Marine Biotechnology

, Volume 7, Issue 4, pp 339–349 | Cite as

Complete Mitochondrial DNA Sequences of the Decapod Crustaceans Pseudocarcinus gigas (Menippidae) and Macrobrachium rosenbergii (Palaemonidae)

  • Adam D. Miller
  • Nicholas P. Murphy
  • Christopher P. Burridge
  • Christopher M. Austin
Article

Abstract

The complete mitochondrial DNA sequence was determined for the Australian giant crab Pseudocarcinns gigas (Crustacea: Decapoda: Menippidae) and the giant freshwater shrimp Macrobrachium rosenbergii (Crustacea: Decapoda: Palaemonidae). The Pse gigas and Mrosenbergii mitochondrial genomes are circular molecules, 15,515 and 15,772 bp in length, respectively, and have the same gene composition as found in other metazoans. The gene arrangement of M. rosenbergii corresponds with that of the presumed ancestral arthropod gene order, represented by Limulus polyphemus, except for the position of the tRNALeu(UUR) gene. The Pse. gigas gene arrangement corresponds exactly with that reported for another brachyuran, Portunus trituberculatus, and differs from the M. rosenbergii gene order by only the position of the tRNA His gene. Given the relative positions of intergenic nonoding nucleotides, the “duplication/random loss” model appears to be the most plausible mechanism for the translocation of this gene. These data represent the first caridean and only the second brachyuran complete mtDNA sequences, and a source of information that will facilitate surveys of intraspecific variation within these commercially important decapod species.

Keywords

Brachyura Caridea mitochondrial genome gene translocation duplication / random loss 

Notes

Acknowledgments

The authors thank Andrew Levings for providing Pse. gigas tissue samples and Arthur Mangos, from the Institute of Medical and Veterinary Sciences, for sequencing assistance. We also acknowledge Renfu Shao, Jeffrey Boore, and Jody Martin for their valuable comments on this research. Finally, we thank our colleagues from the Molecular Ecology and Biodiversity Laboratory, Deakin University Warrnambool, for their constant support and advice throughout this project. Adam Miller was supported by a Deakin University Postgraduate Scholarship, and funding for this research was provided by Deakin University’s Central Research Grant Scheme and the School of Ecology and Environment. We appreciate the helpful comments of two anonymous referees, which consequently improved our manuscript.

