Spatio-temporal prediction of daily temperatures using time-series of MODIS LST images
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- Hengl, T., Heuvelink, G.B.M., Perčec Tadić, M. et al. Theor Appl Climatol (2012) 107: 265. doi:10.1007/s00704-011-0464-2
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A computational framework to generate daily temperature maps using time-series of publicly available MODIS MOD11A2 product Land Surface Temperature (LST) images (1 km resolution; 8-day composites) is illustrated using temperature measurements from the national network of meteorological stations (159) in Croatia. The input data set contains 57,282 ground measurements of daily temperature for the year 2008. Temperature was modeled as a function of latitude, longitude, distance from the sea, elevation, time, insolation, and the MODIS LST images. The original rasters were first converted to principal components to reduce noise and filter missing pixels in the LST images. The residual were next analyzed for spatio-temporal auto-correlation; sum-metric separable variograms were fitted to account for zonal and geometric space-time anisotropy. The final predictions were generated for time-slices of a 3D space-time cube, constructed in the R environment for statistical computing. The results show that the space-time regression model can explain a significant part of the variation in station-data (84%). MODIS LST 8-day (cloud-free) images are unbiased estimator of the daily temperature, but with relatively low precision (±4.1°C); however their added value is that they systematically improve detection of local changes in land surface temperature due to local meteorological conditions and/or active heat sources (urban areas, land cover classes). The results of 10–fold cross-validation show that use of spatio-temporal regression-kriging and incorporation of time-series of remote sensing images leads to significantly more accurate maps of temperature than if plain spatial techniques were used. The average (global) accuracy of mapping temperature was ±2.4°C. The regression-kriging explained 91% of variability in daily temperatures, compared to 44% for ordinary kriging. Further software advancement—interactive space-time variogram exploration and automated retrieval, resampling and filtering of MODIS images—are anticipated.
KeywordsLand surface temperature Regression-kriging Space-time variogram MODIS Noise filtering Principal component analysis
A recurring problem within climatology and meteorology is the optimization of interpolation techniques to generate maps of meteorological and climatic parameters using point measurements from climatic stations. A variety of interpolation techniques, ranging from splines, regression and kriging to neural networks and machine learning techniques have been suggested and evaluated (Antonić et al. 2001; Jarvis and Stuart 2001; Boer et al. 2001; Hartkamp et al. 1999). Most of these techniques perform better if auxiliary gridded maps, i.e. information on topography (Digital Elevation Model), exposition, distance from the coast-line and similar, are used for interpolation. Jeffrey et al. (2001), for example, produced an archive of climatic variables for Australia using thin plate splines and elevation as auxiliary predictor. Hijmans et al. (2005) use latitude, longitude, and elevation as auxiliary variables to produce global maps of a variety of climatic variables by thin plate smoothing splines: monthly total precipitation, monthly mean, minimum and maximum temperature, and 19 derived bioclimatic variables. Extending this idea, the PRISM group of the Oregon State University used weighted regression with an extended list of predictors—elevation, coastal proximity, vertical layer, topographic facet, effective terrain weights etc.—to produce (retrospective) daily precipitation and temperature data sets for the conterminous USA (Daly et al. 2008).
Although techniques such as smoothing splines have been well accepted by the climatic modeling community, they may be criticized by geostatisticians for allowing users to set the model parameters subjectively. Also, the quantification of interpolation error is less sophisticated than with geostatistical interpolation techniques (Boer et al. 2001). On the other hand, splines are more efficient in dealing with noisy (weather station) data as they do not need to go through the measured values. Unlike the kriging methods that often ignore measurement error and force predictions to go through actual measured values.
In recent years, there has been a shift in the discipline to improve two important aspects of climatic mapping: (1) statistical robustness—by using uni- or multivariate (dynamic) spatio-temporal prediction models; (2) temporal coverage—by extending the list of auxiliary variables to time series of remote-sensing based meteorological images. A geostatistical interpolation technique known as “Kriging with External Drift” (KED), “Universal kriging” (UK) and “regression-kriging” (RK) is now largely recognized as a flexible and well-performing technique for unbiased estimation of spatially continuous features (fields), and is also increasingly used for interpolation of meteorological and climatic variables (Hudson and Wackernagel 1994; Pebesma 2006; Hengl 2009).
