Advertisement

Archives of Virology

, Volume 162, Issue 10, pp 3221–3224 | Cite as

Full genome sequence of jujube mosaic-associated virus, a new member of the family Caulimoviridae

  • Kaitong Du
  • Sijia Liu
  • Zhaorong Chen
  • Zaifeng Fan
  • He Wang
  • Guozhong TianEmail author
  • Tao ZhouEmail author
Annotated Sequence Record

Abstract

We report a new circular DNA virus identified from a Chinese jujube tree showing mosaic-like symptoms. The genome of this virus is 7194 bp in length and contains five putative open reading frames (ORFs), all on the plus-strand of the genome. The genomic organization, primer binding sites and the sizes of the ORFs were similar to those reported for other badnaviruses (family Caulimoviridae), except for ORF3, which was split into ORF3a and ORF3b with a 70-nt intergenic region. Furthermore, this new virus shares low nucleotide sequence identity (<50%) with other members of the family Caulimoviridae. Consequently, we propose this virus as a new member of the family Caulimoviridae and refer to it as jujube mosaic-associated virus (JuMaV).

Notes

Acknowledgements

This research was supported by the National High Technology Research and Development Program of P. R. China (2012AA101501) and a grant from the Ministry of Education of China (the 111 Project B13006).

Supplementary material

705_2017_3438_MOESM1_ESM.doc (43 kb)
Supplementary material 1 (DOC 43 kb)

References

  1. 1.
    Borah BK, Sharma S, Kant R, Anthony-Johnson AM, Saigopal DVR, Dasgupta I (2013) Bacilliform DNA-containing plant viruses in the tropics: commonalities within a genetically diverse group. Mol Plant Pathol 14:759–771CrossRefPubMedGoogle Scholar
  2. 2.
    Harper G, Hull R (1998) Cloning and sequence analysis of banana streak virus DNA. Virus Genes 17:271–278CrossRefPubMedGoogle Scholar
  3. 3.
    King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (2012) Virus taxonomy: Ninth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, LondonGoogle Scholar
  4. 4.
    Rothnie HM, Chapdelaine Y, Hohn T (1994) Pararetroviruses and retroviruses: a comparative review of viral structure and gene expression strategies. Adv Virus Res 44:1–67CrossRefPubMedGoogle Scholar
  5. 5.
    Vo JN, Campbell PR, Mahfuz NN, Ramli R, Pagendam D, Barnard R, Geering ADW (2016) Characterization of the banana streak virus capsid protein and mapping of the immunodominant continuous B-cell epitopes to the surface-exposed N terminus. J Gen Virol 97:3446–3457CrossRefPubMedGoogle Scholar
  6. 6.
    Bhat AI, Hohn T, Selvarajan R (2016) Badnaviruses: the current global scenario. Viruses 177:1–29Google Scholar
  7. 7.
    Hohn T, Fütterer J (1997) The proteins and functions of plant pararetroviruses: knowns and unknowns. Plant Sci 16:133–161CrossRefGoogle Scholar
  8. 8.
    Hagen LS, Jacquemond M, Lepingle A, Lot H, Tepfer M (1993) Nucleotide sequence and genomic organization of Cacao swollen shoot virus. Virology 196:619–628CrossRefPubMedGoogle Scholar
  9. 9.
    Lee YJ, Kwak HR, Lee YK, Kim MK, Choi HS, Seo JK (2015) Complete genome sequence of yacon necrotic mottle virus, a novel putative member of the genus Badnavirus. Arch Virol 1160:1139–1142CrossRefGoogle Scholar
  10. 10.
    Liu MJ (2008) China jujube development report, 1949–2007. China Forestry Publishing House, BeijingGoogle Scholar
  11. 11.
    Liu MJ, Liu P, Liu GN (2013) Advances of research on germplasm resources of Chinese jujube. Acta Hortic 993:15–20CrossRefGoogle Scholar
  12. 12.
    Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321–4326CrossRefPubMedPubMedCentralGoogle Scholar
  13. 13.
    Su L, Gao S, Huang Y, Ji C, Wang D, Ma Y, Fang R, Chen X (2007) Complete genomic sequence of Dracaena mottle virus, a distinct badnavirus. Virus Genes 35:423–430CrossRefPubMedGoogle Scholar
  14. 14.
    Yang IC, Hafner GJ, Revil PA, Dale JL, Harding RM (2003) Sequence diversity of South Pacific isolates of Taro bacilliform virus and the development of a PCR-based diagnostic test. Arch Virol 148:1957–1968CrossRefPubMedGoogle Scholar
  15. 15.
    Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–2948CrossRefPubMedGoogle Scholar
  16. 16.
    Mollov D, Lockhart B, Zlesak DC, Olszewski N (2013) Complete nucleotide sequence of rose yellow vein virus, a member of the family Caulimoviridae having a novel genome organization. Arch Virol 158:877–880CrossRefPubMedGoogle Scholar
  17. 17.
    Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739CrossRefPubMedPubMedCentralGoogle Scholar

Copyright information

© Springer-Verlag GmbH Austria 2017

Authors and Affiliations

  1. 1.State Key Laboratory of Agrobiotechnology and Department of Plant PathologyChina Agricultural UniversityBeijingChina
  2. 2.College of Horticulture and LandscapeTianjin Agricultural UniversityTianjinChina
  3. 3.Beijing Forest Protection StationBeijingChina
  4. 4.Key Laboratory of Forest Protection of State Forestry Administration, Research Institute of Forest Ecology, Environment and ProtectionChinese Academy of ForestryBeijingChina

Personalised recommendations