Label-free in situ imaging of lignification in the cell wall of low lignin transgenic Populus trichocarpa
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Chemical imaging by confocal Raman microscopy has been used for the visualization of the cellulose and lignin distribution in wood cell walls. Lignin reduction in wood can be achieved by, for example, transgenic suppression of a monolignol biosynthesis gene encoding 4-coumarate-CoA ligase (4CL). Here, we use confocal Raman microscopy to compare lignification in wild type and lignin-reduced 4CL transgenic Populus trichocarpa stem wood with spatial resolution that is sub-μm. Analyzing the lignin Raman bands in the spectral region between 1,600 and 1,700 cm−1, differences in lignin signal intensity and localization are mapped in situ. Transgenic reduction of lignin is particularly pronounced in the S2 wall layer of fibers, suggesting that such transgenic approach may help overcome cell wall recalcitrance to wood saccharification. Spatial heterogeneity in the lignin composition, in particular with regard to ethylenic residues, is observed in both samples.
KeywordsPopulus trichocarpa (black cottonwood) Cell wall Lignin Microspectroscopy Raman imaging Transgenic
Plant cell walls are the most abundant renewable resource of photosynthetically fixed carbon. This lignocellulosic biomass is poised to become the primary source for the production of liquid biofuels (Herrera 2006; Himmel et al. 2007; Pauly and Keegstra 2008a, b; Ragauskas et al. 2006; Somerville 2007). The recalcitrance of plant cell wall materials to cost-effective and efficient degradation, however, poses a major impediment for their use in the production of transportation fuels and chemicals (Pauly and Keegstra 2008b). Plant cell walls have a heterogeneous and complex hierarchical structure, which is primarily made up of cellulose, hemicelluloses, and lignin. The detailed structure of plant cell walls, especially at the ultrastructural level, however, remains to be fully elucidated. Yet, such a detailed knowledge is required to understand the specific chemical and physical obstacles to breakdown.
Lignin is a complex and irregular poly-phenylpropanoid heteropolymer present in the cell walls of vascular plants, and, after cellulose, is the second most abundant natural polymer (Boerjan et al. 2003; Dixon and Reddy 2003; Fukushima 2001; Ralph et al. 2007). Lignin is essential for structural integrity of the cell wall and stiffness and strength of the stem and root; it waterproofs the wall enabling transport of water and solutes through the vascular system, and it is involved in protecting plants against pathogens. As a direct result of the chemical and structural properties tailored for these functional roles, lignin in particular becomes problematic to the postharvest deconstruction of lignocellulosic biomass. For example, in biomass conversion for biofuels, lignin inhibits saccharification in processes aimed at producing simple sugars for fermentation to ethanol (Ralph et al. 2007). The effective use of plants for industrial purposes is in fact largely dependent on the extent to which the plant cell wall is lignified. Importantly, the removal of lignin is a costly and limiting factor (Chiang 2002). Therefore, lignin has become a key plant breeding and genetic engineering target in order to improve cell wall conversion.
Wood is one of the possible feedstocks for the commercial production of cellulosic ethanol (Herrera 2006; Ragauskas et al. 2006). Genetic engineering of trees has generated substantial interests aiming at the development of genotypes with improved wood traits. In wood of transgenic Populus tremuloides, reduction of lignin has been achieved through the suppression of the monolignol pathway gene encoding 4-coumarate-CoA ligase (4CL) by antisense inhibition (Hu et al. 1999). Low lignin wood offers potentials for improved biomass conversion into fermentable sugars.