Geostatistical methods used in meteorology are now also increasingly 3-D (2-D plus time) and 4-D (3-D plus time). Gelfand et al. (2005) proposed a Bayesian inference framework for predicting temperature and extended it to multivariate dynamic spatial models. Schuurmans et al. (2007) further propose an automated framework for prediction of rainfall fields using spatio-temporal data and KED. Carrera-Hernández and Gaskin (2007) compare KED and KED in a local window for spatio-temporal interpolation of temperatures and rainfall over the Basin of Mexico. Kebaili Bargaoui and Chebbi (2009) show that 3-D kriging leads to significantly lower prediction errors than classical 2-D kriging. Inclusion of temporal auto-correlation has in general shown to increase information content in the generated maps (Spadavecchia and Williams 2009). The remaining issue is how to combine time series of meteorological images with ground observations.
In this article we present a procedure to interpolate daily mean temperature over a whole year period by using time series of auxiliary predictors. We first build a spatio-temporal regression model using the complete point data and covariate data, then estimate the deterministic part of variation, analyze residuals for spatial and temporal auto-correlation, and finally generate gridded maps by spatio-temporal regression-kriging. Our objective is to promote space-time prediction techniques for operational mapping versus purely spatial methods, and motivate meteorological agencies to utilize publicly available time series of remote sensing products (MODIS) for production of meteorological and climatic maps.
2 Theoretical concepts
A physical-deterministic model would in theory do the best job in explaining the spatio-temporal patterns of temperature, but this is in practice far from trivial, for several reasons. Number one, there are many parameters that need to be included in the model. This is not a big problem for factors such as the incoming solar radiation, which can be globally derived as a function of latitude, longitude, elevation, exposition and day of the year, and coastal effects which can be modeled by using the distance from the sea and exposition of terrain. Both models are inexpensive considering that the geomorphology of the Earth is well sampled through e.g. the SRTM mission. On the other hand, factors such as wind, temperature inversions and local radiation are more difficult to represent because their temporal variability is high. It would become even more expensive to collect field data on wind intensity and direction and cloud status, than to measure air temperature over a dense network. Number two, the model in Eq. 1 is fairly complex and model inputs, initial and boundary conditions, are poorly known, so that deterministic modeling becomes close to impossible (at least at the current level of technology).
Historically, temperature, precipitation and other crucial meteorological variables have been observed locally at meteorological stations, and subsequently interpolated over large areas to produce complete maps. Modern meteorology is enriched with remote sensing imagery. A range of meteorological images at different wavelengths (visible, infrared, thermal and microwaves), in passive and active modes (microwave radiometers and precipitation radar), and from low and geostationary orbits are now available to the meteorological monitoring community and are increasingly used to produce direct (and global) estimates of meteorological variables (Baum and Platnick 2006; Prigent 2010). One popular source of remote-sensing based estimates of Land Surface Temperature are the Moderate Resolution Imaging Spectroradiometer (MODIS) Land Surface Temperature (LST) images, derived from the MODIS thermal bands. According to Wan et al. (2004), the accuracy of MODIS LST images is cca ±1°K, which is more than satisfactory considering that MODIS products are available on near-to-daily basis and distributed freely via the Level 1 and Atmosphere Archive and Distribution System (LAADS FTP).
If we ignore the causality problem in the time domain, we are still left with a problem of representing the space-time autocorrelation accurately because space and time have different variability patterns. In practice, when dealing with real-world data, space-time variograms are fitted by introducing simplifying statistical assumptions. Basically, two main groups of approaches exist: (a) separable (purely spatial and purely temporal models) and (b) non-separable (space-time) approach (Ma 2005; Huang et al. 2007).
3 Methods and materials
3.1 Study area
We use the meteorological data from the Croatian National Meteorological Service to demonstrate the method and assess the accuracy of predictions. Croatia is a relatively small country but it comprises several different climatic regions, which is a result of its specific position near the Adriatic Sea and its fairly diverse topography, ranging from plains in the East, through a hilly central part to the mountains in the West separating the continental from the maritime part of the country. Weather systems originating or crossing over Croatian territory are strongly influenced by this topography, thus the influence that these have on weather and climate is highly dependent on the region (Hiebl et al. 2009; Perčec Tadić 2010). This diversity of climate and terrain at relatively short distances makes this region of special interest for testing more complex climatic models (Antonić et al. 2001).
