Archives of Virology

, Volume 154, Issue 7, pp 1189–1193 | Cite as

Suggestions for a nomenclature of endogenous pararetroviral sequences in plants

Virology Division News



The authors thank M.A. Grandbastien for valuable comments on the manuscript and R. Hull for helpful advice in defining a threshold level for sequence comparisons.


  1. 1.
    Temin HM (1985) Reverse transcription in the eukaryotic genome: retroviruses, pararetroviruses, retrotransposons and retrotranscripts. Mol Biol Evol 2:455–468PubMedGoogle Scholar
  2. 2.
    Staginnus C, Richert-Pöggeler KR (2006) Endogenous pararetroviruses: two-faced travelers in the plant genome. Trends Plant Sci 11(10):485–491PubMedCrossRefGoogle Scholar
  3. 3.
    Gayral P et al (2008) A single banana streak virus integration event in the banana genome as the origin of infectious endogenous pararetrovirus. J Virol 82:6697–6710PubMedCrossRefGoogle Scholar
  4. 4.
    Pahalawatta V et al (2008) A new and distinct species in the genus Caulimovirus exists as an endogenous plant pararetroviral sequence in its host, Dahlia variabilis. Virology 376:253–257. doi: 10.1016/j.virol.2008.03.003
  5. 5.
    Hohn T et al (2008) Evolution of integrated plant viruses. In: Roossinck MJ (ed) Plant virus evolution. Springer, Berlin, pp 53–81. doi: 10.1007/978-3-540-75763-4 CrossRefGoogle Scholar
  6. 6.
    Harper G et al (2005) The diversity of banana streak virus isolates in Uganda. Arch Virol 150:2407–2420PubMedCrossRefGoogle Scholar
  7. 7.
    Geering ADW et al (2005) Banana contains a diverse array of endogenous badnaviruses. J Gen Virol 86:511–520PubMedCrossRefGoogle Scholar
  8. 8.
    Kunii M et al (2004) Reconstruction of putative DNA virus from endogenous rice tungro bacilliform virus-like sequences in the rice genome: implications for integration and evolution. BMC Genomics 5:80 doi: 10.1186/1471-2164-5-80 (
  9. 9.
    Richert-Pöggeler KR et al (2003) Induction of infectious Petunia vein clearing (pararetro) virus from endogenous provirus in petunia. EMBO J 22:4836–4845PubMedCrossRefGoogle Scholar
  10. 10.
    Hansen CN et al (2005) Characterization of pararetrovirus-like sequences in the genome of potato (Solanum tuberosum). Cytogenet Genome Res 110:559–565PubMedCrossRefGoogle Scholar
  11. 11.
    Staginnus C et al (2007) Endogenous pararetroviral sequences in tomato (Solanum lycopersicum) and related species. BMC Plant Biol 7:24. doi: 10.1186/1471-2229-7-24 PubMedCrossRefGoogle Scholar
  12. 12.
    Wicker T et al (2007) A unified classification system for eukaryotic transposable elements. Nat Rev Genet 8:973–982. doi: 10.1038/nrg2165 PubMedCrossRefGoogle Scholar
  13. 13.
    Fauquet C et al (2005) Virus taxonomy: classification and nomenclature of viruses: eighth report of the International Committee on the Taxonomy of Viruses. Elsevier/Academic Press, San DiegoGoogle Scholar
  14. 14.
    Gregor W et al (2004) A distinct endogenous pararetrovirus family in Nicotiana tomentosiformis, a diploid progenitor of polyploid tobacco. Plant Physiol 134:1191–1199PubMedCrossRefGoogle Scholar
  15. 15.
    Mette MF et al (2002) Endogenous viral sequences and their potential contribution to heritable virus resistance in plants. EMBO J 21:461–469PubMedCrossRefGoogle Scholar
  16. 16.
    Geering ADW et al (2001) Analysis of the distribution and structure of integrated banana streak virus DNA in a range of Musa cultivars. Mol Plant Pathol 2:207–213CrossRefGoogle Scholar
  17. 17.
    Geering ADW et al (2005) Characterisation of banana streak Mysore virus and evidence that its DNA is integrated in the B genome of cultivated Musa. Arch Virol 150:787–796PubMedCrossRefGoogle Scholar
  18. 18.
    Harper G et al (1999) Detection of episomal banana streak badnavirus by IC-PCR. J Virol Methods 79:1–8PubMedCrossRefGoogle Scholar
  19. 19.
    Ndowora T et al (1999) Evidence that badnavirus infection in Musa can originate from integrated pararetroviral sequences. Virology 255:214–220PubMedCrossRefGoogle Scholar
  20. 20.
    Harper G et al (2002) Viral sequences integrated into plant genomes. Annu Rev Phytopathol 40:119–136PubMedCrossRefGoogle Scholar
  21. 21.
    Lockhart BE et al (2000) Characterization and genomic analysis of tobacco vein clearing virus, a plant pararetrovirus that is transmitted vertically and related to sequences integrated in the host genome. J Gen Virol 81:1579–1585PubMedGoogle Scholar
  22. 22.
    Jakowitsch J et al (1999) Integrated pararetroviral sequences define a unique class of dispersed repetitive DNA in plants. Proc Natl Acad Sci USA 96:13241–13264PubMedCrossRefGoogle Scholar
  23. 23.
    Matzke M et al (2004) Endogenous pararetroviruses of allotetraploid Nicotiana tabacum and its diploid progenitors. N. sylvestris and N. tomentosiformis. Biol J Linn Soc 82:627–638CrossRefGoogle Scholar

Copyright information

© Springer-Verlag 2009

Authors and Affiliations

  1. 1.Plant Molecular BiologyBiocentre, University of Frankfurt am MainFrankfurt am MainGermany
  2. 2.Julius Kühn-Institut (JKI), Federal Research Centre for Cultivated PlantsInstitute for Epidemiology and Pathogen DiagnosticsBraunschweigGermany
  3. 3.CIRADUMR BGPI-TA A54/KMontpellier Cedex 5France
  4. 4.Department of Plant PathologyUniversity of MinnesotaSt. PaulUSA
  5. 5.Botanical InstituteUniversity of BaselBaselSwitzerland

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