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Archives of Virology

, Volume 155, Issue 11, pp 1897–1899 | Cite as

The complete sequence of a UK strain of black raspberry necrosis virus

  • W. J. McGavin
  • L. S. McMenemy
  • S. A. MacFarlane
Annotated Sequence Record

Abstract

The complete nucleotide sequence of a UK strain of the sadwavirus Black raspberry necrosis virus (BRNV) was obtained by amplification and sequencing of virus RNA from infected plants grown in a raspberry plantation in Aylth, Scotland. The RNA1 was 7,572 nucleotides (nt) in size and RNA2 was 6,350 nt in size, each excluding the 3′ poly-A tail. The RNA1- and RNA2-encoded polyproteins are predicted to be processed into (RNA1) a protease cofactor, an RNA helicase, the VpG, a 3C-like protease, an RNA-dependent RNA polymerase and an AlkB protein, and (RNA2) a movement protein and two capsid proteins.

Keywords

North American Black Raspberry Significant Sequence Diversity Raspberry Plant American Virus 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

Notes

Acknowledgments

This work was funded by the Scottish Government Rural and Environment Research and Analysis Directorate (RERAD). LMS was supported by a PhD scholarship jointly funded by SCRI and Sussex University.

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Copyright information

© Springer-Verlag 2010

Authors and Affiliations

  • W. J. McGavin
    • 1
  • L. S. McMenemy
    • 1
  • S. A. MacFarlane
    • 1
  1. 1.Plant Pathology ProgrammeSCRI, InvergowrieDundeeUK

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