Some previous results of climatic modeling for a wider (Alpe-Adria) region can be followed in the work of Hiebl et al. (2009). 1 km resolution grids of main climatic parameters for the wider region can also be obtained from the web site of the Central Institute for Meteorology and Geodynamics in Vienna.
3.2 Ground data
The spatial distribution of stations in Croatia is not ideal for mapping purposes (Fig. 2). There is a certain under-sampling at higher elevations and in areas with lower population density. For practical reasons, areas of higher population density have been given a priority (Perčec Tadić 2010).
3.3 Auxiliary gridded predictors
We used five topographic predictors (see also Hiebl et al. 2009) and a time series of MODIS images to aid the interpolation of daily temperature. The static predictors are latitude (LAT), longitude (LON), SRTM Digital Elevation Model (DEM), topographically weighted distance from the coast line (DSEA), and topographic wetness index (TWI), which is also often used to describe cold air accumulation potential. Dynamic predictors are DEM-derived total insolation (INSOL) and MODIS LST images.
The SAGA GIS TWI was first computed using a 100 m SRTM DEM (Conrad 2007), then aggregated to 1 km resolution (Fig. 2). Total incoming solar radiation i.e. insolation (expressed in Joules per grid cell) was derived for each day using the SAGA GIS lightning module. This follows the algorithm developed by Böhner & Trachinow and described in detail in Böhner and Antonić (2008). Inputs to the derivation of total (sum of direct and diffuse) insolation is a DEM, latitude and longitude grids of the study area, the solar constant, and day of year.
To prevent the generation of incomplete maps, we filtered the missing pixels in the MODIS LST images first by taking the average of values between two neighboring dates. The remaining empty pixels are filtered using the close gap function in SAGA GIS available via the module grid_tools. This function iteratively filters all missing pixels from its neighbors by using a spline interpolation (Conrad 2007).
3.4 Data processing steps
For analysis of data and spatio-temporal prediction we use the R environment for statistical computing in combination with GIS packages SAGA GIS and GDAL utilities (Bivand et al. 2008; Hengl 2009). First, we import the point data and time series of images to R using the GDAL translation library, next overlay and reorganize the data into a space-time matrix where each grid node is represented as a 3D point with x, y, t coordinates (as illustrated in Fig. 1).
For spatio-temporal prediction we used the spatio-temporal regression-kriging framework as implemented in the gstat package via 3D kriging (Pebesma et al. 2007; Heuvelink and Griffith 2010), i.e. the time dimension is simply modeled as a third dimension (Huerta et al. 2004; Jost et al. 2005). The regression and residual kriging parts are dealt with separately: we first produced predictions for the regression part of Eq. 9 on a fine grid, next extract residuals for all observations and fit a global sum-metric variogram model. The residuals were then interpolated to the same grid and added to the predicted trend.
The sum-metric covariance model (Eq. 6) was fitted by using the optim function available in the stats package. We first determined initial numbers for: (1) the nugget of the marginal temporal variogram, (2) sill of marginal temporal variogram, (3) temporal range parameter, (4) nugget of marginal spatial variogram, (5) sill of marginal spatial variogram, (6) spatial range parameter and (7) total sill, visually by plotting the marginal experimental variograms. Next, the adjusted parameters were determined using the optim function until a satisfactory fit was achieved (see further Fig. 7). The procedure to estimate a sum-metric space-time variogram is explained in more detail in Heuvelink and Griffith (2010).
Precise estimation of the space-time covariance model is important if a search radius is used to speed up kriging, which is common practice and indeed necessary in case of many observations (recall that there are 57,282 observations in this case). Ideally, the algorithm must use only those observations that have the strongest correlation with the variable at the prediction location. This is not only affected by their distance in space and time, but also by the temporal and spatial ranges and sills. By selecting the right space-time covariance model (especially the right geometric anisotropy ratio), we can prevent generating artifacts. For example, in this case point measurements are based on station data—the observations are stacked at top of each other in the space-time cube—which can lead to near-singularity problems if inappropriate variogram parameters are used.
Principal components were extracted using the prcomp method, as implemented in the basic R package stats (Venables and Ripley 2002). This method allows setting of unit variance for diverse predictors (DEM, TWI, DSEA, MODIS LST, Latitude, Longitude). Note that we build a global Principal Component Analysis (PCA) model (Ψ) that is fitted using values of auxiliary predictors at all sampling locations. This global model can then be used to predict PC components for each new time step j, at any given location where auxiliary predictors are available. After fitting a global regression model for all n · m observation pairs (T, t, PC1, PC2, ..., PCp), spatio-temporal auto-correlation in the residuals can be represented by fitting the variograms as described before. Once all the parameters of the model have been estimated—principal component transformation coefficients, regression coefficients, variogram model parameters—the model in Eq. 9 is used to make predictions for any location in the space-time cube (see also Fig. 1).