Analytical tools that permit the accurate rapid characterization of plant cell walls become increasingly important for evaluating specific traits associated with a large number of breeding populations. Accurate investigation of specific chemical characteristics of lignocellulosic materials can be difficult since extractive procedures for the isolation of native components are inevitably destructive, bringing about significant chemical and structural modifications (Atalla and Agarwal 1985, 1986; Fukushima 2001). Analytical chemical in situ methods are, thus, invaluable tools for the compositional and structural characterization of lignocellulosic materials. Some of these techniques, e.g., high-resolution solution-state nuclear magnetic resonance (Yelle et al. 2008), near-infrared (NIR), mid-infrared, and Raman spectroscopy, can afford non-destructive and comparatively inexpensive measurements with minimal sample preparation. NIR spectroscopy was introduced as a rapid analysis tool for characterizing the bulk chemical properties of transgenic aspen wood (Yamada et al. 2006). Most recently, the rapid analysis of lignin monomer composition in hybrid poplar by a streamlined thioacidolysis procedure and NIR reflectance-based prediction modeling was established enabling medium- to high-throughput screening (Robinson and Mansfield 2009). Raman spectroscopy was shown to be well suited to give insights into both the composition and the structure of lignocellulosic materials (Agarwal 1999, 2008; Agarwal and Ralph 1997; Atalla and Agarwal 1985, 1986); it has multi-phase sensitivity and it is label-free and non-invasive in nature. Raman spectroscopy enabled the study of changes in lignin structure in the xylem of stems of genetically manipulated tobacco plants (Stewart et al. 1997). It also permitted in situ quantification of the aromatic-ring-conjugated ethylenic structures of lignin in spruce wood (Agarwal and Ralph 2008). Raman microscopy was used on wood samples, coupling the spectral analysis with spatial resolution (Atalla and Agarwal 1985, 1986; Roder et al. 2004; Roder and Sixta 2005). Confocal Raman microscopy facilitated the chemical imaging of poplar (Gierlinger and Burgert 2006; Gierlinger and Schwanninger 2006) and spruce wood cell walls (Agarwal 2006). It enabled the in situ study of the spatial distribution and orientation of cell wall polymers, in particular cellulose and lignin. The potential of Raman microscopy and Raman imaging in plant research was discussed in detail in a recent review (Gierlinger and Schwanninger 2007).
Here, we use confocal Raman microscopy to acquire and compare chemical images of wild type and lignin-deficient transgenic Populus trichocarpa (black cottonwood) wood cross-sections. Differences in lignin content, localization, and chemical composition in the cell walls are visualized without staining or labeling of the tissues.
Materials and methods
Samples and sample preparation
A cDNA (Ptr4CL3, GenBank accession number: EU603298) encoding lignin specific 4-coumarate-CoA ligase (Hu et al. 1999) was cloned from stem differentiating xylem of P. trichocarpa (black cottonwood genotype Nisqually-1). The coding sequence of Ptr4CL3 was cloned into a modified binary vector pBI121 in an antisense orientation with respect to a CaMV double 35S promoter to replace the GUS gene. The binary vector was then mobilized into Agrobacterium tumefaciens C-58 for transforming Nisqually-1 following Song et al. (2006). Greenhouse grown transgenic and untransformed P. trichocarpa (Nisqually-1) wild-type plants of 8 months old were quantified for stem wood chemical composition (Hu et al. 1999; Yamada et al. 2006). Stem wood from two transgenic P. trichocarpa lines, as4CL-12 and as4CL-4, and a wild-type control, having lignin contents of 12.1, 15.0 and 20.5%, respectively, was used for this study. The lignin content represents the total quantity of the acid-insoluble and acid-soluble lignin determined by the Klason method (Hu et al. 1999; Yamada et al. 2006). For comparison, a fragment of a branch of a 7-year-old Populus angustifolia tree, grown in the University of California at Berkeley Botanical Garden, was obtained. 100-μm-thick transverse sections from the native woody tissues were prepared by microtome (Leica, VT1000 S vibrating-blade microtome). The sections were air-dried, placed in D2O (Aldrich) on glass microscope slides and covered with glass cover slips (18 × 18 × 0.17 mm). The edges of the cover slips were sealed onto the glass slides to prevent evaporation of D2O.
Two-dimensional spectral maps were acquired with a confocal Raman microscope (WITec, alpha300 S, fiber/pinhole diameter = 100 μm) equipped with a piezoelectric scan stage. In order to gain high spatial resolution, a 100× oil immersion microscope objective (Nikon, NA = 1.40, WD = 0.13 mm) and a laser in the visible wavelength range (λ = 532 nm) were used. The linearly polarized laser light was focused with a nearly diffraction-limited spot size onto the samples and the Raman light was detected by a CCD camera (Andor, DV401-BV) behind a grating (600 grooves mm−1) spectrometer (WITec, UHTS 300) with a spectral resolution of 3 cm−1. The laser power on the samples was approximately 30 mW. The lateral resolution of our system was determined via a knife-edge measurement within our sample fluid cell to be ~300 nm, which is not significantly lower than the theoretical limit (0.61λ/NA ≈ 230 nm). Sample areas of 40 × 40 μm2 were mapped in 200-nm steps recording 40000 spectra with an integration time of 100 ms per spectrum. The WITec Project software (version 1.94) and MATLAB (MathWorks, version 7.7) were used for spectral and image processing and analysis. Chemical images were computed from the two-dimensional spectral maps by integrating the intensity over a defined wavenumber range in the baseline-corrected Raman spectra and by evaluating the area under fitted Gaussian peaks of selected bands. Intensity normalization between the different spectral maps was performed using as a reference the peak height of the O–D stretching band around 2,500 cm−1 (Atalla and Agarwal 1985; 1986) in the average lumen spectra (obtained from k-means clustering classification), for which the observed variation was ≤6%.
