Ichthyological Research

, 56:421 | Cite as

Phylogenetic position and generic status of the Japanese botiid loach

Short Report

Abstract

The phylogenetic position revealed by partial mtDNA sequence analysis supports the placement of the Japanese botiid loach into the genus Parabotia Dabry de Thiersant 1872 instead of Leptobotia Bleeker 1870; i.e., Parabotia curta (Temminck and Schlegel 1846) is its valid name.

Keywords

Botiidae Phylogeny Parabotia curta Leptobotia Mitochondrial DNA (mtDNA) 

Notes

Acknowledgments

We thank Akira Goto, Harumi Sakai, and Mikhail Nazarkin for providing Russian specimens, and Ryo Kakioka for help in DNA analysis. We also thank all individuals as well as national and local administrative officials who helped in this study. The collection of DNA tissue was conducted with permission from the Agency for Cultural Affairs and the Ministry of the Environment of Japan. This study was partly supported by the Keidanren Nature Conservation Fund, Grants-in-Aid from the Ministry of Education, Culture, Sports, Science and Technology of Japan (nos. 204924, 18570086, and 19405011), and the Fisheries Research Agency of Japan. T.A. was supported by research fellowships from the Japan Society for the Promotion of Science for young scientists.

References

  1. Aoyagi H (1957) General notes on the freshwater fishes of the Japanese Archipelago. Taishukan, TokyoGoogle Scholar
  2. Aoyama J, Watanabe S, Ishikawa S, Nishida M, Tsukamoto K (2000) Are morphological characters distinctive enough to discriminate between two species of freshwater eels, Anguilla celebesensis and A. interioris? Ichthyol Res 47:157–161CrossRefGoogle Scholar
  3. Berg LS (1907) Beschreibungen einiger neuer Fische aus dem Stromgebiete des Amur. Ezhegodnik. Zoologicheskogo Muzeya Imperatorskogo Akademii Nauk 12:418–423Google Scholar
  4. Bleeker P (1870) Description d’une espèce inédite de Botia de Chine et figures du Botia elongata et du Botia modesta. Verslagen en Mededeelingen der Koninklijke Akademie van Wetenschappen. Afdeling Natuurkunde (Ser 2) 4:254–256, pl 2Google Scholar
  5. Bogutskaya NG, Naseka AM, Shedko SV, Vasil’eva ED, Chereshnev IA (2008) The fishes of the Amur River: updated check-list and zoogeography. Ichthyol Explor Freshw 19:301–366Google Scholar
  6. Chen JX (1980) A study on the classification of the botoid fishes of China. Zool Res 1:3–26Google Scholar
  7. Dabry de Thiersant P (1872) La pisciculture et la pêche en Chine. Masson, ParisGoogle Scholar
  8. Eschmeyer WN, Fricke R (2009) Catalog of fishes, electronic version (updated 13 Mar 2009). http://research.calacademy.org/ichthyology/catalog/fishcatsearch.html, accessed 10 April 2009
  9. Hosoya K (2002) Leptobotia curta. In: Nakabo T (ed) Fishes of Japan with pictorial keys to the species, English edn. Tokai University Press, Tokyo, p 272Google Scholar
  10. Inoue JG, Miya M, Tsukamoto K, Nishida M (2000) Complete mitochondrial DNA sequence of the Japanese sardine, Sardinops melanostictus. Fish Sci 66:924–932CrossRefGoogle Scholar
  11. Jordan DS, Fowler HW (1903) A review of the Cobitidae, or loaches, of the rivers of Japan. Proc United States Natl Mus 26(1332):765–774Google Scholar
  12. Jordan DS, Tanaka S, Snyder JO (1913) A catalogue of the fishes of Japan. J Coll Sci Imper Univ Tokyo 33:1–497Google Scholar
  13. Kawanabe H, Mizuno N, Hosoya K (2001) Freshwater fishes of Japan, 3rd edn. Yama-Kei, TokyoGoogle Scholar
  14. Kottelat M (2004) Botia kubotai, a new species of loach (Teleostei: Cobitidae) from the Ataran River basin (Myanmar), with comments on botiine nomenclature and diagnoses of two new genera. Zootaxa 401:1–18Google Scholar
  15. Löytynoja A, Milinkovitch MC (2003) A hidden Markov model for progressive multiple alignment. Bioinformatics 19:1505–1513CrossRefPubMedGoogle Scholar
  16. McClelland J (1839) Indian Cyprinidae. Asiatic Res 19(Part 2):217–471, pls 37–61Google Scholar
  17. Miyadi D, Kawanabe H, Mizuno N (1976) Coloured illustration of the freshwater fishes of Japan. Hoiku-sha, TokyoGoogle Scholar
  18. Nakamura M, Motonobu T (1971) Life history of the cobitid fish Leptobotia curta (Temminck et Schlegel). Misc Rep Res Inst Nat Resour 75:8–15Google Scholar
