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Molecules and Cells

, Volume 30, Issue 6, pp 507–512 | Cite as

DNA barcode-based molecular identification system for fish species

  • Sungmin Kim
  • Hae-Seok Eo
  • Hyeyoung Koo
  • Jun-Kil Choi
  • Won Kim
Article

Abstract

In this study, we applied DNA barcoding to identify species using short DNA sequence analysis. We examined the utility of DNA barcoding by identifying 53 Korean freshwater fish species, 233 other freshwater fish species, and 1339 saltwater fish species. We successfully developed a web-based molecular identification system for fish (MISF) using a profile hidden Markov model. MISF facilitates efficient and reliable species identification, overcoming the limitations of conventional taxonomic approaches. MISF is freely accessible at http://bioinfosys.snu.ac.kr:8080/MISF/misf.jsp.

Keywords

DNA barcoding fish hidden Markov model molecular identification system for fish (MISF) 

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Copyright information

© The Korean Society for Molecular and Cellular Biology and Springer Netherlands 2010

Authors and Affiliations

  • Sungmin Kim
    • 1
  • Hae-Seok Eo
    • 2
  • Hyeyoung Koo
    • 3
  • Jun-Kil Choi
    • 3
  • Won Kim
    • 1
    • 4
  1. 1.Interdisciplinary Program in BioinformaticsSeoul National UniversitySeoulKorea
  2. 2.Information & Technology LaboratoryLG Electronics Inc.SeoulKorea
  3. 3.Department of Biological ScienceSangji UniversityWonjuKorea
  4. 4.School of Biological SciencesSeoul National UniversitySeoulKorea

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