3D kriging can be implemented in gstat both in the Kriging with External Drift (KED) or in the regression-kriging (RK) version via the krige or krige0 function that allows parsing of any type of covariance model2 (Bivand et al. 2008; Pebesma 2010). In ideal situations both KED and RK algorithms should produce the same results, but there can be differences in processing speed and modeling possibilities. Regression kriging implies that the trend and residual part of the model are fitted and estimated separately. The maps of interpolated residuals produced using ordinary kriging and predictions of the linear model are at the end added together to produce final predictions. In the case of Kriging with External Drift (or universal kriging), both regression and kriging are implemented in a single (matrix) operation (Hengl 2009). We use the regression kriging approach for two main reasons: first, gstat accepts only linear trend models and separation of regression and kriging allows more possibilities to include non-linear regression models; and second, by separating regression from kriging the complexity of the analysis is reduced and the processing can be speeded up by limiting the search radius for kriging predictions, while still being able to model the regression part of the model globally.
Most of the data processing steps including import, reorganization of the data, model fitting and predictions in R are explained in detail in Hengl (2009, ch.11) and Pebesma (2010). GIS operations and statistical operations in R can be combined with the help of R packages RSAGA, sp, rgdal and similar, so that the complete process can be put in a single script (this matches the computational procedure in Fig. 1). The script, including the input data—MODIS images, SRTM DEM, distance to coast line map, original point measurements of temperature and precipitation—used in this case study, can be freely downloaded from the contact author’s website3 and adopted to similar case studies.
A review of spatio-temporal models (dynamic linear state-space models), and some practical suggestions how to analyze such data and fit spatially varying coefficients is given in Banerjee et al. (2004, ch.8), Huang et al. (2007) and Heuvelink and Griffith (2010).
3.5 Accuracy assessment
The comparison between ordinary kriging and spatio-temporal kriging is done only to quantify the added value of using time series of predictors. We do not evaluate the quality of individual stations.
The results of the principal component analysis shows that the predictors are strongly correlated—for example DEM and TWI, and INSOL and MODIS LST. The existence of significant correlation between the auxiliary predictors justifies the use of a principal component analysis. The step-wise regression, as anticipated, typically filters out the last few components which visually show dominantly noisy features and artificial breaks in values. After the PCA, however, it is more difficult to specify which original predictors are more significant, what is their coefficient and sign etc.
From Fig. 7 it is clear that the majority of variation in the residuals is accounted for by the time component. This means that the regression model has better success in explaining the spatial pattern of the temperatures, while the temporal pattern is poorly captured. The nugget variation (day-to-day variability) is still relatively high, which indicates that it is probably impossible to predict daily temperatures with a precision better than ±2°C (global average). The space-time component of the variogram (Eq. 6) is least significant, which indicates that the regression residual is nearly space-time separable. In other words, if we know at a single station that a specific day is colder than the long-term average, then it is likely that this day will be proportionally colder at all stations and vice versa. This is not surprising because the study area, in climatological terms, is relatively small and the overall meteorological conditions are highly correlated.
The results of 10-fold cross-validation confirm that the prediction model is highly accurate. The spatio-temporal regression-kriging explains 91% of the variation in the original values (daily average); compared to 44% for plain ordinary kriging. The cross-validation accuracy increases first if the DEM map is added to the model (78%), and then grows up to 91% if both MODIS LST images and time dimension are used as input to prediction. The RMSE at 50,309 validation points was 2.4°C, which closely corresponds to the estimated nugget variation. The kriging variance maps for both ordinary and space-time regression-kriging in general correspond to the values estimated by the cross-validation. The average value for the ordinary kriging error for the whole study area was, however, somewhat lower than the actual prediction error (3.6°C versus 4.0°C).
