCrossRefGoogle Scholar
- 19.Li G, Jiang Y, Fan X, Liu Y (2012) Molecular cloning and characterization of a novel β-glucosidase with high hydrolyzing ability for soybean isoflavone glycosides and glucose-tolerance from soil metagenomic library. Bioresour Technol 123:15–22PubMedCrossRefGoogle Scholar
- 20.Lynd LR, Weimer PJ, van Zyl WH, Pretorius IS (2002) Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev 66(3):506–577PubMedCentralPubMedCrossRefGoogle Scholar
- 21.Manning M, Colón W (2004) Structural basis of protein kinetic stability: resistance to sodium dodecyl sulfate suggests a central role for rigidity and a bias toward beta-sheet structure. Biochemistry 43(35):11248–11254. doi: 10.1021/bi0491898 PubMedCrossRefGoogle Scholar
- 22.Matteotti C, Thonart P, Francis F, Haubruge E, Destain J, Brasseur C, Bauwens J, De Pauw E, Portetelle D, Vandenbol M (2011) New glucosidase activities identified by functional screening of a genomic DNA library from the gut microbiota of the termite Reticulitermes santonensis. Microbiol Res 166(8):629–642. doi: 10.1016/j.micres.2011.01.001 PubMedCrossRefGoogle Scholar
- 23.Pérez-Pons JA, Rebordosa X, Querol E (1995) Properties of a novel glucose-enhanced β-glucosidase purified from Streptomyces sp. (ATCC 11238). Biochim Biophys Acta 2:145–153CrossRefGoogle Scholar
- 24.Petersen TN, Brunak S, von Heijne G, Nielsen H (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8(10):785–786. doi: 10.1038/nmeth.1701 PubMedCrossRefGoogle Scholar
- 25.Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, Apweiler R, Lopez R (2005) InterProScan: protein domains identifier. Nucleic Acids Res 33(Suppl 2):W116–W120. doi: 10.1093/nar/gki442 PubMedCentralPubMedCrossRefGoogle Scholar
- 26.Rajasree KP, Mathew GM, Pandey A, Sukumaran RK (2013) Highly glucose tolerant β-glucosidase from Aspergillus unguis: NII 08123 for enhanced hydrolysis of biomass. J Ind Microbiol Biotechnol 40(9):967–975. doi: 10.1007/s10295-013-1291-5 PubMedCrossRefGoogle Scholar
- 27.Rather M, Mishra S (2013) β-Glycosidases: an alternative enzyme based method for synthesis of alkyl-glycosides. Sustain Chem Process 1(1):7. doi: 10.1186/2043-7129-1-7 CrossRefGoogle Scholar
- 28.Riou C, Salmon J-M, Vallier M-J, Gunata Z, Barre P (1998) Purification, characterization, and substrate specificity of a novel highly glucose-tolerant beta-glucosidase from Aspergillus oryzae. Appl Environ Microbiol 64(10):3607–3614PubMedCentralPubMedGoogle Scholar
- 29.Saha BC, Bothast RJ (1996) Production, purification, and characterization of a highly glucose-tolerant novel beta-glucosidase from Candida peltata. Appl Environ Microbiol 62(9):3165–3170PubMedCentralPubMedGoogle Scholar
- 30.Sanchez-Ruiz JM (2010) Protein kinetic stability. Biophys Chem 148(1–3):1–15. doi: 10.1016/j.bpc.2010.02.004 PubMedCrossRefGoogle Scholar
- 31.Schomburg I, Chang A, Placzek S, Söhngen C, Rother M, Lang M, Munaretto C, Ulas S, Stelzer M, Grote A, Scheer M, Schomburg D (2013) BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA. Nucleic Acids Res 41(Database issue):D764–D772. doi: 10.1093/nar/gks1049 PubMedCentralPubMedCrossRefGoogle Scholar
- 32.Seo D-J, Fujita H, Sakoda A (2011) Effects of a non-ionic surfactant, Tween 20, on adsorption/desorption of saccharification enzymes onto/from lignocelluloses and saccharification rate. Adsorption 17(5):813–822. doi: 10.1007/s10450-011-9340-8 CrossRefGoogle Scholar
