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Population data of 23 Y STRs from Manchu population of Liaoning Province, Northeast China

  • Atif Adnan
  • Kadirya Kasim
  • Allah Rakha
  • Anam Noor
  • Ammar Sabir Cheema
  • Sibte Hadi
  • Jiaxin Xing
Population Data
  • 106 Downloads

Abstract

Mongol-like-horsemen-turned-merchants from Manchuria are known as Manchus, originally their homeland was centered around what is nowadays the city of Shenyang in Northeast China. Previously, worldwide analysis of Y-chromosomal haplotype diversity for 23 STR loci and Y-STR databases with PowerPlex® Y23 System (Promega Corporation Madison, USA) kit were created with collaborative efforts, but Manchu population data was missing. In current study, PowerPlex® Y23 System loci were examined in 328 unrelated Manchu male individuals from Xiuyan and Huanren Manchu autonomous counties in Liaoning province, to calculate the forensic parameters of the 23 STR loci. A total of 323 different haplotypes were observed on these 23 Y-STR loci. The gene diversities ranged from 0.3820 (DYS391) to 0.9696 (DYS385a, b). The overall haplotype diversity was 0.9999 ± 0.0002 at PowerPlex® Y23 System. Rst pairwise analyses, multidimensional scaling plot, and linear discriminatory analysis showed the genetic structure of Manchu population was significantly different from some of Chinese populations like Tibetan and Uyghur. Results of our study showed that PowerPlex® Y23 System marker set provided substantially stronger discriminatory power in Manchu population of China.

Keywords

PowerPlex® Y23 System Forensic Manchu, Shenyang, China 

Notes

Funding information

This project is supported by the National Natural Science Foundation of P. R. China (NSFC, No. 81671872), Ministry of Finance, P. R. China.

Compliance with ethical standards

All participants gave their informed consent in writing after the study aims and procedures were carefully explained to them in their own language. The study was approved by the ethical review board of the China Medical University, Shenyang Liaoning Province, People’s Republic of China, and in accordance with the standards of the Declaration of Helsinki.

Conflict of interest

The authors declare that they have no conflict of interest.

Supplementary material

414_2018_1957_MOESM1_ESM.jpg (589 kb)
Figure S1 The Manchu population of Liaoning (shaded red) within the People’s Republic of China (JPG 589 kb)
414_2018_1957_MOESM2_ESM.xlsx (49 kb)
Table S1 (XLSX 49 kb)
414_2018_1957_MOESM3_ESM.xlsx (14 kb)
Table S2 (XLSX 14 kb)
414_2018_1957_MOESM4_ESM.xlsx (13 kb)
Table S3 (XLSX 13 kb)