References

  1. Avise, J.C. 1994Molecular Markers, Natural History and EvolutionChapman and HallNew York, N.Y.Google Scholar
  2. Avise, J.C. 2000Phylogeography: The History and Formation of SpeciesHarvard University PressCambridge, Mass.Google Scholar
  3. Beard, C.B., Hamm, D.M., Collins, F.H. 1993The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organization, and comparisons with mitochondrial sequences of other insectsInsect Mol Biol2103124PubMedGoogle Scholar
  4. Boore, J.L. 1999Animal mitochondrial genomesNucleic Acids Res2717671780CrossRefPubMedGoogle Scholar
  5. Boore, J.L. 2000The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animalsSankoff, D.Nadeau, J.H. eds. Comparitive GenomicsKluwer Academic PublishersThe Netherlands133147Google Scholar
  6. Boore, J.L., Brown, W.M. 1994Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicataGenetics138423443PubMedGoogle Scholar
  7. Crandall, K.A., Lawler, S.H., Austin, C.M. 1995A preliminary examination of the molecular phylogenetic relationships of some crayfish genera from Australia (Decapoda:Parastacidae)Freshwater Crayfish101830Google Scholar
  8. Crease, T.J. 1999The complete sequence of the mitochondrial genome of Daphnia pulex (Cladocera: Crustacea)Gene2338999CrossRefPubMedGoogle Scholar
  9. Curole, J.P., Kocher, T.D. 1999Mitogenomics: digging deeper with complete mitochondrial genomesTrends Ecol Evol14394398CrossRefPubMedGoogle Scholar
  10. Bruyn, M., Wilson, J.A., Mather, P.B. 2004Huxley’s line demarcates extensive genetic divergence between eastern ana western forms of the giant freshwater prawn, Macrobrachium rosenbergiiMol Phylogenet Evol30251257CrossRefPubMedGoogle Scholar
  11. Delsuc, F., Phillips, M.J., Penny, D. 2003Comment on “hexapod origins: monophyletic or paraphyletic?”Science3011482dCrossRefGoogle Scholar
  12. Evans, J.D., Lopez, D.L. 2002Complete mitochondrial DNA sequence of the important honey bee pest, Varroa destructor (Acari : Varroidae)Exp Appl Acarol276978CrossRefPubMedGoogle Scholar
  13. Fearnley, I.M., Walker, J.E. 1986Two overlapping genes in bovine mitochondrial DNA encode membrane components of ATP synthaseEMBO J520032008PubMedGoogle Scholar
  14. Gilbert, D.G. SeqPup software, Indiana University, (1997)Google Scholar
  15. Hatzoglou, E., Rodakis, G.C., Lecanidou, R. 1995Complete sequence and gene organization of the mitochondrial genome of the land snail. Albinaria coeruleaGenetics14013531366PubMedGoogle Scholar
  16. Helfenbein, K.G., Brown, W.M., Boore, J.L. 2001The complete mitochondrial genome of the articulate brachiopod Terebratalia transversaMol Biol Evol1817341744PubMedGoogle Scholar
  17. Hickerson, M.J., Cunningham, C.W. 2000Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, Anomura)Mol Biol Evol17639644PubMedGoogle Scholar
  18. Hillis, D.M., Moritz, C., Mable, B.K. 1996Molecular Systematics2Sinauer AssociatesSunderland, MassGoogle Scholar
  19. Jacobs, H.T., Elliott, D.J., Veerabhadracharya, B.M., Farquharson, A. 1988Nucleotide sequence and gene organization of sea urchin mitochondrial DNAJ Mol Biol202185217CrossRefPubMedGoogle Scholar
  20. Lavrov, D.V., Boore, J.L., Brown, W.M. 2000The complete mitochondrial DNA sequence of the horseshoe crab Limulus polyphemusMol Biol Evol17813824PubMedGoogle Scholar
  21. Lavrov, D.V., Brown, W.M., Boore, J.L. 2004Phylogenetic position of the Pentastomida and (pan)crustacean relationshipsProc R Soc Lond B271537544CrossRefGoogle Scholar
  22. Levinson, G., Gutman, G.A. 1987Slipped-strand mispairing: a major mechanism for DNA sequence evolutionMol Biol Evol4203221PubMedGoogle Scholar
  23. Lowe, T.M., Eddy, S.R. 1997tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequenceNucleic Acids Res25955964CrossRefPubMedGoogle Scholar
  24. Macey, J.R., Larson, A., Ananjeva, N.B., Fang, Z., Papenfuss, T.J. 1997Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genomeMol Biol Evol1491104PubMedGoogle Scholar
  25. Macey, J.R., Schulte, J.A., Larson, A., Papenfuss, T.J. 1998Tandem duplication via light-strand synthesis may provide a precursor for mitochondrial genomic rearrangementMol Biol Evol157175PubMedGoogle Scholar
