Cryptogenic cholestasis in young and adults: ATP8B1, ABCB11, ABCB4, and TJP2 gene variants analysis by high-throughput sequencing
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Mutations in ATP-transporters ATPB81, ABCB11, and ABCB4 are responsible for progressive familial intrahepatic cholestasis (PFIC) 1, 2 and 3, and recently the gene for tight junction protein-2 (TJP2) has been linked to PFIC4.
As these four genes have been poorly studied in young people and adults, we investigated them in this context here.
In patients with cryptogenic cholestasis, we analyzed the presence of mutations by high-throughput sequencing. Bioinformatics analyses were performed for mechanistic and functional predictions of their consequences on biomolecular interaction interfaces.
Of 108 patients, 48 whose cause of cholestasis was not established were submitted to molecular analysis. Pathogenic/likely pathogenic mutations were found in ten (21%) probands for 13 mutations: two in ATP8B 1, six in ABCB11, two in ABCB4, three in TJP2. We also identified seven variants of uncertain significance: two in ATP8B1, one in ABCB11, two in ABCB4 and two in TJP2. Finally, we identified 11 benign/likely benign variants. Patients with pathogenic/likely pathogenic mutations had higher levels of liver stiffness (measured by FibroScan®) and bile acids, as well as higher rates of cholestatic histological features, compared to the patients without at least likely pathogenic mutations. The multivariate analysis showed that itching was the only independent factor associated with disease-causing mutations (OR 5.801, 95% CI 1.244–27.060, p = 0.025).
Mutations in the genes responsible for PFIC may be involved in both young and adults with cryptogenic cholestasis in a considerable number of cases, including in heterozygous status. Diagnosis should always be suspected, particularly in the presence of itching.
KeywordsProgressive familial intrahepatic cholestasis Cryptogenic disease Pathogenic mutations Genetic variants Bioinformatics analysis
Progressive familial intrahepatic cholestasis
Tight junction protein-2
Familial intrahepatic cholestasis 1
Bile salt export pump
Multidrug resistance P-glycoprotein 3
Benign intrahepatic cholestasis
Intrahepatic cholestasis of pregnancy
Primary sclerosing cholangitis
Minor allele frequency
Sorting Intolerant From Tolerant
Human Gene Mutation Database
American College of Medical Genetics and Genomics
Variants of uncertain significance
GV and PA designed the study and collected data. AM, VM, and MS performed the DNA sequencing and applied prediction tools; AD supervised the histological evaluations, FR and RBR performed protein modeling by Mechismo; SG, AM, VM, GV, RV, and PA analyzed the patients’ data. GV wrote the manuscript; all authors critically revised the manuscript.
Compliance with ethical standards
Conflict of interest
The authors declare that they have no conflict of interest.
No grants and other financial support were received.
- 10.Colombo C, Vajro P, Degiorgio D, et al. SIGENP Study Group for Genetic Cholestasis. Clinical features and genotype-phenotype correlations in children with progressive familial intrahepatic cholestasis type 3 related to ABCB4 mutations. J Pediatr Gastroenterol Nutr. 2011;52:73–83.CrossRefPubMedGoogle Scholar
- 11.Dröge C, Bonus M, Baumann U, et al. Sequencing of FIC1, BSEP and MDR3 in a large cohort of patients with cholestasis revealed a high number of different genetic variants. J Hepatol. 2017;S0168–8278:32147–55.Google Scholar
- 16.Richards S, Aziz N, Bale S, et al. ACMG Laboratory Quality Assurance Committee. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17:405–24.CrossRefPubMedPubMedCentralGoogle Scholar