Assignment of selected bands in the Raman spectra of poplar
Symmetric aryl ring stretching
Ring-conjugated C=C stretch of coniferaldehyde
Ring-conjugated C=C stretch of coniferyl alcohol; C=O stretch of coniferaldehyde
By contrast, there are marked differences for the as4CL-12 wood (Fig. 2e). While the relative lignin signal intensity is still higher in the CC and CML than in the S2 layer, there is a clear overall reduction of lignin compared to the wild type. In the S2 wall layer of the fibers, lignin is significantly depleted. This is further illustrated by the comparison of the C–H and lignin band intensity profiles of line cuts across cell walls in the wild type and as4CL-12 (Fig. 2c, f). Measurements on a second transgenic line, as4CL-4 (15.0% lignin content), gave comparable results to those of as4CL-12 (Supplementary Figure).
A minor G-layer is discernible towards the lumen in a number of fibers (Fig. 2a, d). The gelatinous layer or G-layer, which is mainly constituted of cellulose microfibrils oriented nearly parallel to the fiber axis, is an extra secondary wall layer in tension wood in a number of hardwood species. G-layers can always be observed in wood of trees under normal growth conditions; however, the extent of G-layer formation is insignificant compared to true tension wood fibers [cf. (Gierlinger and Schwanninger 2006)] and unlikely to result in noticeable changes in secondary wall biosynthesis in the fiber walls (Pilate et al. 2004). The average G-layer spectra of wild type and as4CL-12 are shown in Fig. 4d. As expected, only very weak lignin signals are detected (cf. Fig. 1), with the spectral patterns of the lignin bands (inset in Fig. 4d) resembling those observed in the sample average spectra (inset of Fig. 1). However, secondary wall biosynthesis and lignification in true tension wood are known to be different from normal wood (Pilate et al. 2004). Previously, differences in cellulose and lignin distributions in normal and tension poplar wood samples were visualized by confocal Raman microscopy (Gierlinger and Schwanninger 2006). It seems, therefore, that comparing in situ the chemical composition and lignification of normal and tension (G-layer as well as opposite) wood fibers in both wild type and transgenic samples would be an interesting avenue of future investigation.
Confocal Raman microscopy afforded the label-free in situ visualization of the lignification in wild type and transgenic P. trichocarpa wood. The combination of chemical sensitivity with spatial resolution made it possible to compare the lignin signal intensity as well as localization. The large intensity differences between the samples, i.e., the reduction of lignin in transgenics, and also between morphologically distinct cell wall regions within the samples do not suggest an effect of lignin orientation, if present (Agarwal 2006). Further analysis also revealed spatial heterogeneity in the lignin composition of both samples. Raman spectroscopy has a high sensitivity for detecting ring-conjugated ethylenic units (Agarwal 1999; Agarwal and Ralph 2008), which are present at low concentrations mainly as coniferaldehyde and coniferyl alcohol residues. In an earlier study on spruce wood, it was found that the coniferaldehyde and coniferyl alcohol distribution followed that of lignin and that no particular cell wall layer or region was enriched in these ethylenic residues (Agarwal 2006; 2008). In the present case, however, where by contrast vessels were also measured, relative coniferaldehyde enrichment in these vessel walls is observed (Fig. 3c, d). The variability in the relative coniferaldehyde distribution, based on the 1,628–1,605 cm−1 band ratio, is more pronounced in the low-lignin transgenic wood, where relative enrichment is also found in CC and CML of fibers. It is noted, however, that the absolute coniferaldehyde content in as4CL-12 is less than in wild type. Analyzing the relative intensity of the 1,665 cm−1 band (Fig. 3e, f), which is attributed to both, coniferyl alcohol and coniferaldehyde, the respective intensity distributions are seen to be much more homogeneous. This may be due to a compensatory effect of coniferyl alcohol and coniferaldehyde contents, or the spectral sensitivity to detect small differences may not be adequate for this band. It was shown that secondary walls of vessels generally have higher lignin content than those of fibers, and that lignin in vessels is generally enriched in guaiacyl units, whereas lignin in fibers is typically enriched in syringyl units (Boerjan et al. 2003; Fukushima 2001; Ralph et al. 2007). Vessels, especially, are prone to buckle under mechanical load and to collapse. The relative coniferaldehyde enrichment observed in the vessel walls may contribute to the mechanical strengthening of these composite walls, conceivably via hydrogen bonding to cellulose and hemicelluloses (Agarwal 1999).
