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Marine Biotechnology

, Volume 6, Issue 1, pp 26–36 | Cite as

AFLP-Based Genetic Linkage Maps of the Pacific Oyster Crassostrea gigas Thunberg

  • Li Li
  • Ximing Guo
Article

Abstract

Amplified fragment length polymorphisms (AFLPs) were used for genome mapping in the Pacific oyster Crassostrea gigas Thunberg. Seventeen selected primer combinations produced 1106 peaks, of which 384 (34.7%) were polymorphic in a backcross family. Among the polymorphic markers, 349 were segregating through either the female or the male parent. Chi-square analysis indicated that 255 (73.1%) of the markers segregated in a Mendelian ratio, and 94 (26.9%) showed significant (P < 0.05) segregation distortion. Separate genetic linkage maps were constructed for the female and male parents. The female framework map consisted of 119 markers in 11 linkage groups, spanning 1030.7 cM, with an average interval of 9.5 cM per marker. The male map contained 96 markers in 10 linkage groups, covering 758.4 cM, with 8.8 cM per marker. The estimated genome length of the Pacific oyster was 1258 cM for the female and 933 cM for the male, and the observed coverage was 82.0% for the female map and 81.3% for the male map. Most distorted markers were deficient for homozygotes and closely linked to each other on the genetic map, suggesting the presence of major recessive deleterious genes in the Pacific oyster.

Keywords

linkage mapping genetic map AFLP genome oyster Crassostrea gigas 

Notes

Acknowledgements

We thank Mr. Gregory DeBrosse for care of experimental animals and Dr. Ziniu Yu for technical assistance with AFLP analysis. This work is conducted at Rutgers University and partly supported by grants from the New Jersey Commission on Science and Technology (00-2042-007-20) and Sea Grant (OD-9915 and ODRP-29). Li Li is a visiting student from IOCAS and partly supported by China’s Natural Science Foundation (Grant 39825121). This is publication IMCS-2003-27 and NJSG-03-39.

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Copyright information

© Springer-Verlag 2003

Authors and Affiliations

  1. 1.Haskin Shellfish Research LaboratoryInstitute of Coastal and Marine Sciences, Rutgers University, 6959 Miller Avenue, Port Norris, NJ 08349USA
  2. 2.Experimental Marine Biology LaboratoryInstitute of Oceanology, Chinese Academy of Science, 7 Nanhai Road, Qingdao, Shandong 266071P.R.C.
  3. 3.The Graduate School of Chinese Academy of Sciences, Beijing 100039P.R.C.

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