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International Journal of Legal Medicine

, Volume 129, Issue 2, pp 251–252 | Cite as

Population genetics of 17 Y-chromosomal STRs loci in Garo and Santal tribal populations in Bangladesh

  • Mahamud Hasan
  • Pilu Momtaz
  • Ismail Hosen
  • Sudipta Arka Das
  • Sharif Akhteruzzaman
Population Data

Abstract

Allele frequencies and haplotype diversity of 17 Y-chromosomal short tandem repeat (STR) loci included in Y-filer™ PCR amplification kit were studied in 120 Garo and 139 Santal male individuals residing in two distinct regions of Bangladesh. A total of 99 different haplotypes from Garo and 129 different haplotypes from Santal individuals were observed with a corresponding discrimination capacity (DC) of 0.825 and 0.928, respectively. A comparison of the studied data with the published data from Y-STR haplotype reference database (YHRD) based on AMOVA revealed that the Garo population is closely related to Tripuri population from Tripura, India and Santal population moderately close to Munda population from Jharkhand, India. The mainstream Bengali population resides at a significant genetic distance from these two studied populations.

Keywords

Y-STR Haplotype Gene diversity Forensic Ethnic group 

Notes

Acknowledgments

This study was supported by the Multi-Sectoral Program on Violence Against Women (MSPVAW), Ministry of Women and Children Affairs, Government of the People’s Republic of Bangladesh.

Supplementary material

414_2014_981_Fig1_ESM.jpg (146 kb)
Fig. S1

Map of Bangladesh showing locations of the populations used in this study. (JPEG 145 kb)

414_2014_981_Fig2_ESM.jpg (104 kb)
Fig. S2

Multidimensional scaling (MDS) plot based on pairwise Rst values between Garo, Santal and other published population data from Asia (stress value = 0.0234). (JPEG 103 kb)

414_2014_981_MOESM1_ESM.docx (19 kb)
Table S1 Allele Frequencies and Gene Diversity for 17 Y-STR markers in 120 unrelated Garo males (DOCX 18 kb)
414_2014_981_MOESM2_ESM.docx (19 kb)
Table S2 Allele Frequencies and Gene Diversity for 17 Y-STR markers in 139 unrelated Santal males (DOCX 18 kb)
414_2014_981_MOESM3_ESM.docx (15 kb)
Table S3 Rst genetic distances (below diagonal) and Rst P values (above diagonal) for pairwise comparisons of Garo, Santal and other 10 Asian populations. (DOCX 15 kb)
414_2014_981_MOESM4_ESM.doc (268 kb)
Table S4 Y Chromosome haplotypes detected from 120 unrelated males in Garo population residing in Bangladesh. (DOC 268 kb)
414_2014_981_MOESM5_ESM.doc (333 kb)
Table S5 Y Chromosome haplotypes detected from 139 unrelated males in Santal population residing in Bangladesh. (DOC 333 kb)

References

  1. 1.
    Carlson RV, Boyd KM, Webb DJ (2004) The revision of the Declaration of Helsinki: past, present and future. Br J Clin Pharmacol 57:695–713CrossRefPubMedCentralPubMedGoogle Scholar
  2. 2.
    Walsh PS, Metzger DA, Higuchi R (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10:506–513PubMedGoogle Scholar
  3. 3.
    Gusmão L, Butler JM, Carracedo A, Gill AP, Kayser M, Mayr WR, Morling N, Prinz M, Roewer L, Tyler Smith C, Schneider PM (2006) DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendation on the use of Y-STRs in forensic analysis. Forensic Sci Int 157:187–197CrossRefPubMedGoogle Scholar
  4. 4.
    Williuweit S, Roewer L (2007) Y chromosome haplotype reference database (YHRD): update. Forensic Sci Int Genet 1:83–87CrossRefGoogle Scholar
  5. 5.
    Schneider PM (2007) Scientific standards for studies in forensic genetics. Forensic Sci Int 165:238–243CrossRefPubMedGoogle Scholar
  6. 6.
    Caracedo A, Butler JM, Gusmão L, Parson W, Roewer L, Schneider PM (2010) Publication of population data for forensic purpose. Forensic Sci Int Genet 4:145–147CrossRefGoogle Scholar
  7. 7.
    Alam S, Ali ME, Ferdous A, Hossain T, Hasan MM, Akhteruzzaman S (2010) Haplotype diversity of 17 Y-chromosomal STR loci in the Bangladeshi population. Forensic Sci Int Genet 4:e55–e60CrossRefGoogle Scholar
  8. 8.
    Roy S, Noor S, Haque I (2012) Genetic Analysis of 17 Ychromosomal STRs haplotype of three ethnic groups residing in West Bengal, India. Forensic Sci Int Genet 6:e5–e7CrossRefPubMedGoogle Scholar

Copyright information

© Springer-Verlag Berlin Heidelberg 2014

Authors and Affiliations

  • Mahamud Hasan
    • 1
  • Pilu Momtaz
    • 1
  • Ismail Hosen
    • 2
  • Sudipta Arka Das
    • 2
  • Sharif Akhteruzzaman
    • 2
  1. 1.National Forensic DNA Profiling LaboratoryDhakaBangladesh
  2. 2.Department of Biochemistry and Molecular BiologyUniversity of DhakaDhakaBangladesh

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