The determination of lignin content and composition and other physico-chemical attributes of plant cell walls are of great importance for screening and evaluating the results of plant breeding and genetic engineering. Chemical imaging by confocal Raman microscopy enables the in situ analysis of lignin and the direct visualization of its heterogeneous distribution. Most wood biomass is in the S2 wall layer of fibers, which, therefore, deserves the main focus of attempts to modify wood properties for possible fuel production (Mellerowicz and Sundberg 2008). An overall reduction of lignin was observed, including a significant depletion in the S2 layer of fibers in the as4CL-12 sample compared to the wild type. This reduction may alleviate the recalcitrance towards saccharification of cellulose and hemicelluloses. The Raman spectra contain information not only on lignin but also cellulose and the hemicelluloses in their native environment. A detailed analysis of these components is more complicated due to their chemical and spectroscopic similarities (Agarwal 1999; Agarwal and Ralph 1997; Gierlinger and Schwanninger 2006). A chemometric approach, including spectra from pure reference compounds and partially extracted wood samples, to dissect the spatial distribution of the carbohydrates is currently underway and will be the subject of a future paper.
Measurements in D2O are useful for exploring the porosity and structural accessibilities, important traits that may also affect lignocellulosic conversion efficiency. The technique is amenable to measurements in aqueous environments and conceivably other liquids, such as ionic liquids, which can be suitable solvents of lignocellulosic biomass. Recently, the capabilities of Fourier-transform infrared microscopy for the in situ study on enzymatic treatment of poplar wood cross-sections were demonstrated (Gierlinger et al. 2008). Given the complementary nature and much higher spatial resolution, confocal Raman microscopy holds great potential for dynamic chemical in situ imaging during lignocellulosic conversion. Evaluating the effect of different degrees of lignification in poplar wood on pretreatment and enzymatic hydrolysis efficiency is a future course of study in our lab. Our current measurement time can be improved by using a spectroscopic electron multiplying CCD camera as a detector (Dieing and Hollricher 2008) or by implementing coherent anti-Stokes Raman scattering (Evans and Xie 2008) and stimulated Raman scattering microscopy (Freudiger et al. 2008) for more sensitive and rapid chemical data collection.
Based on earlier results showing the spatial distribution of cellulose and lignin in wood cell walls, we used confocal Raman microscopy to compare lignification in wild type and transgenic P. trichocarpa wood cross-sections. Examining the lignin Raman bands in the spectral region between 1,600 and 1,700 cm−1, an overall reduction in lignin signal intensity in the as4CL-12 transgenic poplar sample relative to the wild type was detected, which is consistent with the results from a wet chemical analysis. Importantly, differences in lignin localization were visualized in situ in a label-free manner. Lignin was found to be significantly reduced in the S2 wall layers of the transgenic poplar fibers. Given that most wood biomass is in the S2 layer of fibers, this finding may have important implications toward addressing biomass recalcitrance to degradation. By analyzing the three lignin bands at 1,605, 1,628, and 1,665 cm−1 in more detail, it was possible to further dissect the spatial lignin distribution both within and between samples. Spatial heterogeneities in the lignin composition, in particular with regard to coniferaldehyde moieties, were mapped. In both the wild type and transgenic samples, relative coniferaldehyde enrichment was detected, especially in the secondary walls of vessels. The variability in the relative coniferaldehyde distribution was more pronounced in the transgenic sample.
We thank Shanfa Lu for preparing the transgene expression construct. This work was supported in part by the Energy Biosciences Institute, and the National Research Initiative of the USDA Cooperative State Research, Education and Extension Service (CSREES) #2004-35504-14625 and # 2006-35504-17233 to VLC. Work at the Molecular Foundry was supported by the Office of Science, Office of Basic Energy Sciences, of the US Department of Energy under Contract No. DE-AC02-05CH1123.
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