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UV–vis absorption spectrum of a novel Ru(II) complex intercalated in DNA: [Ru(2,2′-bipy)(dppz)(2,2′-ArPy)]+

  • Agisilaos Chantzis
  • Thibaut Very
  • Stéphane Despax
  • Jean-Thomas Issenhuth
  • Alex Boeglin
  • Pascal Hébraud
  • Michel Pfeffer
  • Antonio Monari
  • Xavier Assfeld
Original Paper
Part of the following topical collections:
  1. Topical Collection on the occasion of Prof. Tim Clark’s 65th birthday

Abstract

The synthesis of a new Ru(II) complex is reported. Its absorption spectrum when interacting with DNA in water was calculated at the hybrid quantum mechanics molecular mechanics level of theory and compared with experimental data. The vertical transitions were computed using time-dependent density functional theory in the linear response approximation. The complex and its environment were treated at the quantum mechanical and molecular mechanical levels, respectively. The effects of the environment were investigated in detail and conveniently classified into electrostatic and polarization effects. The latter were modeled using the computationally inexpensive “electronic response of the surroundings” method. It was found that the main features of the experimental spectrum are nicely reproduced by the theoretical calculations. Moreover, analysis of the most intense transitions utilizing the natural transition orbital formalism revealed important insights into their nature and their potential role in the irreversible oxidation of DNA, a phenomenon that could be relevant in the field of cancer therapy.

Figure

The Ru(II) complex intercalated into the DNA helix.

Keywords

Electronic spectra TDDFT QM/MM Environmental effects Ru(II) complexes DNA 

Notes

Acknowledgments

XA expresses all of his gratitude to Professor Tim Clark, for his long-lasting support and for his tremendous contribution to the deciphering of noncovalent interactions. Support from Université de Lorraine is gratefully acknowledged. AM thanks CNRS for their funding of the “Chaire d’excellence.” Financial funding from the ANR through the ANR-09-BLAN-0191-01 “PhotoBioMet” project is also acknowledged.

Supplementary material

894_2014_2082_MOESM1_ESM.docx (84 kb)
ESM 1 (DOCX 83 kb)

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Copyright information

© Springer-Verlag Berlin Heidelberg 2014

Authors and Affiliations

  • Agisilaos Chantzis
    • 1
    • 2
  • Thibaut Very
    • 1
    • 2
  • Stéphane Despax
    • 3
  • Jean-Thomas Issenhuth
    • 4
  • Alex Boeglin
    • 3
  • Pascal Hébraud
    • 3
  • Michel Pfeffer
    • 4
  • Antonio Monari
    • 1
    • 2
  • Xavier Assfeld
    • 1
    • 2
  1. 1.Université de Lorraine Nancy, Théorie, Modélisation, Simulation, SRSMC UMR 7565Vandoeuvre-lès-NancyFrance
  2. 2.CNRS, Théorie, Modélisation, Simulation, SRSMC UMR 7565Vandoeuvre-lès-NancyFrance
  3. 3.IPCMS CNRS UMR 7504StrasbourgFrance
  4. 4.Institut de ChimieUMR 7177, CNRS/Université de Strasbourg, Laboratoire de Synthèses Métallo-InduitesStrasbourgFrance

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