  26. Machida, R.J., Miya, M.U., Nishida, M., Nishida, S. 2002Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda)Mar Biotechnol4406417CrossRefPubMedGoogle Scholar
  27. Machida, R.J., Miya, M.U., Yamaguchi, M.M., Nishida, S. 2004Organization of the mitochondrial genome of Antarctic krill Euphausia superba (Crustacea: Malacostraca)Mar Biotechnol6238250CrossRefGoogle Scholar
  28. Martin, J.W., Davis, G.E. 2001An Updated Classification of the Recent CrustaceaNatural History Museum of Los Angeles CountyLos Angeles, CalifGoogle Scholar
  29. Miller, A.D., Nguyen, T.T.T., Burridge, CP., Austin, C.M. 2004Complete mitochondrial DNA sequence of the Australian freshwater crayfish, Cherax destructor (Crustacea: Decapoda; Parastacidae): a novel gene order revealedGene3316572CrossRefPubMedGoogle Scholar
  30. Moritz, C., Brown, W.M. 1987Tandem duplications in animal mitochondrial DNAs: variation in incidence and gene content among lizardsProc Natl Acad Sci U S A8471837187PubMedGoogle Scholar
  31. Murphy, N.P., Austin, C.M. 2002A preliminary study of the 16S rRNA sequence variation in Australian Macrobrachium shrimps (Palaemonidae: Decapoda) reveals inconsistencies in their current classificationInvert Syst16697701CrossRefGoogle Scholar
  32. Nardi, F., Spinsanti, G., Boore, J.L., Carapelli, A., Dallai, R., Frati, F. 2003Hexapod origins: monophyletic or paraphyleticScience29918871889CrossRefPubMedGoogle Scholar
  33. New, M. B., Valenti, W. C 2000Freshwater Prawn Culture Blackwell Science LtdLondon U.KGoogle Scholar
  34. Ogoh, K., Ohmiya, Y. 2004Complete mitochondrial DNA sequence of the sea-firefly, Vargula hilgendorfii (Crustacea, Ostracoda) with duplicate control regionsGene327131139CrossRefPubMedGoogle Scholar
  35. Ojala, D., Montoya, J., Attardi, G. 1981tRNA punctuation model of RNA processing hi human mitchondriaNature290470474CrossRefPubMedGoogle Scholar
  36. Palumbi, S.R., Benzie, J. 1991Large mitochondrial DNA differences between morphologically similar Penaeid shrimpMol Mar Biol Biotechnol12734PubMedGoogle Scholar
  37. Reyes, A., Gissi, C., Pesole, G., Saccone, C. 1998Asymmetrical directional mutation pressure in the mitochondrial genome of mammalsMol Biol Evol18957966Google Scholar
  38. Shao, R., Barker, S.C. 2003The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genesMol Biol Evol20362370CrossRefPubMedGoogle Scholar
  39. Tamura, K., Aotsuka, T. 1988Rapid isolation method of animal mitochondrial DNA by the alkaline lysis procedureBiochem Genet26815819CrossRefPubMedGoogle Scholar
  40. Umetsu, K., Iwabuchi, N., Yuasa, I., Saitou, N., Clark, P.P., Boxshall, G., Osawa, M., Igarashi, K. 2002Complete mitochondrial DNA sequence of a tadpole shrimp (Triops cancriformis) and analysis of museum samplesElectrophoresis2340804084CrossRefPubMedGoogle Scholar
  41. Valverde, J.R., Batuecas, B., Moratilla, C., Marco, R., Garesse, R. 1994The complete mitochondrial DNA sequence of the crustacean Artemia franciscanaJ Mol Evol39400408CrossRefPubMedGoogle Scholar
  42. Wilson, K., Cahill, V., Bailment, E., Benzie, J. 2000The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: Are malacostracan crustaceans more closely related to insects than to branchiopods?Mol Biol Evol17863874PubMedGoogle Scholar
  43. Wolstenhome, D.R. 1992Animal mitochondrial DNA: structure and evolutionInt Rev Cyt141173216PubMedGoogle Scholar
  44. Yamauchi, M.M., Miya, M., Nishida, M. 2002Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda)Gene2958996CrossRefPubMedGoogle Scholar
  45. Yamauchi, M.M., Miya, M.U., Nishida, M. 2003Complete mitochondrial DNA sequence of the swimming crab, Portunus trituberculatus (Crustacea: Decapoda: Brachyura)Gene311129135CrossRefPubMedGoogle Scholar

Copyright information

© Springer Science+Business Media, Inc. 2005

Authors and Affiliations

  • Adam D. Miller
    • 1
  • Nicholas P. Murphy
    • 2
  • Christopher P. Burridge
    • 1
  • Christopher M. Austin
    • 1
  1. 1.School of Ecology and EnvironmentDeakin UniversityWarrnamboolAustralia
  2. 2.Centre for Evolutionary Biology and Biodiversity, Department of Environmental BiologyAdelaide UniversityAdelaideAustralia

Personalised recommendations