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17 Y-STR haplotype diversity in São Paulo state (southeast of Brazil)

  • Leandro Fonseca de Souza
  • Carlos Henrique Ares Silveira da Motta
  • Rodrigo Soares Moura-Neto
Population Data

Abstract

A sample of 158 Brazilian males from São Paulo (SP), Brazilian southeast, was typed for 17 Y-STR loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, YGATA_H4.1, and DYS385ab). A total of 158 haplotypes were identified, of which all were unique. The haplotype diversity and discrimination capacity were calculated in 1.0 and the genetic diversity was 67.4%. Pairwise haplotype distances showed that the São Paulo population is not significantly different from Rio de Janeiro and Portugal, but is different from African and Native American.

Keywords

Haplotype Y-STR Forensic IMESC Brazil 

Notes

Acknowledgments

We thank Fundação do Desenvolvimento Administrativo (FUNDAP) for the scholarship (to L. F. S.) and to Jessica Grant for reviewing and support.

Compliance with ethical standards

Conflict of interest

The authors declare that they have no conflict of interest.

Supplementary material

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Supplementary Figure 1

Number and origin of haplotypes evaluated for politic microregion of São Paulo state (GIF 131 kb)

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High resolution image (EPS 331 kb)
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Supplementary Figure 2

FST of 17-STR (a) and minimal haplotype (b) and RST of 17-STR (c) and minimal haplotype (d) (GIF 44 kb)

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High resolution image (EPS 543 kb)
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Supplementary Table S1 (XLS 37 kb)
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Supplementary Table S2 (XLS 31 kb)
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Supplementary Table S3 (XLS 12 kb)
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Supplementary Table S4 (XLS 7 kb)
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Supplementary Table S5 (XLS 9 kb)

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Copyright information

© Springer-Verlag GmbH Germany, part of Springer Nature 2018

Authors and Affiliations

  1. 1.Centro de Energia Nuclear na AgriculturaPiracicabaBrazil
  2. 2.Centro de Ciências Naturais e HumanasUniversidade Federal do ABCSanto AndréBrazil
  3. 3.Instituto de Medicina Social e Criminologia de São PauloSão PauloBrazil
  4. 4.Instituto de BiologiaUniversidade Federal do Rio de JaneiroRio de JaneiroBrazil

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