References

  1. 1.
    Elegant RS (1980) Manchu. McGraw-Hill, New YorkGoogle Scholar
  2. 2.
    Adnan A, Rakha A, Noor A, van Oven M, Ralf A, Kayser M (2017) Population data of 17 Y-STRs (Yfiler) from Punjabis and Kashmiris of Pakistan. Int J Legal Med 132:137–138.  https://doi.org/10.1007/s00414-017-1611-9 CrossRefPubMedGoogle Scholar
  3. 3.
    Adnan A, Ralf A, Rakha A, Kousouri N, Kayser M (2016) Improving empirical evidence on differentiating closely related men with RM Y-STRs: a comprehensive pedigree study from Pakistan. Forensic Sci Int Genet 25:45–51.  https://doi.org/10.1016/j.fsigen.2016.07.005 CrossRefPubMedGoogle Scholar
  4. 4.
    Adnan A, Rakha A, Lao O, Kayser M (2018) Mutation analysis at 17 Y-STR loci (Yfiler) in father-son pairs of male pedigrees from Pakistan. Forensic SciInt Genet 36:e17–e18.  https://doi.org/10.1016/j.fsigen.2018.07.001 CrossRefGoogle Scholar
  5. 5.
    Zhan X, Adnan A, Zhou Y, Khan A, Kasim K, McNevin D (2018) Forensic characterization of 15 autosomal STRs in four populations from Xinjiang, China, and genetic relationships with neighboring populations. Sci Rep 8: .doi:  https://doi.org/10.1038/s41598-018-22975-6
  6. 6.
    Adnan A, Zhan X, Kasim K, Rakha A, Xin XJ (2018) Population data and phylogenetic structure of Han population from Jiangsu province of China on GlobalFiler STR loci. Int J Legal Med 132:1301–1304.  https://doi.org/10.1007/s00414-018-1815-7 CrossRefPubMedGoogle Scholar
  7. 7.
    Rakha A, Oh YN, Lee HY, Hussain S, Waryah AM, Adnan A, Shin KJ (2018) Discriminating power of rapidly mutating Y-STRs in deep rooted endogamous pedigrees from Sindhi population of Pakistan. Legal Med 34:17–20.  https://doi.org/10.1016/j.legalmed.2018.08.001 CrossRefPubMedGoogle Scholar
  8. 8.
    Purps J, Siegert S, Willuweit S, Nagy M, Alves C, Salazar R, Angustia SMT, Santos LH, Anslinger K, Bayer B, Ayub Q, Wei W, Xue Y, Tyler-Smith C, Bafalluy MB, Martínez-Jarreta B, Egyed B, Balitzki B, Tschumi S, Ballard D, Court DS, Barrantes X, Bäßler G, Wiest T, Berger B, Niederstätter H, Parson W, Davis C, Budowle B, Burri H, Borer U, Koller C, Carvalho EF, Domingues PM, Chamoun WT, Coble MD, Hill CR, Corach D, Caputo M, D’Amato ME, Davison S, Decorte R, Larmuseau MHD, Ottoni C, Rickards O, Lu D, Jiang C, Dobosz T, Jonkisz A, Frank WE, Furac I, Gehrig C, Castella V, Grskovic B, Haas C, Wobst J, Hadzic G, Drobnic K, Honda K, Hou Y, Zhou D, Li Y, Hu S, Chen S, Immel UD, Lessig R, Jakovski Z, Ilievska T, Klann AE, García CC, de Knijff P, Kraaijenbrink T, Kondili A, Miniati P, Vouropoulou M, Kovacevic L, Marjanovic D, Lindner I, Mansour I, al-Azem M, Andari AE, Marino M, Furfuro S, Locarno L, Martín P, Luque GM, Alonso A, Miranda LS, Moreira H, Mizuno N, Iwashima Y, Neto RSM, Nogueira TLS, Silva R, Nastainczyk-Wulf M, Edelmann J, Kohl M, Nie S, Wang X, Cheng B, Núñez C, Pancorbo MM, Olofsson JK, Morling N, Onofri V, Tagliabracci A, Pamjav H, Volgyi A, Barany G, Pawlowski R, Maciejewska A, Pelotti S, Pepinski W, Abreu-Glowacka M, Phillips C, Cárdenas J, Rey-Gonzalez D, Salas A, Brisighelli F, Capelli C, Toscanini U, Piccinini A, Piglionica M, Baldassarra SL, Ploski R, Konarzewska M, Jastrzebska E, Robino C, Sajantila A, Palo JU, Guevara E, Salvador J, Ungria MCD, Rodriguez JJR, Schmidt U, Schlauderer N, Saukko P, Schneider PM, Sirker M, Shin KJ, Oh YN, Skitsa I, Ampati A, Smith TG, Calvit LS, Stenzl V, Capal T, Tillmar A, Nilsson H, Turrina S, de Leo D, Verzeletti A, Cortellini V, Wetton JH, Gwynne GM, Jobling MA, Whittle MR, Sumita DR, Wolańska-Nowak P, Yong RYY, Krawczak M, Nothnagel M, Roewer L (2014) A global analysis of Y-chromosomal haplotype diversity for 23 STR loci. Forensic SciInt Genet 12:12–23.  https://doi.org/10.1016/j.fsigen.2014.04.008 CrossRefGoogle Scholar
  9. 9.
    Bai R, Liu Y, Lv X, Shi M, Ma S (2016) Genetic polymorphisms of 17 Y chromosomal STRs in She and Manchu ethnic populations from China. Forensic Sci Int Genet 22:e12–e14.  https://doi.org/10.1016/j.fsigen.2016.01.011 CrossRefPubMedGoogle Scholar
  10. 10.
    He J, Guo F (2013) Population genetics of 17 Y-STR loci in Chinese Manchu population from Liaoning Province, Northeast China. Forensic SciInt Genet 7:e84–e85.  https://doi.org/10.1016/j.fsigen.2012.12.006 CrossRefGoogle Scholar
  11. 11.
    Walsh PS, Metzger DA, Higushi R (2013) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques 10(4):506–513 (1991). BioTechniques 54:134–139.  https://doi.org/10.2144/000114018 CrossRefGoogle Scholar
  12. 12.
    Gusmão L, Butler JM, Carracedo A, Gill P, Kayser M, Mayr WR, Morling N, Prinz M, Roewer L, Tyler-Smith C, Schneider PM (2006) DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis. Int J Legal Med 120:191–200CrossRefGoogle Scholar
  13. 13.
    Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. MolEcolResour 10:564–567.  https://doi.org/10.1111/j.1755-0998.2010.02847.x CrossRefGoogle Scholar
  14. 14.
    R Core Team (2015) R: a language and environment for statistical computing. R Foundation for Statistical Computing, ViennaGoogle Scholar
  15. 15.
    Poetsch M, Bajanowski T, Pfeiffer H (2012) The publication of population genetic data in the international journal of legal medicine: guidelines. Int J Legal Med 126:489–490.  https://doi.org/10.1007/s00414-012-0700-z CrossRefGoogle Scholar

Copyright information

© Springer-Verlag GmbH Germany, part of Springer Nature 2018

Authors and Affiliations

  1. 1.Department of Forensic Genetics and Biology, School of Forensic MedicineChina Medical UniversityShenyangPeople’s Republic of China
  2. 2.Department of Forensic SciencesUniversity of Health SciencesLahorePakistan
  3. 3.School of Forensic and Investigative SciencesUniversity of Central LancashirePrestonUK

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