- 33.Shah SR (2013) Chemistry and applications of cellulase in textile wet processing. Res J Eng Sci 2(7):1–5Google Scholar
- 34.Sørensen A, Lübeck M, Lübeck P, Ahring B (2013) Fungal beta-glucosidases: a bottleneck in industrial use of lignocellulosic materials. Biomolecules 3(3):612–631. doi: 10.3390/biom3030612 CrossRefGoogle Scholar
- 35.Steele HL, Jaeger KE, Daniel R, Streit WR (2009) Advances in recovery of novel biocatalysts from metagenomes. J Mol Microbiol Biotechnol 16(1–2):25–37. doi: 10.1159/000142892 PubMedCrossRefGoogle Scholar
- 36.Terra WR, Ferreira C (1994) Insect digestive enzymes: properties, compartmentalization and function. Comp Biochem Physiol B 109(1):1–62CrossRefGoogle Scholar
- 37.Teugjas H, Väljamäe P (2013) Selecting β-glucosidases to support cellulases in cellulose saccharification. Biotechnol Biofuels 6(1):105. doi: 10.1186/1754-6834-6-105 PubMedCentralPubMedCrossRefGoogle Scholar
- 38.Tsitsimpikou C, Christakopoulos P, Makropoulou M, Kekos D, Macris BJ, Kolisis FN (1997) Role of methanol on the catalytic behavior of β-glucosidase from Fusarium oxysporum. Biotechnol Lett 19(1):31–33. doi: 10.1023/A:1018306802099 CrossRefGoogle Scholar
- 39.Uchiyama T, Miyazaki K, Yaoi K (2013) Characterization of a novel β-glucosidase from a compost microbial metagenome with strong transglycosylation activity. J Biol Chem 288(25):18325–18334. doi: 10.1074/jbc.M113.471342 PubMedCrossRefGoogle Scholar
- 40.Wang Y, Li J, Xu Y (2011) Characterization of novel β-glucosidases with transglycosylation properties from Trichosporon asahii. J Agric Food Chem 59(20):11219–11227. doi: 10.1021/jf203693v PubMedCrossRefGoogle Scholar
- 41.Watt DK, Ono H, Hayashi K (1998) Agrobacterium tumefaciens beta-glucosidase is also an effective beta-xylosidase, and has a high transglycosylation activity in the presence of alcohols. Biochim Biophys Acta 1385(1):78–88PubMedCrossRefGoogle Scholar
- 42.Xu H, Xiong A-S, Zhao W, Tian Y-S, Peng R-H, Chen J-M, Yao Q-H (2011) Characterization of a glucose-, xylose-, sucrose-, and d-galactose-stimulated β-glucosidase from the alkalophilic bacterium Bacillus halodurans C-125. Curr Microbiol 62(3):833–839. doi: 10.1007/s00284-010-9766-3 PubMedCrossRefGoogle Scholar
- 43.Yan TR, Lin CL (1997) Purification and characterization of a glucose-tolerant beta-glucosidase from Aspergillus niger CCRC 31494. Biosci Biotechnol Biochem 61(6):965–970PubMedCrossRefGoogle Scholar
- 44.Zheng F, Huang J, Yin Y, Ding S (2013) A novel neutral xylanase with high SDS resistance from Volvariella volvacea: characterization and its synergistic hydrolysis of wheat bran with acetyl xylan esterase. J Ind Microbiol Biotechnol 40(10):1083–1093. doi: 10.1007/s10295-013-1312-4 PubMedCrossRefGoogle Scholar
- 45.Zhou J, Bao L, Chang L, Liu Z, You C, Lu H (2012) Beta-xylosidase activity of a GH3 glucosidase/xylosidase from yak rumen metagenome promotes the enzymatic degradation of hemicellulosic xylans. Lett Appl Microbiol 54(2):79–87. doi: 10.1111/j.1472-765X.2011.03175.x PubMedCrossRefGoogle Scholar
- 46.Zilz L, Rau M, Budag N, Scharf M, Cavaco-Paulo A, Andreaus J (2013) Nonionic surfactants and dispersants for biopolishing and stonewashing with Hypocrea jecorina cellulases. Color Technol 129(1):49–54. doi: 10.1111/cote.12003 CrossRefGoogle Scholar