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Soft Computing

, Volume 12, Issue 8, pp 731–737 | Cite as

Parallel complexity of signed graphs for gene assembly in ciliates

  • Tero Harju
  • Chang Li
  • Ion Petre
Original Paper

Abstract

We consider a graph-based model for the study of parallelism in ciliate gene assembly, where a signed graph is associated to each micronuclear gene and the gene assembly is modeled as a graph rewriting process. A natural measure of complexity for gene assembly counts the minimal number of parallel steps needed to reduce the associated signed graph. We investigate the complexity of several classes of the graphs, so far found graphs of parallel complexity up to six. The general problem of whether there exists a finite upper bound for the graph parallel complexity still remains open.

Keywords

Ciliates Gene assembly Graph model Parallelism Complexity 

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Copyright information

© Springer-Verlag 2007

Authors and Affiliations

  1. 1.Department of MathematicsUniversity of Turku, Turku Center for Computer ScienceTurkuFinland
  2. 2.Department of ITÅbo Akademi University, Turku Center for Computer ScienceTurkuFinland
  3. 3.Academy of FinlandHelsinkiFinland

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