Density functional calculation of pKa values and redox potentials in the bovine Rieske iron-sulfur protein

  • Matthias G. Ullmann
  • Louis Noodleman
  • David A. Case
Original Article

DOI: 10.1007/s00775-002-0342-6

Cite this article as:
Ullmann, M.G., Noodleman, L. & Case, D.A. J Biol Inorg Chem (2002) 7: 632. doi:10.1007/s00775-002-0342-6

Abstract.

The redox potential of the Rieske iron-sulfur protein depends on pH. It has been proposed that the histidines coordinating one of the irons are responsible for this pH dependence, but an experimental proof for this proposal is still lacking. In this work, we present a density functional/continuum electrostatics calculation of the pKa values of the histidines in the Rieske iron-sulfur center. The calculated apparent pKa values are 6.9 and 8.8 in the oxidized state, which are in good agreement with the corresponding experimental values of 7.5 and 9.2 and the measured pH dependence of the redox potential. Neither of these two pKa values can, however, be assigned to only one of the histidines. We find that both histidines titrate over a wide pH range in the oxidized state. Reduction of the iron-sulfur center shifts the pKa values to 11.3 and 12.8, thus above 10.0 as found experimentally. The results provide a complete picture of the coupling of proton and electron binding, showing strongly cooperative binding of protons at electrode potentials near the redox midpoint potential of the cluster. The potential biological function of the low pKa value of the histidines and the shift upon reduction are briefly discussed. Electronic supplementary material to this paper (comprising tables with the partial charges of the Rieske iron-sulfur cluster, optimized geometries of the 12 different states, and pK1/2 values for the non-coordinating residues of the Rieske protein in the oxidized and reduced state) can be obtained by using the Springer Link server located at http://dx.doi.org/10.1007/s00775-002-0342-6.

Density functional calculation Rieske protein Iron-sulfur protein pKa values Redox potentials 

Copyright information

© SBIC 2002

Authors and Affiliations

  • Matthias G. Ullmann
    • 1
  • Louis Noodleman
    • 1
  • David A. Case
    • 1
  1. 1.Department of Molecular Biology, The Scripps Research Institute, 10550 N. Torrey Pines Road, TPC-15, La Jolla, CA 92037, USAUSA
  2. 2.Present address: IWR – Biocomputing, Universität Heidelberg, Im Neuenheimer Feld 368, 69120 Heidelberg, GermanyGermany

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