Plant Systematics and Evolution

, Volume 289, Issue 1–2, pp 1–11 | Cite as

Distribution and polymorphism of Mariner-like elements in the Bambusoideae subfamily

Original Article
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Abstract

Mariner-like elements (MLEs) are class II transposable elements found in almost all eukaryotic genomes including those of plants, from which hundreds of complete and partial sequences have been elucidated. We have characterized 82 amplification fragments representing MLEs derived from diverse members of the Bambusoideae subfamily. Phylogenetic analysis of MLE transposase sequences shows that MLEs are widespread, diverse and abundant in the Bambusoideae. In addition, a molecular phylogeny of the Bambusoideae subfamily was established by using the internal transcribed spacer sequences of nuclear ribosomal DNA (ITS) information. The phylogenetic tree constructed using MLE fragment sequences was incongruent with a second tree based on ITS information. These results suggest horizontal transfer between distantly related species or the existence of an ancestral MLE polymorphism followed by divergent evolution and stochastic loss.

Keywords

Bambusoideae Mariner-like elements (MLEs) ITS Phylogeny 
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Notes

Acknowledgments

We are grateful to N. Ma of the Research Institute of Subtropical Forestry and X. Lin of the Nurturing Station for the State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, for their advice on sketching the sampling strategies. We are also indebted to K. Yoshinaga of the World Bamboos Research Center, Fukuoka, Japan, C. Zhou of Anji Bamboo Museum Garden, M. Zhao of Tianmu Mountain World Biosphere Reserve, and Y. Zhou of Huaan Bamboo Garden for help in collecting the bamboo materials tested in study. This work was supported by special grants from the National Natural Science Foundation of China (nos 30371181 and 30771753) and the Talents Program of Natural Science Foundation of Zhejiang Province (no. R303420).

Supplementary material

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Copyright information

© Springer-Verlag 2010

Authors and Affiliations

  1. 1.School of Agriculture and Biology, Shanghai Jiao Tong UniversityShanghaiChina
  2. 2.The Nurturing Station for the State Key Laboratory of Subtropical SilvicultureZhejiang A & F UniversityLinAnChina

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