5 Discussion and conclusions
The result of this case study indicate that MODIS time series of LST images can be successfully combined with ground measurements of temperatures to produce more accurate and more detailed predictions of daily temperature. The MODIS images used in this case study almost always contained about 10–30% missing pixels (Fig. 3), so that some filtering steps are highly recommended. In addition, visual inspection showed that these images can be fairly noisy with many strange patterns (e.g. artificial line or polygon features, jumps in values) which are obvious artifacts. The precision of MODIS LST estimates is smaller than obtained in the results of Wan et al. (2004) for the simple reason that we used averaged (8-day) estimates rather than daily estimates of LST. If we had used the daily LST images we would have probably been able to predict the values with a higher precision, but then we would be constrained with meteorological conditions because coverage of the daily MODIS LST is typically <50% of the total area (Neteler 2010).
The advantage of using MODIS LST images, on the other hand, is that they account for small differences in temperature that are due to different land cover, moisture content, and non-orographic effects, which cannot be modeled with constant physical parameters such as elevation, latitude, longitude and distance from the coast line. The results of this case study also confirm that the Zagreb urban heat island is 0.5–2°C warmer than the surrounding countryside, which would be impossible to represent by using only topographic parameters. The resulting patterns in Fig. 8 clearly demonstrate that our proposed combination of PCA and filtering with neighbors leads to consistently ‘cleaner’ predictions i.e. maps that typically contain less artifacts and noise than the original MODIS LST images.
An important issue for the success of the space-time regression kriging is the quality of the parameter fitting techniques. We have used a simple regression kriging model so that both regression and residual components were dealt with separately. More realistic model parameters could have been estimated if we had used some multivariate, Maximum Likelihood-based methods that jointly model the deterministic and stochastic parts of variation and possible non-stationarities (estimation in a moving window). The problem is that the mixed spatio-temporal processes (Gelfand et al. 2005) are still rather experimental, and so is the software. For example, fitting space-time variograms is still cumbersome.
A related issue is how to visually explore space-time variograms. In our case (Fig. 6) we have decided to fit parameters for the space and time domain separately (for visualization purposes), and then build the sum-metric model by adding the different components one by one (which can then be visualized by using the marginal variograms shown in Fig. 7). There are many alternatives to represent the spatio-temporal auto-correlation, these need to be tested on a variety of climatic variables. Computational complexity is also an issue: the methods used in this article are time consuming and can take several hours to generate predictions. All this indicates that there is still opportunity to improve the proposed data processing flow (Fig. 1).
Binding spatio-temporal data is also an open issue (Bivand et al. 2008; Pebesma 2010). Although the work on hybrid space-time classes and methods in R has already started (spacetime and spt packages available via R-forge), it will take time until one will be able to use wrapper functions that fit both space-time regression models and allow visual (3D) exploration of space-time correlograms.
It is also worth emphasizing that the proposed model for daily temperatures (Eq. 9) makes use of a statistical model and can lead to poor predictions depending on the density and coverage of ground observations, and the amount of artifacts in the meteorological images. Hence the final quality of predictions is a product of various factors: noise and quantity of missing pixels in the predictors, quality and density of sampling, accuracy of ground measured parameters and strength of relationship between explanatory and dependent variables. There is also the issue of the day-to-day variability in temperatures that is highly random and can be modeled only up to a certain level (Jarvis and Stuart 2001).
Evolution of spatio-temporal analysis of climatic station data is today largely driven by increasingly powerful analysis tools and increasingly rich remote sensing data—new generation meteorological satellites, but also SRTM DEM-derived topo-climatic variables and similar global layers. Many of these layers are now available even at no cost, which is an additional motive to replace purely geographical interpolation techniques such as splines or ordinary kriging by methods such as proposed here (Pebesma 2006). This method has demonstrated an operational potential to produce land surface temperature maps of higher quality than purely station-based and purely remote sensing products. We envisage that a single global space-time model could be built using the method described in Fig. 1 to produce calibrated maps of daily temperatures. Time series of complete and calibrated LST images could then be aggregated per pixels to depict local regional and global trends and produce more accurate estimates of climatic parameters.
We encourage researchers and/or project team leaders to use freely publicly available time series of atmospheric and surface reflectance images (MODIS, Meteosat, GOES, GMS) to generate detailed daily maps of climatic variables, instead of using purely static predictors. We encourage readers of this article to use free and open source academic software such as R and SAGA GIS to generate climatic maps, share code and model outputs.
The authors would like to thank to the Croatian Meteorological and Hydrological Service (http://meteo.hr) for providing station data used for model testing and the R-sig-geo community for developing free and open tools for space-time modeling.
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