  19. Nalbant TT (1963) A study of the genera of Botiinae and Cobitinae (Pisces, Ostariophysi, Cobitidae). Trav Mus Natl Hist Nat “Grigore Antipa” 4:343–379Google Scholar
  20. Nalbant TT (2002) Sixty million years of evolution. Part one. Family Botiidae (Pisces: Ostariophysi: Cobitoidea). Trav Mus Natl Hist Nat “Grigore Antipa” 44:309–344Google Scholar
  21. Nalbant TT (2004) Hymenphysa, Hymenophysa, Syncrossus, Chromobotia and other problems in the systematics of Botiidae. A reply to Maurice Kottelat. Trav Mus Natl Hist Nat Grigore Antipa 47:269–277Google Scholar
  22. Okada Y (1960) Studies on the freshwater fishes of Japan. II. Special part. J Fac Fish Pref Univ Mie 4:267–588Google Scholar
  23. Palumbi S, Martin A, Romano S, McMillian WO, Stice L, Grabowski G (1991) The simple fool’s guide to PCR. University of Hawaii, HonoluluGoogle Scholar
  24. Perdices A, Doadrio I (2001) The molecular systematics and biogeography of the European cobitids based on mitochondrial DNA sequences. Mol Phylogenet Evol 19:468–478CrossRefPubMedGoogle Scholar
  25. Perdices A, Doadrio I, Economidis PS, Bohlen J, Banarescu P (2003) Pleistocene effects on the European freshwater fish fauna: double origin of the cobitid genus Sabanejewia in the Danube basin (Osteichthyes: Cobitidae). Mol Phylogenet Evol 26:289–299CrossRefPubMedGoogle Scholar
  26. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitutions. Bioinformatics 14:817–818CrossRefPubMedGoogle Scholar
  27. Prager EM, Wilson AC (1988) Ancient origin of lactalbumin from lysozyme: analysis of DNA and amino acid sequences. J Mol Evol 27:326–335Google Scholar
  28. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574CrossRefPubMedGoogle Scholar
  29. Sawada Y (1982) Phylogeny and zoogeography of the superfamily Cobitoidea (Cyprinoidei, Cypriniformes). Mem Fac Fish Hokkaido Univ 28:65–223Google Scholar
  30. Shimodaira H (2002) An approximately unbiased test of phylogenetic tree selection. Syst Biol 51:492–508CrossRefPubMedGoogle Scholar
  31. Shimodaira H, Hasegawa M (2001) CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17:1246–1247CrossRefPubMedGoogle Scholar
  32. Šlechtová V, Bohlen J, Freyhof J, Ráb P (2006) Molecular phylogeny of the Southeast Asian freshwater fish family Botiidae (Teleostei: Cobitoidea) and the origin of polyploidy in their evolution. Mol Phylogenet Evol 39:529–541CrossRefPubMedGoogle Scholar
  33. Šlechtová V, Bohlen J, Tan HH (2007) Families of Cobitoidea (Teleostei; Cypriniformes) as revealed from nuclear genetic data and the position of the mysterious genera Barbucca, Psilorhynchus, Serpenticobitis and Vaillantella. Mol Phylogenet Evol 44:1358–1365CrossRefPubMedGoogle Scholar
  34. Swofford DL (2002) PAUP*. Phylogenetic analysis using parsimony (*and other methods), version 4b10a. Sinauer Associates, SunderlandGoogle Scholar
  35. Tang Q, Xiong B, Yang X, Liu H (2005) Phylogeny of the East Asian botiine loaches (Cypriniformes, Botiidae) inferred from mitochondrial cytochrome b gene sequences. Hydrobiologia 544:249–258CrossRefGoogle Scholar
  36. Tang Q, Liu H, Mayden R, Xiong B (2006) Comparison of evolutionary rates in the mitochondrial DNA cytochrome b gene and control region and their implications for phylogeny of the Cobitoidea (Teleostei: Cypriniformes). Mol Phylogenet Evol 39:347–357CrossRefPubMedGoogle Scholar
  37. Temminck CJ, Schlegel H (1846) Fauna Japonica, Poisson, part 10–14:173–269Google Scholar
  38. Tsubokawa K (1986) Systematics of the botoid fishes of China: an abridged translation of Chen (1980) and comments. Tansuigyo (Freshwater Fishes) (12):45–48Google Scholar
  39. Zhu S-Q (1995) Synopsis of freshwater fishes of China. Jiangsu Science and Technology Publishing House, NanjingGoogle Scholar

Copyright information

© The Ichthyological Society of Japan 2009

Authors and Affiliations

  • Katsutoshi Watanabe
    • 1
  • Tsukasa Abe
    • 2
  • Akihisa Iwata
    • 3
  1. 1.Division of Biological Science, Graduate School of ScienceKyoto UniversitySakyoJapan
  2. 2.Ushimado Marine Laboratory, Graduate School of Natural Science and TechnologyOkayama UniversityOkayamaJapan
  3. 3.Division of Southeast Asian Area Studies, Graduate School of Asian and African Area StudiesKyoto UniversitySakyoJapan

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